HEADER TRANSFERASE/RNA 10-SEP-07 2R7W TITLE CRYSTAL STRUCTURE OF ROTAVIRUS SA11 VP1/RNA (UGUGACC)/MRNA 5'-CAP TITLE 2 (M7GPPPG) COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*UP*GP*UP*GP*AP*CP*C)-3'); COMPND 3 CHAIN: X; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA-DEPENDENT RNA POLYMERASE; COMPND 7 CHAIN: A; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: SIMIAN ROTAVIRUS; SOURCE 5 ORGANISM_TAXID: 10922; SOURCE 6 STRAIN: SA11; SOURCE 7 GENE: GENE 1; SOURCE 8 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 9 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: SF21; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PCRBAC KEYWDS VIRAL PROTEIN, RNA-DEPENDENT RNA POLYMERASE, SINGLE SUBUNIT KEYWDS 2 POLYMERASE FOLD, FINGERS, PALM, THUMB, RIGHT HAND CONFIGURATION, KEYWDS 3 RNA-DIRECTED RNA POLYMERASE, TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.LU,S.C.HARRISON,Y.J.TAO,J.T.PATTON,M.L.NIBERT REVDAT 5 21-FEB-24 2R7W 1 REMARK DBREF REVDAT 4 25-OCT-17 2R7W 1 REMARK REVDAT 3 14-APR-10 2R7W 1 JRNL REVDAT 2 24-FEB-09 2R7W 1 VERSN REVDAT 1 29-JUL-08 2R7W 0 JRNL AUTH X.LU,S.M.MCDONALD,M.A.TORTORICI,Y.J.TAO, JRNL AUTH 2 R.VASQUEZ-DEL CARPIO,M.L.NIBERT,J.T.PATTON,S.C.HARRISON JRNL TITL MECHANISM FOR COORDINATED RNA PACKAGING AND GENOME JRNL TITL 2 REPLICATION BY ROTAVIRUS POLYMERASE VP1. JRNL REF STRUCTURE V. 16 1678 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 19000820 JRNL DOI 10.1016/J.STR.2008.09.006 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.5 REMARK 3 NUMBER OF REFLECTIONS : 32893 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2620 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8699 REMARK 3 NUCLEIC ACID ATOMS : 145 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 32.81 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 4 : GTP.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2R7W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044535. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : SUPERBEND (5.0 T, SINGLE POLE) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35449 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 45.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.39700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: SHARP, DM 4.2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 MICROLITER OF VP1 AT 10 MG/ML IN 25 REMARK 280 MM NA-HEPES, PH 7.8, 100 MM NACL MIXED WITH 2 MICROLITER OF REMARK 280 CRYSTALLIZATION BUFFER [25 MM NA-MES, PH 6.5, 1.5% (W/V) PEG REMARK 280 3350] AND ALLOWING THE DROP TO EQUILIBRATE AT 12 C BY HANGING- REMARK 280 DROP VAPOR DIFFUSION WITH A WELL SOLUTION IDENTICAL IN REMARK 280 COMPOSITION TO THE DROP EXCEPT FOR THE PROTEIN. WITH MICRO- REMARK 280 SEEDING, THIN, PLATE-LIKE CRYSTALS APPEARED AFTER 1 DAY AND GREW REMARK 280 TO FULL SIZE IN ABOUT TWO WEEKS., PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.17600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.89600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.37450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.89600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.17600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.37450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 19 REMARK 465 SER A 20 REMARK 465 ALA A 21 REMARK 465 LEU A 347 REMARK 465 LYS A 348 REMARK 465 THR A 349 REMARK 465 GLU A 350 REMARK 465 TYR A 351 REMARK 465 THR A 352 REMARK 465 GLU A 353 REMARK 465 ASN A 354 REMARK 465 VAL A 355 REMARK 465 ASP A 356 REMARK 465 ASP A 357 REMARK 465 PRO A 1089 REMARK 465 HIS A 1090 REMARK 465 HIS A 1091 REMARK 465 HIS A 1092 REMARK 465 HIS A 1093 REMARK 465 HIS A 1094 REMARK 465 HIS A 1095 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE1 HIS A 185 O1A GTP A 1201 1.94 REMARK 500 CB TYR A 82 C5' GTP A 1201 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A1003 CB CYS A1003 SG -0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A1027 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 50 33.15 -74.17 REMARK 500 ASN A 51 14.26 -165.47 REMARK 500 ASP A 80 -145.89 -153.27 REMARK 500 LYS A 81 64.57 -155.25 REMARK 500 TYR A 82 30.79 38.40 REMARK 500 ASN A 83 -119.20 -86.87 REMARK 500 ALA A 84 -52.75 59.21 REMARK 500 LEU A 102 16.87 -54.61 REMARK 500 GLU A 106 -85.99 -57.97 REMARK 500 ASN A 112 46.43 -71.14 REMARK 500 SER A 128 -18.18 -37.39 REMARK 500 MET A 130 -10.40 -145.33 REMARK 500 LEU A 135 46.21 -86.30 REMARK 500 ALA A 157 -116.10 42.58 REMARK 500 PHE A 218 -73.31 -131.83 REMARK 500 SER A 238 -20.24 -162.52 REMARK 500 ASN A 273 2.26 -69.73 REMARK 500 LYS A 274 167.40 -49.79 REMARK 500 VAL A 301 -66.56 -122.96 REMARK 500 ARG A 314 61.33 60.44 REMARK 500 PRO A 320 -34.32 -39.88 REMARK 500 MET A 339 -39.31 -38.91 REMARK 500 SER A 398 -168.50 -100.68 REMARK 500 ARG A 412 29.06 -142.22 REMARK 500 ALA A 429 0.47 -64.36 REMARK 500 GLU A 431 -2.79 57.40 REMARK 500 PRO A 439 154.79 -38.03 REMARK 500 ASN A 442 -157.41 -95.02 REMARK 500 ILE A 464 72.15 -109.72 REMARK 500 SER A 495 -148.91 45.52 REMARK 500 ASN A 512 0.81 -65.72 REMARK 500 PHE A 534 -78.57 -69.57 REMARK 500 ALA A 590 -154.74 -89.79 REMARK 500 LYS A 618 -64.71 -96.00 REMARK 500 VAL A 673 -28.50 -141.21 REMARK 500 ALA A 691 59.77 -102.28 REMARK 500 THR A 745 -136.45 -135.69 REMARK 500 THR A 807 -33.21 -38.79 REMARK 500 LEU A 819 -80.79 -74.44 REMARK 500 PHE A 821 -69.90 -106.39 REMARK 500 SER A 822 -145.97 -69.21 REMARK 500 ASN A 824 -88.61 -106.75 REMARK 500 ASN A 825 -80.63 55.93 REMARK 500 LYS A 863 70.48 175.25 REMARK 500 PRO A 864 108.27 -31.72 REMARK 500 VAL A 865 -172.02 -56.67 REMARK 500 PHE A 867 134.59 -178.87 REMARK 500 SER A 869 -98.71 38.17 REMARK 500 SER A 870 11.62 49.77 REMARK 500 LYS A 882 -56.06 -27.94 REMARK 500 REMARK 500 THIS ENTRY HAS 56 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 1201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2R7O RELATED DB: PDB REMARK 900 RELATED ID: 2R7Q RELATED DB: PDB REMARK 900 RELATED ID: 2R7R RELATED DB: PDB REMARK 900 RELATED ID: 2R7S RELATED DB: PDB REMARK 900 RELATED ID: 2R7T RELATED DB: PDB REMARK 900 RELATED ID: 2R7U RELATED DB: PDB REMARK 900 RELATED ID: 2R7V RELATED DB: PDB REMARK 900 RELATED ID: 2R7X RELATED DB: PDB DBREF 2R7W X 1101 1107 PDB 2R7W 2R7W 1101 1107 DBREF 2R7W A 1 1089 UNP O37061 O37061_9REOV 1 1089 SEQRES 1 X 7 U G U G A C C SEQRES 1 A 1095 MET GLY LYS TYR ASN LEU ILE LEU SER GLU TYR LEU SER SEQRES 2 A 1095 PHE ILE TYR ASN SER GLN SER ALA VAL GLN ILE PRO ILE SEQRES 3 A 1095 TYR TYR SER SER ASN SER GLU LEU GLU ASN ARG CYS ILE SEQRES 4 A 1095 GLU PHE HIS SER LYS CYS LEU GLU ASN SER LYS ASN GLY SEQRES 5 A 1095 LEU SER LEU ARG LYS LEU PHE VAL GLU TYR ASN ASP VAL SEQRES 6 A 1095 ILE GLU ASN ALA THR LEU LEU SER ILE LEU SER TYR SER SEQRES 7 A 1095 TYR ASP LYS TYR ASN ALA VAL GLU ARG LYS LEU VAL LYS SEQRES 8 A 1095 TYR ALA LYS GLY LYS PRO LEU GLU ALA ASP LEU THR VAL SEQRES 9 A 1095 ASN GLU LEU ASP TYR GLU ASN ASN LYS MET THR SER GLU SEQRES 10 A 1095 LEU PHE PRO THR ALA GLU GLU TYR THR ASP SER LEU MET SEQRES 11 A 1095 ASP PRO ALA ILE LEU THR SER LEU SER SER ASN LEU ASN SEQRES 12 A 1095 ALA VAL MET PHE TRP LEU GLU LYS HIS GLU ASN ASP VAL SEQRES 13 A 1095 ALA GLU LYS LEU LYS VAL TYR LYS ARG ARG LEU ASP LEU SEQRES 14 A 1095 PHE THR ILE VAL ALA SER THR ILE ASN LYS TYR GLY VAL SEQRES 15 A 1095 PRO ARG HIS ASN ALA LYS TYR ARG TYR GLU TYR ASP VAL SEQRES 16 A 1095 MET LYS ASP LYS PRO TYR TYR LEU VAL THR TRP ALA ASN SEQRES 17 A 1095 SER SER ILE GLU MET LEU MET SER VAL PHE SER HIS ASP SEQRES 18 A 1095 ASP TYR LEU ILE ALA LYS GLU LEU ILE VAL LEU SER TYR SEQRES 19 A 1095 SER ASN ARG SER THR LEU ALA LYS LEU VAL SER SER PRO SEQRES 20 A 1095 MET SER ILE LEU VAL ALA LEU VAL ASP ILE ASN GLY THR SEQRES 21 A 1095 PHE ILE THR ASN GLU GLU LEU GLU LEU GLU PHE SER ASN SEQRES 22 A 1095 LYS TYR VAL ARG ALA ILE VAL PRO ASP GLN THR PHE ASP SEQRES 23 A 1095 GLU LEU ASN GLN MET LEU ASP ASN MET ARG LYS ALA GLY SEQRES 24 A 1095 LEU VAL ASP ILE PRO LYS MET ILE GLN ASP TRP LEU VAL SEQRES 25 A 1095 ASP ARG SER ILE GLU LYS PHE PRO LEU MET ALA LYS ILE SEQRES 26 A 1095 TYR SER TRP SER PHE HIS VAL GLY PHE ARG LYS GLN LYS SEQRES 27 A 1095 MET LEU ASP ALA ALA LEU ASP GLN LEU LYS THR GLU TYR SEQRES 28 A 1095 THR GLU ASN VAL ASP ASP GLU MET TYR ARG GLU TYR THR SEQRES 29 A 1095 MET LEU ILE ARG ASP GLU VAL VAL LYS MET LEU GLU GLU SEQRES 30 A 1095 PRO VAL LYS HIS ASP ASP HIS LEU LEU ARG ASP SER GLU SEQRES 31 A 1095 LEU ALA GLY LEU LEU SER MET SER SER ALA SER ASN GLY SEQRES 32 A 1095 GLU SER ARG GLN LEU LYS PHE GLY ARG LYS THR ILE PHE SEQRES 33 A 1095 SER THR LYS LYS ASN MET HIS VAL MET ASP ASP MET ALA SEQRES 34 A 1095 ASN GLU ARG TYR THR PRO GLY ILE ILE PRO PRO VAL ASN SEQRES 35 A 1095 VAL ASP LYS PRO ILE PRO LEU GLY ARG ARG ASP VAL PRO SEQRES 36 A 1095 GLY ARG ARG THR ARG ILE ILE PHE ILE LEU PRO TYR GLU SEQRES 37 A 1095 TYR PHE ILE ALA GLN HIS ALA VAL VAL GLU LYS MET LEU SEQRES 38 A 1095 ILE TYR ALA LYS HIS THR ARG GLU TYR ALA GLU PHE TYR SEQRES 39 A 1095 SER GLN SER ASN GLN LEU LEU SER TYR GLY ASP VAL THR SEQRES 40 A 1095 ARG PHE LEU SER ASN ASN THR MET VAL LEU TYR THR ASP SEQRES 41 A 1095 VAL SER GLN TRP ASP SER SER GLN HIS ASN THR GLN PRO SEQRES 42 A 1095 PHE ARG LYS GLY ILE ILE MET GLY LEU ASP ILE LEU ALA SEQRES 43 A 1095 ASN MET THR ASN ASP ALA LYS VAL LEU GLN THR LEU ASN SEQRES 44 A 1095 LEU TYR LYS GLN THR GLN ILE ASN LEU MET ASP SER TYR SEQRES 45 A 1095 VAL GLN ILE PRO ASP GLY ASN VAL ILE LYS LYS ILE GLN SEQRES 46 A 1095 TYR GLY ALA VAL ALA SER GLY GLU LYS GLN THR LYS ALA SEQRES 47 A 1095 ALA ASN SER ILE ALA ASN LEU ALA LEU ILE LYS THR VAL SEQRES 48 A 1095 LEU SER ARG ILE SER ASN LYS HIS SER PHE ALA THR LYS SEQRES 49 A 1095 ILE ILE ARG VAL ASP GLY ASP ASP ASN TYR ALA VAL LEU SEQRES 50 A 1095 GLN PHE ASN THR GLU VAL THR LYS GLN MET ILE GLN ASP SEQRES 51 A 1095 VAL SER ASN ASP VAL ARG GLU THR TYR ALA ARG MET ASN SEQRES 52 A 1095 ALA LYS VAL LYS ALA LEU VAL SER THR VAL GLY ILE GLU SEQRES 53 A 1095 ILE ALA LYS ARG TYR ILE ALA GLY GLY LYS ILE PHE PHE SEQRES 54 A 1095 ARG ALA GLY ILE ASN LEU LEU ASN ASN GLU LYS ARG GLY SEQRES 55 A 1095 GLN SER THR GLN TRP ASP GLN ALA ALA ILE LEU TYR SER SEQRES 56 A 1095 ASN TYR ILE VAL ASN ARG LEU ARG GLY PHE GLU THR ASP SEQRES 57 A 1095 ARG GLU PHE ILE LEU THR LYS ILE MET GLN MET THR SER SEQRES 58 A 1095 VAL ALA ILE THR GLY SER LEU ARG LEU PHE PRO SER GLU SEQRES 59 A 1095 ARG VAL LEU THR THR ASN SER THR PHE LYS VAL PHE ASP SEQRES 60 A 1095 SER GLU ASP PHE ILE ILE GLU TYR GLY THR THR VAL ASP SEQRES 61 A 1095 GLU VAL TYR ILE GLN ARG ALA PHE MET SER LEU SER SER SEQRES 62 A 1095 GLN LYS SER GLY ILE ALA ASP GLU ILE ALA ALA SER SER SEQRES 63 A 1095 THR PHE LYS ASN TYR VAL THR ARG LEU SER GLU GLN LEU SEQRES 64 A 1095 LEU PHE SER LYS ASN ASN ILE VAL SER ARG GLY ILE ALA SEQRES 65 A 1095 LEU THR GLU LYS ALA LYS LEU ASN SER TYR ALA PRO ILE SEQRES 66 A 1095 SER LEU GLU LYS ARG ARG ALA GLN ILE SER ALA LEU LEU SEQRES 67 A 1095 THR MET LEU GLN LYS PRO VAL THR PHE LYS SER SER LYS SEQRES 68 A 1095 ILE THR ILE ASN ASP ILE LEU ARG ASP ILE LYS PRO PHE SEQRES 69 A 1095 PHE THR VAL SER ASP ALA HIS LEU PRO ILE GLN TYR GLN SEQRES 70 A 1095 LYS PHE MET PRO THR LEU PRO ASP ASN VAL GLN TYR ILE SEQRES 71 A 1095 ILE GLN CYS ILE GLY SER ARG THR TYR GLN ILE GLU ASP SEQRES 72 A 1095 ASP GLY SER LYS SER ALA ILE SER ARG LEU ILE SER LYS SEQRES 73 A 1095 TYR SER VAL TYR LYS PRO SER ILE GLU GLU LEU TYR LYS SEQRES 74 A 1095 VAL ILE SER LEU HIS GLU ASN GLU ILE GLN LEU TYR LEU SEQRES 75 A 1095 ILE SER LEU GLY ILE PRO LYS ILE ASP ALA ASP THR TYR SEQRES 76 A 1095 VAL GLY SER LYS ILE TYR SER ARG ASP LYS TYR ARG ILE SEQRES 77 A 1095 LEU GLU SER TYR VAL TYR ASN LEU LEU SER ILE ASN TYR SEQRES 78 A 1095 GLY CYS TYR GLN LEU PHE ASP PHE ASN SER PRO ASP LEU SEQRES 79 A 1095 GLU LYS LEU ILE ARG ILE PRO PHE LYS GLY LYS ILE PRO SEQRES 80 A 1095 ALA VAL THR PHE ILE LEU HIS LEU TYR ALA LYS LEU GLU SEQRES 81 A 1095 VAL ILE ASN TYR ALA ILE LYS ASN GLY SER TRP ILE SER SEQRES 82 A 1095 LEU PHE CYS ASN TYR PRO LYS SER GLU MET ILE LYS LEU SEQRES 83 A 1095 TRP LYS LYS MET TRP ASN ILE THR SER LEU ARG SER PRO SEQRES 84 A 1095 TYR THR ASN ALA ASN PHE PHE GLN GLU PRO HIS HIS HIS SEQRES 85 A 1095 HIS HIS HIS HET GTP A1201 32 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE FORMUL 3 GTP C10 H16 N5 O14 P3 HELIX 1 1 LYS A 3 TYR A 16 1 14 HELIX 2 2 ASN A 31 LYS A 50 1 20 HELIX 3 3 LEU A 55 TYR A 62 1 8 HELIX 4 4 TYR A 62 ALA A 69 1 8 HELIX 5 5 ALA A 84 VAL A 90 1 7 HELIX 6 6 LYS A 91 ALA A 93 5 3 HELIX 7 7 LEU A 107 ASN A 111 5 5 HELIX 8 8 MET A 114 PHE A 119 1 6 HELIX 9 9 THR A 126 MET A 130 5 5 HELIX 10 10 SER A 137 HIS A 152 1 16 HELIX 11 11 VAL A 156 LYS A 179 1 24 HELIX 12 12 GLU A 192 LYS A 197 1 6 HELIX 13 13 TYR A 202 MET A 215 1 14 HELIX 14 14 SER A 219 SER A 233 1 15 HELIX 15 15 THR A 239 SER A 246 1 8 HELIX 16 16 PRO A 247 VAL A 252 1 6 HELIX 17 17 PRO A 281 ALA A 298 1 18 HELIX 18 18 VAL A 301 LEU A 311 1 11 HELIX 19 19 PHE A 319 SER A 329 1 11 HELIX 20 20 PHE A 330 GLY A 333 5 4 HELIX 21 21 LYS A 338 ASP A 345 1 8 HELIX 22 22 TYR A 360 HIS A 381 1 22 HELIX 23 23 ASP A 383 ASP A 388 1 6 HELIX 24 24 ASP A 388 MET A 397 1 10 HELIX 25 25 LYS A 420 ALA A 429 1 10 HELIX 26 26 TYR A 467 HIS A 486 1 20 HELIX 27 27 ASN A 498 PHE A 509 1 12 HELIX 28 28 VAL A 521 SER A 526 1 6 HELIX 29 29 SER A 527 ASN A 547 1 21 HELIX 30 30 ASP A 551 ASP A 570 1 20 HELIX 31 31 GLN A 595 ASN A 617 1 23 HELIX 32 32 THR A 644 ARG A 661 1 18 HELIX 33 33 THR A 705 GLY A 724 1 20 HELIX 34 34 ASP A 728 SER A 741 1 14 HELIX 35 35 SER A 753 THR A 759 1 7 HELIX 36 36 THR A 778 LEU A 791 1 14 HELIX 37 37 SER A 796 SER A 805 1 10 HELIX 38 38 SER A 805 LEU A 820 1 16 HELIX 39 39 ASN A 825 LYS A 838 1 14 HELIX 40 40 LEU A 839 SER A 841 5 3 HELIX 41 41 TYR A 842 LEU A 861 1 20 HELIX 42 42 ILE A 874 LYS A 882 1 9 HELIX 43 43 PRO A 904 GLY A 915 1 12 HELIX 44 44 SER A 928 SER A 938 1 11 HELIX 45 45 SER A 943 SER A 952 1 10 HELIX 46 46 HIS A 954 LEU A 965 1 12 HELIX 47 47 PRO A 968 VAL A 976 1 9 HELIX 48 48 SER A 978 LEU A 997 1 20 HELIX 49 49 SER A 1011 LEU A 1017 1 7 HELIX 50 50 ILE A 1026 GLY A 1049 1 24 HELIX 51 51 PRO A 1059 TRP A 1071 1 13 HELIX 52 52 SER A 1078 GLU A 1088 1 11 SHEET 1 A 4 GLN A 23 TYR A 28 0 SHEET 2 A 4 THR A 70 TYR A 77 -1 O THR A 70 N TYR A 28 SHEET 3 A 4 LEU A 748 PRO A 752 -1 O PHE A 751 N ILE A 74 SHEET 4 A 4 VAL A 742 ALA A 743 -1 N VAL A 742 O LEU A 750 SHEET 1 B 2 ILE A 257 THR A 263 0 SHEET 2 B 2 LEU A 269 VAL A 276 -1 O SER A 272 N THR A 260 SHEET 1 C 2 SER A 401 PHE A 410 0 SHEET 2 C 2 LYS A 413 LYS A 419 -1 O ILE A 415 N LEU A 408 SHEET 1 D 4 ARG A 460 PHE A 463 0 SHEET 2 D 4 ILE A 447 ARG A 452 -1 N GLY A 450 O ILE A 462 SHEET 3 D 4 SER A 571 PRO A 576 1 O TYR A 572 N ILE A 447 SHEET 4 D 4 ILE A 581 TYR A 586 -1 O ILE A 584 N VAL A 573 SHEET 1 E 4 PHE A 621 ASP A 629 0 SHEET 2 E 4 ASP A 632 PHE A 639 -1 O TYR A 634 N ARG A 627 SHEET 3 E 4 THR A 514 ASP A 520 -1 N LEU A 517 O ALA A 635 SHEET 4 E 4 LYS A 667 SER A 671 -1 O SER A 671 N VAL A 516 SHEET 1 F 3 ILE A 675 GLU A 676 0 SHEET 2 F 3 TYR A 681 ALA A 683 -1 O ILE A 682 N ILE A 675 SHEET 3 F 3 LYS A 686 PHE A 688 -1 O LYS A 686 N ALA A 683 SHEET 1 G 2 ILE A 872 THR A 873 0 SHEET 2 G 2 ILE A1073 THR A1074 1 O THR A1074 N ILE A 872 SHEET 1 H 3 PHE A 885 ALA A 890 0 SHEET 2 H 3 TRP A1051 CYS A1056 -1 O SER A1053 N SER A 888 SHEET 3 H 3 ILE A1018 ARG A1019 1 N ARG A1019 O LEU A1054 SITE 1 AC1 9 TYR A 16 ASP A 80 TYR A 82 SER A 137 SITE 2 AC1 9 SER A 140 HIS A 185 TYR A 189 GLY A 746 SITE 3 AC1 9 ARG A 749 CRYST1 76.352 112.749 143.792 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013097 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008869 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006954 0.00000