HEADER VIRAL PROTEIN/IMMUNE SYSTEM 05-SEP-07 2R69 TITLE CRYSTAL STRUCTURE OF FAB 1A1D-2 COMPLEXED WITH E-DIII OF DENGUE VIRUS TITLE 2 AT 3.8 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR ENVELOPE PROTEIN E; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEAVY CHAIN OF 1A1D-2; COMPND 7 CHAIN: H; COMPND 8 FRAGMENT: FAB; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: LIGHT CHAIN OF 1A1D-2; COMPND 12 CHAIN: L; COMPND 13 FRAGMENT: FAB; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 2 THAILAND/16681/84; SOURCE 3 ORGANISM_TAXID: 31634; SOURCE 4 STRAIN: 16681; SOURCE 5 GENE: E PROTEIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 STRAIN: BALBC; SOURCE 16 GENE: IMMUNOGLOBULIN; SOURCE 17 EXPRESSION_SYSTEM_CELL_LINE: HYBRIDOMA; SOURCE 18 MOL_ID: 3; SOURCE 19 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 20 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 21 ORGANISM_TAXID: 10090; SOURCE 22 STRAIN: BALBC; SOURCE 23 GENE: IMMUNOGLOBULIN; SOURCE 24 EXPRESSION_SYSTEM_CELL_LINE: HYBRIDOMA KEYWDS FAB-ANTIGEN COMPLEX, CAPSID PROTEIN, CLEAVAGE ON PAIR OF BASIC KEYWDS 2 RESIDUES, CORE PROTEIN, ENVELOPE PROTEIN, GLYCOPROTEIN, MEMBRANE, KEYWDS 3 TRANSMEMBRANE, VIRION, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.M.LOK,V.K.KOSTYUCHENKO,G.E.NYBAKKEN,H.A.HOLDAWAY,A.J.BATTISTI, AUTHOR 2 S.SUKUPOLVI-PETTY,D.SEDLAK,D.H.FREMONT,P.R.CHIPMAN,J.T.ROEHRIG, AUTHOR 3 M.S.DIAMOND,R.J.KUHN,M.G.ROSSMANN REVDAT 7 13-NOV-24 2R69 1 DBREF REVDAT 6 24-JAN-18 2R69 1 AUTHOR REVDAT 5 25-OCT-17 2R69 1 REMARK REVDAT 4 09-JUN-09 2R69 1 REVDAT REVDAT 3 24-FEB-09 2R69 1 VERSN REVDAT 2 02-DEC-08 2R69 1 JRNL REVDAT 1 25-DEC-07 2R69 0 JRNL AUTH S.M.LOK,V.KOSTYUCHENKO,G.E.NYBAKKEN,H.A.HOLDAWAY, JRNL AUTH 2 A.J.BATTISTI,S.SUKUPOLVI-PETTY,D.SEDLAK,D.H.FREMONT, JRNL AUTH 3 P.R.CHIPMAN,J.T.ROEHRIG,M.S.DIAMOND,R.J.KUHN,M.G.ROSSMANN JRNL TITL BINDING OF A NEUTRALIZING ANTIBODY TO DENGUE VIRUS ALTERS JRNL TITL 2 THE ARRANGEMENT OF SURFACE GLYCOPROTEINS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 15 312 2008 JRNL REFN ISSN 1545-9993 JRNL PMID 18264114 JRNL DOI 10.1038/NSMB.1382 REMARK 2 REMARK 2 RESOLUTION. 3.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 73.2 REMARK 3 NUMBER OF REFLECTIONS : 5817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.313 REMARK 3 FREE R VALUE : 0.363 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.000 REMARK 3 FREE R VALUE TEST SET COUNT : 634 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3886 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 21.73600 REMARK 3 B22 (A**2) : -31.24700 REMARK 3 B33 (A**2) : 9.51200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.54500 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 10.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2R69 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044476. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6433 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 68.3 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 37.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.21900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 3350, PH 5.8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 82.38500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.44400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 82.38500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.44400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN H 108 REMARK 465 GLY H 109 REMARK 465 THR H 110 REMARK 465 THR H 135 REMARK 465 SER H 136 REMARK 465 SER H 137 REMARK 465 SER H 138 REMARK 465 SER H 193 REMARK 465 GLN H 194 REMARK 465 PRO H 215 REMARK 465 ARG H 216 REMARK 465 SER L 203 REMARK 465 PRO L 204 REMARK 465 ILE L 205 REMARK 465 VAL L 206 REMARK 465 ASN L 210 REMARK 465 ARG L 211 REMARK 465 ASN L 212 REMARK 465 GLU L 213 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 341 O GLU A 343 2.05 REMARK 500 OG SER H 7 OG SER H 21 2.06 REMARK 500 O ILE A 335 N PHE A 337 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 300 N - CA - C ANGL. DEV. = 17.2 DEGREES REMARK 500 MET A 301 N - CA - C ANGL. DEV. = -19.3 DEGREES REMARK 500 GLU A 343 N - CA - C ANGL. DEV. = -19.7 DEGREES REMARK 500 ARG A 345 N - CA - C ANGL. DEV. = -18.8 DEGREES REMARK 500 PHE A 373 N - CA - C ANGL. DEV. = 20.9 DEGREES REMARK 500 VAL A 382 N - CA - C ANGL. DEV. = -19.5 DEGREES REMARK 500 ASN H 77 N - CA - C ANGL. DEV. = 22.4 DEGREES REMARK 500 PRO H 129 CA - CB - CG ANGL. DEV. = -12.4 DEGREES REMARK 500 PRO H 152 C - N - CA ANGL. DEV. = -10.0 DEGREES REMARK 500 GLY H 160 N - CA - C ANGL. DEV. = -15.7 DEGREES REMARK 500 GLN H 174 N - CA - C ANGL. DEV. = -20.8 DEGREES REMARK 500 SER H 175 N - CA - C ANGL. DEV. = 21.4 DEGREES REMARK 500 SER H 189 N - CA - C ANGL. DEV. = 19.4 DEGREES REMARK 500 PRO H 192 C - N - CD ANGL. DEV. = -13.8 DEGREES REMARK 500 PRO H 203 C - N - CA ANGL. DEV. = 10.3 DEGREES REMARK 500 PHE L 66 N - CA - C ANGL. DEV. = 17.2 DEGREES REMARK 500 SER L 67 N - CA - C ANGL. DEV. = 23.9 DEGREES REMARK 500 SER L 71 N - CA - C ANGL. DEV. = 19.6 DEGREES REMARK 500 ASP L 86 N - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 PRO L 117 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 PHE L 122 CB - CG - CD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 PRO L 123 C - N - CA ANGL. DEV. = 12.5 DEGREES REMARK 500 ASP L 147 N - CA - C ANGL. DEV. = 25.4 DEGREES REMARK 500 ILE L 148 N - CA - C ANGL. DEV. = 31.3 DEGREES REMARK 500 ILE L 154 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 GLY L 156 N - CA - C ANGL. DEV. = -18.1 DEGREES REMARK 500 SER L 175 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 CYS L 198 CA - CB - SG ANGL. DEV. = 8.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 317 -9.28 -58.26 REMARK 500 GLU A 327 70.49 -107.97 REMARK 500 SER A 331 -57.20 -138.53 REMARK 500 CYS A 333 -169.11 -124.44 REMARK 500 PRO A 336 55.20 -65.08 REMARK 500 LEU A 342 -16.63 -45.64 REMARK 500 GLU A 343 -165.39 -127.14 REMARK 500 HIS A 346 165.77 -46.09 REMARK 500 VAL A 347 139.33 -39.78 REMARK 500 LEU A 348 75.51 -153.71 REMARK 500 VAL A 354 -90.79 -33.82 REMARK 500 ILE A 357 -152.06 -142.52 REMARK 500 THR A 359 -52.37 -122.04 REMARK 500 PRO A 384 112.52 -39.43 REMARK 500 ALA H 16 -159.75 -157.63 REMARK 500 ILE H 29 -41.38 -27.13 REMARK 500 ASP H 31 -39.88 -33.40 REMARK 500 THR H 32 -143.58 -146.39 REMARK 500 PRO H 41 -70.97 -16.72 REMARK 500 SER H 58 136.13 -177.50 REMARK 500 GLN H 65 -81.41 -50.62 REMARK 500 LYS H 67 -98.41 -66.10 REMARK 500 ALA H 68 -179.31 -69.92 REMARK 500 THR H 69 94.73 -168.02 REMARK 500 THR H 71 127.42 -174.37 REMARK 500 SER H 75 -152.59 -95.65 REMARK 500 THR H 87 -156.85 -115.06 REMARK 500 THR H 91 96.43 -66.11 REMARK 500 ARG H 98 -38.38 -143.54 REMARK 500 GLU H 101 51.22 84.80 REMARK 500 TRP H 106 -168.65 -118.50 REMARK 500 PRO H 121 153.18 -37.73 REMARK 500 PRO H 129 -138.42 -151.95 REMARK 500 THR H 140 99.94 -166.64 REMARK 500 PHE H 149 -79.19 -118.65 REMARK 500 PRO H 150 134.99 -36.54 REMARK 500 GLU H 151 8.02 -65.63 REMARK 500 VAL H 153 86.33 -155.52 REMARK 500 SER H 159 -50.52 -151.84 REMARK 500 PRO H 170 164.66 -46.35 REMARK 500 ASP H 176 33.76 70.33 REMARK 500 VAL H 186 66.27 -113.46 REMARK 500 THR H 187 -2.47 -52.09 REMARK 500 SER H 189 -57.12 -14.55 REMARK 500 ILE H 196 -156.67 -116.65 REMARK 500 THR H 197 162.57 173.49 REMARK 500 SER H 206 76.97 60.10 REMARK 500 GLN L 6 94.88 -64.58 REMARK 500 SER L 7 -74.77 -46.67 REMARK 500 PRO L 8 86.25 -53.00 REMARK 500 REMARK 500 THIS ENTRY HAS 95 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE L 122 0.21 SIDE CHAIN REMARK 500 TYR L 177 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2R69 A 298 394 UNP P18356 POLG_DEN2U 478 574 DBREF 2R69 H 1 216 PDB 2R69 2R69 1 216 DBREF 2R69 L 1 213 PDB 2R69 2R69 1 213 SEQRES 1 A 97 SER TYR SER MET CYS THR GLY LYS PHE LYS VAL VAL LYS SEQRES 2 A 97 GLU ILE ALA GLU THR GLN HIS GLY THR ILE VAL ILE ARG SEQRES 3 A 97 VAL GLN TYR GLU GLY ASP GLY SER PRO CYS LYS ILE PRO SEQRES 4 A 97 PHE GLU ILE MET ASP LEU GLU LYS ARG HIS VAL LEU GLY SEQRES 5 A 97 ARG LEU ILE THR VAL ASN PRO ILE VAL THR GLU LYS ASP SEQRES 6 A 97 SER PRO VAL ASN ILE GLU ALA GLU PRO PRO PHE GLY ASP SEQRES 7 A 97 SER TYR ILE ILE ILE GLY VAL GLU PRO GLY GLN LEU LYS SEQRES 8 A 97 LEU ASN TRP PHE LYS LYS SEQRES 1 H 214 GLU VAL GLN LEU GLN GLN SER GLY ALA GLU LEU VAL LYS SEQRES 2 H 214 PRO GLY ALA SER VAL LYS LEU SER CYS THR ALA SER GLY SEQRES 3 H 214 PHE ASN ILE LYS ASP THR TYR MET HIS TRP VAL LYS GLN SEQRES 4 H 214 ARG PRO GLU GLN GLY LEU GLU TRP ILE GLY ARG ILE ASP SEQRES 5 H 214 PRO ALA ASN GLY TYR SER LYS TYR ASP PRO LYS PHE GLN SEQRES 6 H 214 GLY LYS ALA THR ILE THR ALA ASP THR SER SER ASN ALA SEQRES 7 H 214 ALA TYR LEU GLN LEU SER SER LEU THR SER GLU ASP THR SEQRES 8 H 214 ALA VAL TYR PHE CYS ALA ARG ASP TYR GLU GLY PHE ALA SEQRES 9 H 214 TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SEQRES 10 H 214 LYS THR THR PRO PRO SER VAL TYR PRO LEU ALA PRO GLY SEQRES 11 H 214 ALA ALA THR SER SER SER VAL THR LEU GLY CYS LEU VAL SEQRES 12 H 214 LYS GLY TYR PHE PRO GLU PRO VAL THR LEU THR TRP ASN SEQRES 13 H 214 SER GLY SER LEU SER SER GLY VAL HIS THR PHE PRO ALA SEQRES 14 H 214 VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SER VAL SEQRES 15 H 214 THR VAL THR SER SER THR TRP PRO SER GLN THR ILE THR SEQRES 16 H 214 CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS VAL ASP SEQRES 17 H 214 LYS LYS ILE GLU PRO ARG SEQRES 1 L 212 ASP ILE VAL LEU THR GLN SER PRO ALA SER LEU ALA VAL SEQRES 2 L 212 SER LEU GLY GLN ARG ALA THR ILE SER CYS ARG ALA SER SEQRES 3 L 212 GLU SER VAL VAL ARG TYR GLY ASN SER PHE MET HIS TRP SEQRES 4 L 212 TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU LEU ILE SEQRES 5 L 212 TYR ARG ALA SER SER LEU GLU SER GLY ILE PRO THR ARG SEQRES 6 L 212 PHE SER GLY SER GLY SER ARG THR ASP PHE THR LEU THR SEQRES 7 L 212 ILE ASN PRO VAL GLU ALA ASP ASP VAL ALA THR TYR TYR SEQRES 8 L 212 CYS GLN GLN THR ASN VAL ASP PRO TRP ALA PHE GLY GLY SEQRES 9 L 212 GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO SEQRES 10 L 212 THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU THR SEQRES 11 L 212 SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN PHE SEQRES 12 L 212 TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SEQRES 13 L 212 SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR ASP SEQRES 14 L 212 GLN ASP SER LYS ASP SER THR TYR SER MET SER SER THR SEQRES 15 L 212 LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SER SEQRES 16 L 212 TYR THR CYS GLU ALA THR SER PRO ILE VAL LYS SER PHE SEQRES 17 L 212 ASN ARG ASN GLU HELIX 1 1 ASN H 28 THR H 32 5 5 HELIX 2 2 ASP H 61 GLN H 65 5 5 SHEET 1 A 3 LYS A 305 VAL A 308 0 SHEET 2 A 3 ARG A 323 GLU A 327 -1 O GLU A 327 N LYS A 305 SHEET 3 A 3 VAL A 365 ASN A 366 -1 O VAL A 365 N VAL A 324 SHEET 1 B 3 GLU A 338 MET A 340 0 SHEET 2 B 3 ASP A 375 ILE A 379 -1 O TYR A 377 N MET A 340 SHEET 3 B 3 LEU A 389 PHE A 392 -1 O LEU A 389 N ILE A 378 SHEET 1 C 2 ARG A 350 LEU A 351 0 SHEET 2 C 2 ALA A 369 GLU A 370 -1 O GLU A 370 N ARG A 350 SHEET 1 D 3 GLN H 5 GLN H 6 0 SHEET 2 D 3 SER H 21 THR H 23 -1 O THR H 23 N GLN H 5 SHEET 3 D 3 ALA H 79 TYR H 80 -1 O ALA H 79 N CYS H 22 SHEET 1 E 2 GLU H 10 VAL H 12 0 SHEET 2 E 2 VAL H 112 VAL H 114 1 O THR H 113 N VAL H 12 SHEET 1 F 3 GLU H 46 ILE H 51 0 SHEET 2 F 3 MET H 34 GLN H 39 -1 N TRP H 36 O ILE H 48 SHEET 3 F 3 VAL H 93 PHE H 95 -1 O PHE H 95 N VAL H 37 SHEET 1 G 4 SER H 123 LEU H 127 0 SHEET 2 G 4 GLY H 142 LYS H 146 -1 O LYS H 146 N SER H 123 SHEET 3 G 4 LEU H 177 VAL H 184 -1 O LEU H 180 N VAL H 145 SHEET 4 G 4 VAL H 166 THR H 168 -1 N HIS H 167 O SER H 183 SHEET 1 H 4 SER H 123 LEU H 127 0 SHEET 2 H 4 GLY H 142 LYS H 146 -1 O LYS H 146 N SER H 123 SHEET 3 H 4 LEU H 177 VAL H 184 -1 O LEU H 180 N VAL H 145 SHEET 4 H 4 VAL H 172 GLN H 174 -1 N VAL H 172 O THR H 179 SHEET 1 I 3 THR H 154 THR H 156 0 SHEET 2 I 3 ASN H 199 HIS H 202 -1 O ASN H 199 N THR H 156 SHEET 3 I 3 THR H 207 VAL H 209 -1 O THR H 207 N HIS H 202 SHEET 1 J 2 ALA L 19 ILE L 21 0 SHEET 2 J 2 LEU L 77 ILE L 79 -1 O LEU L 77 N ILE L 21 SHEET 1 K 3 LYS L 49 TYR L 53 0 SHEET 2 K 3 MET L 37 GLN L 41 -1 N TRP L 39 O LEU L 51 SHEET 3 K 3 CYS L 92 GLN L 94 -1 O GLN L 93 N HIS L 38 SHEET 1 L 3 CYS L 138 PHE L 143 0 SHEET 2 L 3 THR L 176 SER L 181 -1 O SER L 181 N CYS L 138 SHEET 3 L 3 TRP L 167 ASP L 171 -1 N ASP L 171 O THR L 176 SHEET 1 M 2 LYS L 151 TRP L 152 0 SHEET 2 M 2 CYS L 198 GLU L 199 -1 O GLU L 199 N LYS L 151 SSBOND 1 CYS A 302 CYS A 333 1555 1555 2.01 SSBOND 2 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 3 CYS H 143 CYS H 198 1555 1555 2.04 SSBOND 4 CYS L 23 CYS L 92 1555 1555 2.03 SSBOND 5 CYS L 138 CYS L 198 1555 1555 1.96 CRYST1 164.770 66.888 79.410 90.00 113.05 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006069 0.000000 0.002582 0.00000 SCALE2 0.000000 0.014950 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013685 0.00000