HEADER HYDROLASE 05-SEP-07 2R62 TITLE CRYSTAL STRUCTURE OF HELICOBACTER PYLORI ATP DEPENDENT PROTEASE, FTSH COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION PROTEASE FTSH HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ATPASE DOMAIN, UNP RESIDUES 160-419; COMPND 5 EC: 3.4.24.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_COMMON: CAMPYLOBACTER PYLORI; SOURCE 4 ORGANISM_TAXID: 210; SOURCE 5 GENE: FTSH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS FTSH, ATPASE DOMAIN, HELICOBACTER PYLORI, ATP-BINDING, CELL CYCLE, KEYWDS 2 CELL DIVISION, HYDROLASE, MEMBRANE, METAL-BINDING, METALLOPROTEASE, KEYWDS 3 NUCLEOTIDE-BINDING, PROTEASE, TRANSMEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR S.H.KIM,G.B.KANG,H.-E.SONG,S.J.PARK,M.-H.BAE,S.H.EOM REVDAT 5 25-OCT-23 2R62 1 REMARK REVDAT 4 10-NOV-21 2R62 1 SEQADV REVDAT 3 13-JUL-11 2R62 1 VERSN REVDAT 2 24-FEB-09 2R62 1 VERSN REVDAT 1 09-SEP-08 2R62 0 JRNL AUTH S.H.KIM,G.B.KANG,H.-E.SONG,S.J.PARK,M.-H.BEA,S.H.EOM JRNL TITL STRUCTURAL STUDIES ON HELICOBACTER PYLORIATP-DEPENDENT JRNL TITL 2 PROTEASE, FTSH JRNL REF J.SYNCHROTRON RADIAT. V. 15 208 2008 JRNL REFN ISSN 0909-0495 JRNL PMID 18421140 JRNL DOI 10.1107/S090904950706846X REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 8963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.283 REMARK 3 R VALUE (WORKING SET) : 0.280 REMARK 3 FREE R VALUE : 0.336 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 461 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 666 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4030 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.4870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3802 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 142.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.75000 REMARK 3 B22 (A**2) : -3.75000 REMARK 3 B33 (A**2) : 5.63000 REMARK 3 B12 (A**2) : -1.88000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.737 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.651 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 90.490 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.879 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3854 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5194 ; 1.799 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 494 ; 6.572 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;44.298 ;25.227 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 702 ;20.687 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;18.004 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 590 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2896 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2534 ; 0.314 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2702 ; 0.331 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 202 ; 0.228 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 76 ; 0.296 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.360 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2527 ;14.107 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3938 ;18.790 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1442 ; 0.983 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1256 ; 1.695 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 160 A 340 REMARK 3 ORIGIN FOR THE GROUP (A): -29.6450 4.8276 -10.5391 REMARK 3 T TENSOR REMARK 3 T11: -0.2441 T22: -0.3867 REMARK 3 T33: -0.2946 T12: 0.1159 REMARK 3 T13: 0.1129 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 2.8442 L22: 1.3302 REMARK 3 L33: 1.9096 L12: 0.8294 REMARK 3 L13: 1.3785 L23: 0.6561 REMARK 3 S TENSOR REMARK 3 S11: -0.2645 S12: -0.0574 S13: -0.2207 REMARK 3 S21: 0.1777 S22: 0.1545 S23: 0.0037 REMARK 3 S31: 0.3984 S32: 0.4554 S33: 0.1101 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 341 A 418 REMARK 3 ORIGIN FOR THE GROUP (A): -22.7722 37.5542 -13.8249 REMARK 3 T TENSOR REMARK 3 T11: -0.2344 T22: -0.3284 REMARK 3 T33: -0.3827 T12: -0.1653 REMARK 3 T13: -0.0988 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 4.8828 L22: 2.4603 REMARK 3 L33: 3.2154 L12: 0.4292 REMARK 3 L13: 0.0237 L23: 2.4405 REMARK 3 S TENSOR REMARK 3 S11: -0.6287 S12: 0.3506 S13: 0.1798 REMARK 3 S21: -0.6107 S22: 0.4554 S23: -0.1841 REMARK 3 S31: -0.4033 S32: -0.1573 S33: 0.1734 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 160 B 340 REMARK 3 ORIGIN FOR THE GROUP (A): -47.2359 27.9705 14.5578 REMARK 3 T TENSOR REMARK 3 T11: -0.3631 T22: -0.4867 REMARK 3 T33: -0.2214 T12: 0.0029 REMARK 3 T13: -0.0966 T23: -0.0565 REMARK 3 L TENSOR REMARK 3 L11: 3.4433 L22: 1.4819 REMARK 3 L33: 3.9000 L12: -0.7684 REMARK 3 L13: -2.1941 L23: 1.0007 REMARK 3 S TENSOR REMARK 3 S11: 0.2057 S12: -0.4502 S13: -0.0891 REMARK 3 S21: 0.2624 S22: 0.0256 S23: -0.2395 REMARK 3 S31: 0.0670 S32: 0.0189 S33: -0.2313 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 341 B 418 REMARK 3 ORIGIN FOR THE GROUP (A): -70.5599 14.7768 -8.8945 REMARK 3 T TENSOR REMARK 3 T11: -0.4726 T22: -0.3079 REMARK 3 T33: 0.0070 T12: 0.0959 REMARK 3 T13: -0.0979 T23: -0.3007 REMARK 3 L TENSOR REMARK 3 L11: 0.5197 L22: 1.2738 REMARK 3 L33: 4.2476 L12: 0.2577 REMARK 3 L13: -1.1451 L23: -1.9736 REMARK 3 S TENSOR REMARK 3 S11: -0.2077 S12: 0.1045 S13: -0.1401 REMARK 3 S21: -0.1480 S22: 0.3977 S23: -0.1868 REMARK 3 S31: -0.0784 S32: 0.3814 S33: -0.1899 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; RESIDUE (B SER 306 ) AND RESIDUE (B GLU 307 ) ARE NOT REMARK 3 LINKED: DISTANCE OF C-N BOND IS 1.64 REMARK 4 REMARK 4 2R62 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044470. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8963 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 41.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.39100 REMARK 200 R SYM FOR SHELL (I) : 0.39100 REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 1IXZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 8.0, 17%(W/V) PEG REMARK 280 4000, 0.2M LI2SO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.21967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.43933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 18.21967 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.43933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 277 REMARK 465 ARG A 278 REMARK 465 ALA A 279 REMARK 465 ALA A 280 REMARK 465 GLY A 281 REMARK 465 GLY A 282 REMARK 465 VAL A 283 REMARK 465 VAL A 284 REMARK 465 SER A 285 REMARK 465 GLY A 286 REMARK 465 LYS A 419 REMARK 465 LEU A 420 REMARK 465 GLU A 421 REMARK 465 HIS A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 HIS A 426 REMARK 465 HIS A 427 REMARK 465 SER B 277 REMARK 465 ARG B 278 REMARK 465 ALA B 279 REMARK 465 ALA B 280 REMARK 465 GLY B 281 REMARK 465 GLY B 282 REMARK 465 VAL B 283 REMARK 465 VAL B 284 REMARK 465 SER B 285 REMARK 465 GLY B 286 REMARK 465 LYS B 419 REMARK 465 LEU B 420 REMARK 465 GLU B 421 REMARK 465 HIS B 422 REMARK 465 HIS B 423 REMARK 465 HIS B 424 REMARK 465 HIS B 425 REMARK 465 HIS B 426 REMARK 465 HIS B 427 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 418 O REMARK 470 LYS B 418 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ALA B 361 O ALA B 361 4455 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 161 CG ASN A 161 OD1 0.162 REMARK 500 ASN A 161 CG ASN A 161 ND2 0.154 REMARK 500 GLU A 289 CG GLU A 289 CD 0.149 REMARK 500 GLU A 289 CD GLU A 289 OE2 0.155 REMARK 500 ARG A 335 CZ ARG A 335 NH1 0.156 REMARK 500 GLN A 367 CD GLN A 367 OE1 0.265 REMARK 500 GLU B 181 CD GLU B 181 OE1 0.100 REMARK 500 GLU B 181 CD GLU B 181 OE2 0.067 REMARK 500 ARG B 250 CZ ARG B 250 NH1 0.080 REMARK 500 ASN B 287 CG ASN B 287 OD1 0.160 REMARK 500 GLY B 305 C GLY B 305 O 0.109 REMARK 500 SER B 306 C GLU B 307 N 0.302 REMARK 500 GLU B 307 CD GLU B 307 OE1 0.072 REMARK 500 GLU B 368 CD GLU B 368 OE1 0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 252 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 335 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 PRO B 165 C - N - CA ANGL. DEV. = 11.2 DEGREES REMARK 500 SER B 306 O - C - N ANGL. DEV. = -10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 161 111.42 77.07 REMARK 500 ASN A 166 69.16 -109.72 REMARK 500 PHE A 169 -76.33 -34.03 REMARK 500 ASP A 171 -3.55 174.04 REMARK 500 MET A 172 -102.66 -86.88 REMARK 500 ALA A 173 48.20 -163.08 REMARK 500 GLU A 177 -26.09 169.52 REMARK 500 GLU A 181 -73.01 -62.02 REMARK 500 VAL A 182 -39.92 -34.78 REMARK 500 ALA A 196 14.84 -66.19 REMARK 500 ALA A 200 151.59 141.61 REMARK 500 ILE A 202 58.22 -149.87 REMARK 500 PRO A 203 74.01 -68.74 REMARK 500 LEU A 207 63.76 -117.43 REMARK 500 LEU A 208 116.40 -35.82 REMARK 500 PRO A 211 -128.28 -62.43 REMARK 500 THR A 217 -9.82 -58.66 REMARK 500 LEU A 218 -74.92 -96.92 REMARK 500 ALA A 224 -70.64 -64.59 REMARK 500 SER A 233 99.51 170.29 REMARK 500 SER A 237 -86.43 -155.97 REMARK 500 SER A 238 12.43 -64.14 REMARK 500 PHE A 243 -114.82 -56.62 REMARK 500 LEU A 246 71.66 59.49 REMARK 500 ALA A 248 60.25 -100.91 REMARK 500 LYS A 260 -88.25 -70.45 REMARK 500 GLN A 261 90.84 -65.60 REMARK 500 GLU A 270 68.11 18.33 REMARK 500 ILE A 271 -57.00 -26.03 REMARK 500 ASP A 272 -68.41 -15.79 REMARK 500 ASP A 288 -175.16 53.93 REMARK 500 GLU A 289 28.92 -176.37 REMARK 500 GLN A 292 -45.75 -161.18 REMARK 500 ASN A 295 45.51 -73.30 REMARK 500 GLN A 296 -78.58 -125.50 REMARK 500 LEU A 297 -6.27 -51.53 REMARK 500 MET A 301 2.10 -62.37 REMARK 500 ASP A 302 -78.32 -129.30 REMARK 500 PHE A 304 -143.96 -159.89 REMARK 500 SER A 306 -154.44 -163.03 REMARK 500 GLU A 307 17.51 -173.09 REMARK 500 ASN A 318 -46.46 -144.14 REMARK 500 ARG A 319 77.57 -104.68 REMARK 500 ILE A 322 33.31 -64.43 REMARK 500 PRO A 330 132.91 -34.09 REMARK 500 ARG A 332 -139.17 -140.76 REMARK 500 PHE A 333 73.49 -67.67 REMARK 500 PHE A 344 30.79 -64.41 REMARK 500 ASN A 345 -15.90 -141.61 REMARK 500 VAL A 353 -42.96 -155.20 REMARK 500 REMARK 500 THIS ENTRY HAS 117 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PHE B 239 13.77 REMARK 500 SER B 306 -11.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2R65 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH ADP DBREF 2R62 A 160 419 UNP P71408 FTSH_HELPY 160 419 DBREF 2R62 B 160 419 UNP P71408 FTSH_HELPY 160 419 SEQADV 2R62 LYS A 170 UNP P71408 ASN 170 ENGINEERED MUTATION SEQADV 2R62 LEU A 420 UNP P71408 EXPRESSION TAG SEQADV 2R62 GLU A 421 UNP P71408 EXPRESSION TAG SEQADV 2R62 HIS A 422 UNP P71408 EXPRESSION TAG SEQADV 2R62 HIS A 423 UNP P71408 EXPRESSION TAG SEQADV 2R62 HIS A 424 UNP P71408 EXPRESSION TAG SEQADV 2R62 HIS A 425 UNP P71408 EXPRESSION TAG SEQADV 2R62 HIS A 426 UNP P71408 EXPRESSION TAG SEQADV 2R62 HIS A 427 UNP P71408 EXPRESSION TAG SEQADV 2R62 LYS B 170 UNP P71408 ASN 170 ENGINEERED MUTATION SEQADV 2R62 LEU B 420 UNP P71408 EXPRESSION TAG SEQADV 2R62 GLU B 421 UNP P71408 EXPRESSION TAG SEQADV 2R62 HIS B 422 UNP P71408 EXPRESSION TAG SEQADV 2R62 HIS B 423 UNP P71408 EXPRESSION TAG SEQADV 2R62 HIS B 424 UNP P71408 EXPRESSION TAG SEQADV 2R62 HIS B 425 UNP P71408 EXPRESSION TAG SEQADV 2R62 HIS B 426 UNP P71408 EXPRESSION TAG SEQADV 2R62 HIS B 427 UNP P71408 EXPRESSION TAG SEQRES 1 A 268 ILE ASN ALA GLU LYS PRO ASN VAL ARG PHE LYS ASP MET SEQRES 2 A 268 ALA GLY ASN GLU GLU ALA LYS GLU GLU VAL VAL GLU ILE SEQRES 3 A 268 VAL ASP PHE LEU LYS TYR PRO GLU ARG TYR ALA ASN LEU SEQRES 4 A 268 GLY ALA LYS ILE PRO LYS GLY VAL LEU LEU VAL GLY PRO SEQRES 5 A 268 PRO GLY THR GLY LYS THR LEU LEU ALA LYS ALA VAL ALA SEQRES 6 A 268 GLY GLU ALA HIS VAL PRO PHE PHE SER MET GLY GLY SER SEQRES 7 A 268 SER PHE ILE GLU MET PHE VAL GLY LEU GLY ALA SER ARG SEQRES 8 A 268 VAL ARG ASP LEU PHE GLU THR ALA LYS LYS GLN ALA PRO SEQRES 9 A 268 SER ILE ILE PHE ILE ASP GLU ILE ASP ALA ILE GLY LYS SEQRES 10 A 268 SER ARG ALA ALA GLY GLY VAL VAL SER GLY ASN ASP GLU SEQRES 11 A 268 ARG GLU GLN THR LEU ASN GLN LEU LEU ALA GLU MET ASP SEQRES 12 A 268 GLY PHE GLY SER GLU ASN ALA PRO VAL ILE VAL LEU ALA SEQRES 13 A 268 ALA THR ASN ARG PRO GLU ILE LEU ASP PRO ALA LEU MET SEQRES 14 A 268 ARG PRO GLY ARG PHE ASP ARG GLN VAL LEU VAL ASP LYS SEQRES 15 A 268 PRO ASP PHE ASN GLY ARG VAL GLU ILE LEU LYS VAL HIS SEQRES 16 A 268 ILE LYS GLY VAL LYS LEU ALA ASN ASP VAL ASN LEU GLN SEQRES 17 A 268 GLU VAL ALA LYS LEU THR ALA GLY LEU ALA GLY ALA ASP SEQRES 18 A 268 LEU ALA ASN ILE ILE ASN GLU ALA ALA LEU LEU ALA GLY SEQRES 19 A 268 ARG ASN ASN GLN LYS GLU VAL ARG GLN GLN HIS LEU LYS SEQRES 20 A 268 GLU ALA VAL GLU ARG GLY ILE ALA GLY LEU GLU LYS LYS SEQRES 21 A 268 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 268 ILE ASN ALA GLU LYS PRO ASN VAL ARG PHE LYS ASP MET SEQRES 2 B 268 ALA GLY ASN GLU GLU ALA LYS GLU GLU VAL VAL GLU ILE SEQRES 3 B 268 VAL ASP PHE LEU LYS TYR PRO GLU ARG TYR ALA ASN LEU SEQRES 4 B 268 GLY ALA LYS ILE PRO LYS GLY VAL LEU LEU VAL GLY PRO SEQRES 5 B 268 PRO GLY THR GLY LYS THR LEU LEU ALA LYS ALA VAL ALA SEQRES 6 B 268 GLY GLU ALA HIS VAL PRO PHE PHE SER MET GLY GLY SER SEQRES 7 B 268 SER PHE ILE GLU MET PHE VAL GLY LEU GLY ALA SER ARG SEQRES 8 B 268 VAL ARG ASP LEU PHE GLU THR ALA LYS LYS GLN ALA PRO SEQRES 9 B 268 SER ILE ILE PHE ILE ASP GLU ILE ASP ALA ILE GLY LYS SEQRES 10 B 268 SER ARG ALA ALA GLY GLY VAL VAL SER GLY ASN ASP GLU SEQRES 11 B 268 ARG GLU GLN THR LEU ASN GLN LEU LEU ALA GLU MET ASP SEQRES 12 B 268 GLY PHE GLY SER GLU ASN ALA PRO VAL ILE VAL LEU ALA SEQRES 13 B 268 ALA THR ASN ARG PRO GLU ILE LEU ASP PRO ALA LEU MET SEQRES 14 B 268 ARG PRO GLY ARG PHE ASP ARG GLN VAL LEU VAL ASP LYS SEQRES 15 B 268 PRO ASP PHE ASN GLY ARG VAL GLU ILE LEU LYS VAL HIS SEQRES 16 B 268 ILE LYS GLY VAL LYS LEU ALA ASN ASP VAL ASN LEU GLN SEQRES 17 B 268 GLU VAL ALA LYS LEU THR ALA GLY LEU ALA GLY ALA ASP SEQRES 18 B 268 LEU ALA ASN ILE ILE ASN GLU ALA ALA LEU LEU ALA GLY SEQRES 19 B 268 ARG ASN ASN GLN LYS GLU VAL ARG GLN GLN HIS LEU LYS SEQRES 20 B 268 GLU ALA VAL GLU ARG GLY ILE ALA GLY LEU GLU LYS LYS SEQRES 21 B 268 LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ALA A 178 TYR A 191 1 14 HELIX 2 2 TYR A 191 GLY A 199 1 9 HELIX 3 3 GLY A 215 GLY A 225 1 11 HELIX 4 4 LEU A 254 GLN A 261 1 8 HELIX 5 5 GLU A 270 ILE A 274 5 5 HELIX 6 6 ASP A 324 ARG A 329 5 6 HELIX 7 7 GLY A 346 ILE A 355 1 10 HELIX 8 8 ALA A 377 LEU A 391 1 15 HELIX 9 9 ARG A 401 GLU A 407 1 7 HELIX 10 10 GLU B 176 VAL B 183 1 8 HELIX 11 11 VAL B 183 TYR B 191 1 9 HELIX 12 12 TYR B 195 GLY B 199 5 5 HELIX 13 13 GLY B 215 HIS B 228 1 14 HELIX 14 14 LEU B 246 ALA B 262 1 17 HELIX 15 15 GLU B 270 GLY B 275 5 6 HELIX 16 16 GLN B 296 MET B 301 1 6 HELIX 17 17 ARG B 319 LEU B 323 5 5 HELIX 18 18 GLY B 346 ILE B 350 5 5 HELIX 19 19 LYS B 352 LYS B 356 5 5 HELIX 20 20 GLU B 368 THR B 373 1 6 HELIX 21 21 ALA B 379 ALA B 392 1 14 HELIX 22 22 LEU B 405 GLU B 407 5 3 HELIX 23 23 ALA B 408 ALA B 414 1 7 SHEET 1 A 2 ILE A 265 ILE A 268 0 SHEET 2 A 2 ILE A 312 ALA A 315 1 O LEU A 314 N ILE A 266 SHEET 1 B 3 GLY B 205 VAL B 209 0 SHEET 2 B 3 VAL B 313 THR B 317 1 O ALA B 315 N LEU B 208 SHEET 3 B 3 ILE B 266 ILE B 268 1 N ILE B 268 O LEU B 314 CISPEP 1 ALA A 262 PRO A 263 0 -1.04 CISPEP 2 ALA B 262 PRO B 263 0 -1.65 CRYST1 141.217 141.217 54.659 90.00 90.00 120.00 P 64 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007081 0.004088 0.000000 0.00000 SCALE2 0.000000 0.008177 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018295 0.00000