HEADER TRANSCRIPTION REPRESSOR, CELL CYCLE 07-SEP-07 2R7G TITLE STRUCTURE OF THE RETINOBLASTOMA PROTEIN POCKET DOMAIN IN COMPLEX WITH TITLE 2 ADENOVIRUS E1A CR1 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOBLASTOMA-ASSOCIATED PROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: POCKET DOMAIN, DELETION OF RESIDUES 582-642; COMPND 5 SYNONYM: PP110; P105-RB; RB; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: EARLY E1A 32 KDA PROTEIN; COMPND 9 CHAIN: B, D, E; COMPND 10 FRAGMENT: CR1 DOMAIN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX4T-1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS 5; SOURCE 13 ORGANISM_TAXID: 28285; SOURCE 14 STRAIN: TYPE 5; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PGEX4T-1 KEYWDS RETINOBLASTOMA PROTEIN, E1A, E2F DISPLACEMENT, TRANSCRIPTION KEYWDS 2 REPRESSOR, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR X.LIU,R.MARMORSTEIN REVDAT 7 21-FEB-24 2R7G 1 REMARK REVDAT 6 25-OCT-17 2R7G 1 REMARK REVDAT 5 26-JUL-17 2R7G 1 SOURCE REMARK REVDAT 4 13-JUL-11 2R7G 1 VERSN REVDAT 3 24-FEB-09 2R7G 1 VERSN REVDAT 2 20-NOV-07 2R7G 1 JRNL REVDAT 1 02-OCT-07 2R7G 0 JRNL AUTH X.LIU,R.MARMORSTEIN JRNL TITL STRUCTURE OF THE RETINOBLASTOMA PROTEIN BOUND TO ADENOVIRUS JRNL TITL 2 E1A REVEALS THE MOLECULAR BASIS FOR VIRAL ONCOPROTEIN JRNL TITL 3 INACTIVATION OF A TUMOR SUPPRESSOR JRNL REF GENES DEV. V. 21 2711 2007 JRNL REFN ISSN 0890-9369 JRNL PMID 17974914 JRNL DOI 10.1101/GAD.1590607 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 115475 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 11573 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3627 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 403 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5775 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 482 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : 0.32000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.09000 REMARK 3 B23 (A**2) : 0.37000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.097 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.237 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5955 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8025 ; 1.256 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 699 ; 4.631 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 269 ;36.808 ;23.858 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1144 ;15.904 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;12.195 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 910 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4326 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3281 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4157 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 552 ; 0.115 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 53 ; 0.213 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.212 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3646 ; 0.860 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5766 ; 1.405 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2594 ; 2.206 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2259 ; 3.332 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 380 A 785 REMARK 3 ORIGIN FOR THE GROUP (A): 0.1055 0.2593 0.6307 REMARK 3 T TENSOR REMARK 3 T11: -0.0437 T22: -0.0448 REMARK 3 T33: -0.0399 T12: -0.0009 REMARK 3 T13: -0.0189 T23: 0.0263 REMARK 3 L TENSOR REMARK 3 L11: 0.8530 L22: 0.6726 REMARK 3 L33: 1.2205 L12: -0.0569 REMARK 3 L13: -0.0979 L23: 0.0403 REMARK 3 S TENSOR REMARK 3 S11: 0.0388 S12: 0.1643 S13: 0.0659 REMARK 3 S21: -0.2048 S22: -0.0212 S23: 0.0906 REMARK 3 S31: 0.0317 S32: -0.1991 S33: -0.0176 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 40 B 49 REMARK 3 ORIGIN FOR THE GROUP (A): -6.6310 -5.2427 14.1492 REMARK 3 T TENSOR REMARK 3 T11: -0.0571 T22: -0.0612 REMARK 3 T33: -0.0494 T12: -0.0373 REMARK 3 T13: -0.0242 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 7.8664 L22: 3.4987 REMARK 3 L33: 9.6675 L12: -3.2532 REMARK 3 L13: -0.4844 L23: -1.2412 REMARK 3 S TENSOR REMARK 3 S11: 0.2488 S12: -0.0847 S13: 0.0306 REMARK 3 S21: -0.3015 S22: 0.0190 S23: 0.1953 REMARK 3 S31: 0.4032 S32: -0.4823 S33: -0.2678 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 380 C 785 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9239 -13.6436 32.4229 REMARK 3 T TENSOR REMARK 3 T11: -0.0549 T22: -0.0291 REMARK 3 T33: -0.0414 T12: -0.0015 REMARK 3 T13: -0.0258 T23: 0.0283 REMARK 3 L TENSOR REMARK 3 L11: 0.9331 L22: 0.8510 REMARK 3 L33: 1.1186 L12: -0.0566 REMARK 3 L13: -0.0979 L23: 0.0049 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: -0.2900 S13: -0.1018 REMARK 3 S21: 0.1523 S22: 0.0133 S23: -0.0890 REMARK 3 S31: 0.1675 S32: 0.0427 S33: -0.0131 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 40 D 49 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7209 -21.4607 18.9919 REMARK 3 T TENSOR REMARK 3 T11: -0.0344 T22: -0.0686 REMARK 3 T33: -0.0559 T12: -0.0408 REMARK 3 T13: -0.0084 T23: 0.0379 REMARK 3 L TENSOR REMARK 3 L11: 5.7954 L22: 6.0318 REMARK 3 L33: 10.4035 L12: -4.4347 REMARK 3 L13: 0.8894 L23: 0.5912 REMARK 3 S TENSOR REMARK 3 S11: 0.0633 S12: -0.4209 S13: -0.1232 REMARK 3 S21: 0.0020 S22: 0.1471 S23: -0.0427 REMARK 3 S31: 0.5732 S32: -0.1259 S33: -0.2103 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 40 E 48 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1919 -13.0292 -30.0390 REMARK 3 T TENSOR REMARK 3 T11: 0.0003 T22: 0.0002 REMARK 3 T33: 0.0000 T12: 0.0001 REMARK 3 T13: -0.0003 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 11.7415 L22: 13.8033 REMARK 3 L33: 28.1912 L12: 5.5691 REMARK 3 L13: -3.0062 L23: -0.2428 REMARK 3 S TENSOR REMARK 3 S11: -0.0211 S12: 0.5892 S13: 0.0746 REMARK 3 S21: 0.5535 S22: 0.2573 S23: -0.4185 REMARK 3 S31: 0.9577 S32: 0.0877 S33: -0.2362 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2R7G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 121240 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.671 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.39200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15MM MAGNESIUM ACETATE TETRAHYDRATE, REMARK 280 50MM SODIUM CACODYLATE TRIHYDRATE, PH 6.0 AND 1.7M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7240 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 503 REMARK 465 GLN A 504 REMARK 465 ASN A 505 REMARK 465 LEU A 506 REMARK 465 ASP A 507 REMARK 465 SER A 508 REMARK 465 ARG A 579 REMARK 465 GLU A 580 REMARK 465 GLY A 581 REMARK 465 PRO A 786 REMARK 465 ARG A 787 REMARK 465 SER C 503 REMARK 465 GLN C 504 REMARK 465 ASN C 505 REMARK 465 LEU C 506 REMARK 465 ASP C 507 REMARK 465 SER C 508 REMARK 465 GLU C 580 REMARK 465 GLY C 581 REMARK 465 PRO C 786 REMARK 465 ARG C 787 REMARK 465 LEU E 49 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 436 CG CD OE1 NE2 REMARK 470 GLU A 440 CG CD OE1 OE2 REMARK 470 GLN C 436 CG CD OE1 NE2 REMARK 470 GLU C 440 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 501 -95.15 -66.54 REMARK 500 SER A 560 -47.03 -154.58 REMARK 500 ILE A 744 -74.33 -95.68 REMARK 500 GLU A 746 -87.60 -119.84 REMARK 500 SER C 501 -86.78 -68.83 REMARK 500 SER C 560 -48.16 -157.69 REMARK 500 ASP C 718 -90.77 -52.81 REMARK 500 LEU C 719 85.37 47.63 REMARK 500 ILE C 744 -84.66 -101.33 REMARK 500 GLU C 746 -108.31 52.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 901 DBREF 2R7G A 380 581 UNP P06400 RB_HUMAN 380 581 DBREF 2R7G A 643 787 UNP P06400 RB_HUMAN 643 787 DBREF 2R7G B 40 49 UNP P03255 E1A_ADE05 40 49 DBREF 2R7G C 380 581 UNP P06400 RB_HUMAN 380 581 DBREF 2R7G C 643 787 UNP P06400 RB_HUMAN 643 787 DBREF 2R7G D 40 49 UNP P03255 E1A_ADE05 40 49 DBREF 2R7G E 40 49 UNP P03255 E1A_ADE05 40 49 SEQRES 1 A 347 ASN THR ILE GLN GLN LEU MET MET ILE LEU ASN SER ALA SEQRES 2 A 347 SER ASP GLN PRO SER GLU ASN LEU ILE SER TYR PHE ASN SEQRES 3 A 347 ASN CYS THR VAL ASN PRO LYS GLU SER ILE LEU LYS ARG SEQRES 4 A 347 VAL LYS ASP ILE GLY TYR ILE PHE LYS GLU LYS PHE ALA SEQRES 5 A 347 LYS ALA VAL GLY GLN GLY CYS VAL GLU ILE GLY SER GLN SEQRES 6 A 347 ARG TYR LYS LEU GLY VAL ARG LEU TYR TYR ARG VAL MET SEQRES 7 A 347 GLU SER MET LEU LYS SER GLU GLU GLU ARG LEU SER ILE SEQRES 8 A 347 GLN ASN PHE SER LYS LEU LEU ASN ASP ASN ILE PHE HIS SEQRES 9 A 347 MET SER LEU LEU ALA CYS ALA LEU GLU VAL VAL MET ALA SEQRES 10 A 347 THR TYR SER ARG SER THR SER GLN ASN LEU ASP SER GLY SEQRES 11 A 347 THR ASP LEU SER PHE PRO TRP ILE LEU ASN VAL LEU ASN SEQRES 12 A 347 LEU LYS ALA PHE ASP PHE TYR LYS VAL ILE GLU SER PHE SEQRES 13 A 347 ILE LYS ALA GLU GLY ASN LEU THR ARG GLU MET ILE LYS SEQRES 14 A 347 HIS LEU GLU ARG CYS GLU HIS ARG ILE MET GLU SER LEU SEQRES 15 A 347 ALA TRP LEU SER ASP SER PRO LEU PHE ASP LEU ILE LYS SEQRES 16 A 347 GLN SER LYS ASP ARG GLU GLY LYS SER THR SER LEU SER SEQRES 17 A 347 LEU PHE TYR LYS LYS VAL TYR ARG LEU ALA TYR LEU ARG SEQRES 18 A 347 LEU ASN THR LEU CYS GLU ARG LEU LEU SER GLU HIS PRO SEQRES 19 A 347 GLU LEU GLU HIS ILE ILE TRP THR LEU PHE GLN HIS THR SEQRES 20 A 347 LEU GLN ASN GLU TYR GLU LEU MET ARG ASP ARG HIS LEU SEQRES 21 A 347 ASP GLN ILE MET MET CYS SER MET TYR GLY ILE CYS LYS SEQRES 22 A 347 VAL LYS ASN ILE ASP LEU LYS PHE LYS ILE ILE VAL THR SEQRES 23 A 347 ALA TYR LYS ASP LEU PRO HIS ALA VAL GLN GLU THR PHE SEQRES 24 A 347 LYS ARG VAL LEU ILE LYS GLU GLU GLU TYR ASP SER ILE SEQRES 25 A 347 ILE VAL PHE TYR ASN SER VAL PHE MET GLN ARG LEU LYS SEQRES 26 A 347 THR ASN ILE LEU GLN TYR ALA SER THR ARG PRO PRO THR SEQRES 27 A 347 LEU SER PRO ILE PRO HIS ILE PRO ARG SEQRES 1 B 10 PRO PRO THR LEU HIS GLU LEU TYR ASP LEU SEQRES 1 C 347 ASN THR ILE GLN GLN LEU MET MET ILE LEU ASN SER ALA SEQRES 2 C 347 SER ASP GLN PRO SER GLU ASN LEU ILE SER TYR PHE ASN SEQRES 3 C 347 ASN CYS THR VAL ASN PRO LYS GLU SER ILE LEU LYS ARG SEQRES 4 C 347 VAL LYS ASP ILE GLY TYR ILE PHE LYS GLU LYS PHE ALA SEQRES 5 C 347 LYS ALA VAL GLY GLN GLY CYS VAL GLU ILE GLY SER GLN SEQRES 6 C 347 ARG TYR LYS LEU GLY VAL ARG LEU TYR TYR ARG VAL MET SEQRES 7 C 347 GLU SER MET LEU LYS SER GLU GLU GLU ARG LEU SER ILE SEQRES 8 C 347 GLN ASN PHE SER LYS LEU LEU ASN ASP ASN ILE PHE HIS SEQRES 9 C 347 MET SER LEU LEU ALA CYS ALA LEU GLU VAL VAL MET ALA SEQRES 10 C 347 THR TYR SER ARG SER THR SER GLN ASN LEU ASP SER GLY SEQRES 11 C 347 THR ASP LEU SER PHE PRO TRP ILE LEU ASN VAL LEU ASN SEQRES 12 C 347 LEU LYS ALA PHE ASP PHE TYR LYS VAL ILE GLU SER PHE SEQRES 13 C 347 ILE LYS ALA GLU GLY ASN LEU THR ARG GLU MET ILE LYS SEQRES 14 C 347 HIS LEU GLU ARG CYS GLU HIS ARG ILE MET GLU SER LEU SEQRES 15 C 347 ALA TRP LEU SER ASP SER PRO LEU PHE ASP LEU ILE LYS SEQRES 16 C 347 GLN SER LYS ASP ARG GLU GLY LYS SER THR SER LEU SER SEQRES 17 C 347 LEU PHE TYR LYS LYS VAL TYR ARG LEU ALA TYR LEU ARG SEQRES 18 C 347 LEU ASN THR LEU CYS GLU ARG LEU LEU SER GLU HIS PRO SEQRES 19 C 347 GLU LEU GLU HIS ILE ILE TRP THR LEU PHE GLN HIS THR SEQRES 20 C 347 LEU GLN ASN GLU TYR GLU LEU MET ARG ASP ARG HIS LEU SEQRES 21 C 347 ASP GLN ILE MET MET CYS SER MET TYR GLY ILE CYS LYS SEQRES 22 C 347 VAL LYS ASN ILE ASP LEU LYS PHE LYS ILE ILE VAL THR SEQRES 23 C 347 ALA TYR LYS ASP LEU PRO HIS ALA VAL GLN GLU THR PHE SEQRES 24 C 347 LYS ARG VAL LEU ILE LYS GLU GLU GLU TYR ASP SER ILE SEQRES 25 C 347 ILE VAL PHE TYR ASN SER VAL PHE MET GLN ARG LEU LYS SEQRES 26 C 347 THR ASN ILE LEU GLN TYR ALA SER THR ARG PRO PRO THR SEQRES 27 C 347 LEU SER PRO ILE PRO HIS ILE PRO ARG SEQRES 1 D 10 PRO PRO THR LEU HIS GLU LEU TYR ASP LEU SEQRES 1 E 10 PRO PRO THR LEU HIS GLU LEU TYR ASP LEU HET SO4 A 902 5 HET SO4 C 901 5 HETNAM SO4 SULFATE ION FORMUL 6 SO4 2(O4 S 2-) FORMUL 8 HOH *482(H2 O) HELIX 1 1 THR A 381 ALA A 392 1 12 HELIX 2 2 SER A 397 ASN A 406 1 10 HELIX 3 3 PRO A 411 GLY A 435 1 25 HELIX 4 4 CYS A 438 SER A 469 1 32 HELIX 5 5 PHE A 473 ASN A 478 1 6 HELIX 6 6 ASP A 479 THR A 502 1 24 HELIX 7 7 PRO A 515 ASN A 522 1 8 HELIX 8 8 LYS A 524 LYS A 530 1 7 HELIX 9 9 VAL A 531 GLU A 539 1 9 HELIX 10 10 THR A 543 SER A 560 1 18 HELIX 11 11 LEU A 561 LEU A 564 5 4 HELIX 12 12 PRO A 568 ASP A 578 1 11 HELIX 13 13 SER A 644 LEU A 670 1 27 HELIX 14 14 GLU A 675 GLU A 691 1 17 HELIX 15 15 TYR A 692 ARG A 696 5 5 HELIX 16 16 HIS A 699 LYS A 715 1 17 HELIX 17 17 LYS A 720 LYS A 729 1 10 HELIX 18 18 GLN A 736 ARG A 741 1 6 HELIX 19 19 SER A 751 VAL A 759 1 9 HELIX 20 20 VAL A 759 TYR A 771 1 13 HELIX 21 21 THR B 42 TYR B 47 1 6 HELIX 22 22 THR C 381 ALA C 392 1 12 HELIX 23 23 SER C 397 ASN C 406 1 10 HELIX 24 24 PRO C 411 GLY C 435 1 25 HELIX 25 25 CYS C 438 SER C 469 1 32 HELIX 26 26 PHE C 473 ASN C 478 1 6 HELIX 27 27 ASP C 479 THR C 502 1 24 HELIX 28 28 PRO C 515 ASN C 522 1 8 HELIX 29 29 LYS C 524 LYS C 530 1 7 HELIX 30 30 VAL C 531 GLU C 539 1 9 HELIX 31 31 THR C 543 SER C 560 1 18 HELIX 32 32 LEU C 561 LEU C 564 5 4 HELIX 33 33 PRO C 568 ARG C 579 1 12 HELIX 34 34 SER C 644 LEU C 670 1 27 HELIX 35 35 GLU C 675 GLU C 691 1 17 HELIX 36 36 TYR C 692 ARG C 696 5 5 HELIX 37 37 HIS C 699 LYS C 715 1 17 HELIX 38 38 LYS C 720 LYS C 729 1 10 HELIX 39 39 GLN C 736 ARG C 741 1 6 HELIX 40 40 SER C 751 VAL C 759 1 9 HELIX 41 41 VAL C 759 GLN C 770 1 12 HELIX 42 42 TYR C 771 SER C 773 5 3 HELIX 43 43 THR D 42 TYR D 47 1 6 SHEET 1 A 2 VAL A 742 LEU A 743 0 SHEET 2 A 2 TYR A 749 ASP A 750 -1 O ASP A 750 N VAL A 742 SHEET 1 B 2 VAL C 742 LEU C 743 0 SHEET 2 B 2 TYR C 749 ASP C 750 -1 O ASP C 750 N VAL C 742 CISPEP 1 PHE A 514 PRO A 515 0 2.37 CISPEP 2 PHE C 514 PRO C 515 0 5.57 SITE 1 AC1 11 ASN A 406 CYS A 407 THR A 408 ASN A 472 SITE 2 AC1 11 PHE A 473 SER A 474 HOH A1001 HOH A1009 SITE 3 AC1 11 HOH A1087 LYS C 574 HOH C1076 SITE 1 AC2 11 LYS A 574 HOH A1060 ASN C 406 CYS C 407 SITE 2 AC2 11 THR C 408 ASN C 472 PHE C 473 SER C 474 SITE 3 AC2 11 HOH C1003 HOH C1011 HOH C1088 CRYST1 57.713 57.706 92.268 94.34 92.69 105.79 P 1 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017327 0.004899 0.001271 0.00000 SCALE2 0.000000 0.018009 0.001664 0.00000 SCALE3 0.000000 0.000000 0.010896 0.00000