HEADER TRANSPORT PROTEIN 10-SEP-07 2R88 TITLE CRYSTAL STRUCTURE OF THE LONG-CHAIN FATTY ACID TRANSPORTER FADL MUTANT TITLE 2 DELTA S3 KINK COMPND MOL_ID: 1; COMPND 2 MOLECULE: LONG-CHAIN FATTY ACID TRANSPORT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: OUTER MEMBRANE FADL PROTEIN, OUTER MEMBRANE FLP PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: FADL, TTR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C43(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAD22 KEYWDS BETA BARREL, OUTER MEMBRANE PROTEIN, LIPID TRANSPORT, PHAGE KEYWDS 2 RECOGNITION, TRANSMEMBRANE, TRANSPORT, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.M.HEARN,D.R.PATEL,B.W.LEPORE,M.INDIC,B.VAN DEN BERG REVDAT 8 30-AUG-23 2R88 1 SEQADV REVDAT 7 09-JUN-09 2R88 1 REVDAT REVDAT 6 31-MAR-09 2R88 1 JRNL REVDAT 5 24-MAR-09 2R88 1 JRNL REVDAT 4 24-FEB-09 2R88 1 VERSN REVDAT 3 27-JAN-09 2R88 1 JRNL REVDAT 2 16-DEC-08 2R88 1 JRNL REVDAT 1 23-SEP-08 2R88 0 JRNL AUTH E.M.HEARN,D.R.PATEL,B.W.LEPORE,M.INDIC,B.VAN DEN BERG JRNL TITL TRANSMEMBRANE PASSAGE OF HYDROPHOBIC COMPOUNDS THROUGH A JRNL TITL 2 PROTEIN CHANNEL WALL JRNL REF NATURE V. 458 367 2009 JRNL REFN ISSN 0028-0836 JRNL PMID 19182779 JRNL DOI 10.1038/NATURE07678 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.VAN DEN BERG,P.N.BLACK,W.M.CLEMONS JR.,T.A.RAPOPORT REMARK 1 TITL CRYSTAL STRUCTURE OF THE LONG-CHAIN FATTY ACID TRANSPORTER REMARK 1 TITL 2 FADL REMARK 1 REF SCIENCE V. 304 1506 2004 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 31548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.262 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1618 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE : 0.4090 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 177 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.031 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5624 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.35000 REMARK 3 B22 (A**2) : 8.86000 REMARK 3 B33 (A**2) : -18.20600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM SIGMAA (A) : 0.37 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.39 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2R88 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044547. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL CUT REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33965 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 31.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.56300 REMARK 200 R SYM FOR SHELL (I) : 0.56300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1T16 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 5000 MME, 0.2M AMMONIUM REMARK 280 SULFATE, 0.1M MES, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 133.65850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 133.65850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.66350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.68500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.66350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.68500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 133.65850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.66350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.68500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 133.65850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.66350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 45.68500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLY A 2 REMARK 465 ASN A 237 REMARK 465 TYR A 238 REMARK 465 SER A 239 REMARK 465 SER A 240 REMARK 465 ASP A 241 REMARK 465 LEU A 242 REMARK 465 ASN A 243 REMARK 465 ARG A 244 REMARK 465 ALA A 245 REMARK 465 PHE A 246 REMARK 465 ASN A 247 REMARK 465 ASN A 248 REMARK 465 TYR A 249 REMARK 465 GLY A 250 REMARK 465 LEU A 251 REMARK 465 PRO A 252 REMARK 465 ILE A 253 REMARK 465 PRO A 254 REMARK 465 THR A 255 REMARK 465 ALA A 256 REMARK 465 THR A 257 REMARK 465 GLY A 258 REMARK 465 GLY A 259 REMARK 465 ALA A 260 REMARK 465 THR A 261 REMARK 465 GLN A 262 REMARK 465 SER A 263 REMARK 465 GLY A 264 REMARK 465 TYR A 265 REMARK 465 LEU A 266 REMARK 465 SER A 298 REMARK 465 GLN A 299 REMARK 465 PHE A 300 REMARK 465 GLN A 301 REMARK 465 GLN A 302 REMARK 465 LEU A 303 REMARK 465 LYS A 304 REMARK 465 ALA A 305 REMARK 465 THR A 306 REMARK 465 SER A 307 REMARK 465 THR A 308 REMARK 465 SER A 309 REMARK 465 GLY A 310 REMARK 465 ASP A 311 REMARK 465 THR A 312 REMARK 465 LEU A 313 REMARK 465 PHE A 314 REMARK 465 GLN A 315 REMARK 465 LYS A 316 REMARK 465 HIS A 317 REMARK 465 GLU A 318 REMARK 465 GLY A 319 REMARK 465 PHE A 320 REMARK 465 HIS A 421 REMARK 465 HIS A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 HIS A 426 REMARK 465 ALA B 1 REMARK 465 GLY B 2 REMARK 465 ASN B 237 REMARK 465 TYR B 238 REMARK 465 SER B 239 REMARK 465 SER B 240 REMARK 465 ASP B 241 REMARK 465 LEU B 242 REMARK 465 ASN B 243 REMARK 465 ARG B 244 REMARK 465 ALA B 245 REMARK 465 PHE B 246 REMARK 465 ASN B 247 REMARK 465 ASN B 248 REMARK 465 TYR B 249 REMARK 465 GLY B 250 REMARK 465 LEU B 251 REMARK 465 PRO B 252 REMARK 465 ILE B 253 REMARK 465 PRO B 254 REMARK 465 THR B 255 REMARK 465 ALA B 256 REMARK 465 THR B 257 REMARK 465 GLY B 258 REMARK 465 GLY B 259 REMARK 465 ALA B 260 REMARK 465 THR B 261 REMARK 465 GLN B 262 REMARK 465 SER B 263 REMARK 465 GLY B 264 REMARK 465 TYR B 265 REMARK 465 LEU B 266 REMARK 465 SER B 298 REMARK 465 GLN B 299 REMARK 465 PHE B 300 REMARK 465 GLN B 301 REMARK 465 GLN B 302 REMARK 465 LEU B 303 REMARK 465 LYS B 304 REMARK 465 ALA B 305 REMARK 465 THR B 306 REMARK 465 SER B 307 REMARK 465 THR B 308 REMARK 465 SER B 309 REMARK 465 GLY B 310 REMARK 465 ASP B 311 REMARK 465 THR B 312 REMARK 465 LEU B 313 REMARK 465 PHE B 314 REMARK 465 GLN B 315 REMARK 465 LYS B 316 REMARK 465 HIS B 317 REMARK 465 GLU B 318 REMARK 465 GLY B 319 REMARK 465 PHE B 320 REMARK 465 HIS B 421 REMARK 465 HIS B 422 REMARK 465 HIS B 423 REMARK 465 HIS B 424 REMARK 465 HIS B 425 REMARK 465 HIS B 426 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 3 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 4 CB CG CD OE1 NE2 REMARK 470 LEU A 5 CB CG CD1 CD2 REMARK 470 PHE B 3 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 4 CB CG CD OE1 NE2 REMARK 470 LEU B 5 CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN B 4 N - CA - C ANGL. DEV. = 20.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 36 -9.08 -59.68 REMARK 500 THR A 38 2.89 -69.20 REMARK 500 ASN A 136 -141.55 -165.00 REMARK 500 GLN A 176 36.17 -149.05 REMARK 500 ASP A 217 -157.28 -157.64 REMARK 500 LYS A 231 -89.79 -58.31 REMARK 500 PHE A 234 -171.59 -55.31 REMARK 500 LYS A 235 86.06 -179.28 REMARK 500 ASP A 322 -169.31 -101.14 REMARK 500 ALA A 323 146.00 164.24 REMARK 500 PRO A 352 -154.77 -52.51 REMARK 500 PRO A 361 108.93 -53.23 REMARK 500 ASP A 362 108.13 -167.38 REMARK 500 ASN A 377 -118.09 -156.23 REMARK 500 ALA B 24 59.69 -146.08 REMARK 500 THR B 38 2.69 -68.96 REMARK 500 ASN B 136 -142.05 -165.50 REMARK 500 GLN B 176 36.23 -148.99 REMARK 500 ASP B 217 -157.36 -158.09 REMARK 500 LYS B 231 -89.66 -58.35 REMARK 500 PHE B 234 -171.68 -55.30 REMARK 500 LYS B 235 86.19 -179.10 REMARK 500 ASP B 322 -169.23 -101.05 REMARK 500 ALA B 323 145.86 164.06 REMARK 500 PRO B 352 -154.86 -52.49 REMARK 500 PRO B 361 108.82 -53.19 REMARK 500 ASP B 362 108.24 -167.21 REMARK 500 ASN B 377 -118.06 -156.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T16 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BACTERIAL FATTY ACID TRANSPORTER FADL REMARK 900 (WILD-TYPE, MONOCLINIC SPACE GROUP P21) REMARK 900 RELATED ID: 1T1L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BACTERIAL FATTY ACID TRANSPORTER FADL REMARK 900 (WILD-TYPE, HEXAGONAL SPACE GROUP P3121) REMARK 900 RELATED ID: 2R4L RELATED DB: PDB REMARK 900 FADL MUTANT P34A REMARK 900 RELATED ID: 2R4M RELATED DB: PDB REMARK 900 FADL MUTANT A77E/S100R REMARK 900 RELATED ID: 2R4N RELATED DB: PDB REMARK 900 FADL MUTANT N33A REMARK 900 RELATED ID: 2R4O RELATED DB: PDB REMARK 900 FADL MUTANT DELTA NPA REMARK 900 RELATED ID: 2R4P RELATED DB: PDB REMARK 900 FADL MUTANT G212E REMARK 900 RELATED ID: 2R89 RELATED DB: PDB REMARK 900 FADL MUTANT DELTA N3 REMARK 900 RELATED ID: 2R8A RELATED DB: PDB REMARK 900 FADL MUTANT DELTA N8 REMARK 900 RELATED ID: 3DWO RELATED DB: PDB REMARK 900 FADL HOMOLOGUE IN PSEUDOMONAS AERUGINOSA REMARK 900 RELATED ID: 3DWN RELATED DB: PDB REMARK 900 FADL MUTANT A77E/S100R REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE REMARK 999 RESIDUES S100, N101, Y102, AND G103 WERE REPLACED REMARK 999 WITH RESIDUES ALA, ASN, AND ASP TO FORM THE DELTA S3 KINK. DBREF 2R88 A 1 420 UNP P10384 FADL_ECOLI 26 446 DBREF 2R88 B 1 420 UNP P10384 FADL_ECOLI 26 446 SEQADV 2R88 A UNP P10384 SER 125 SEE REMARK 999 SEQADV 2R88 ALA A 100 UNP P10384 ASN 126 SEE REMARK 999 SEQADV 2R88 ASN A 101 UNP P10384 TYR 127 SEE REMARK 999 SEQADV 2R88 ASP A 102 UNP P10384 GLY 128 SEE REMARK 999 SEQADV 2R88 THR A 196 UNP P10384 ILE 222 CONFLICT SEQADV 2R88 HIS A 421 UNP P10384 EXPRESSION TAG SEQADV 2R88 HIS A 422 UNP P10384 EXPRESSION TAG SEQADV 2R88 HIS A 423 UNP P10384 EXPRESSION TAG SEQADV 2R88 HIS A 424 UNP P10384 EXPRESSION TAG SEQADV 2R88 HIS A 425 UNP P10384 EXPRESSION TAG SEQADV 2R88 HIS A 426 UNP P10384 EXPRESSION TAG SEQADV 2R88 B UNP P10384 SER 125 SEE REMARK 999 SEQADV 2R88 ALA B 100 UNP P10384 ASN 126 SEE REMARK 999 SEQADV 2R88 ASN B 101 UNP P10384 TYR 127 SEE REMARK 999 SEQADV 2R88 ASP B 102 UNP P10384 GLY 128 SEE REMARK 999 SEQADV 2R88 THR B 196 UNP P10384 ILE 222 CONFLICT SEQADV 2R88 HIS B 421 UNP P10384 EXPRESSION TAG SEQADV 2R88 HIS B 422 UNP P10384 EXPRESSION TAG SEQADV 2R88 HIS B 423 UNP P10384 EXPRESSION TAG SEQADV 2R88 HIS B 424 UNP P10384 EXPRESSION TAG SEQADV 2R88 HIS B 425 UNP P10384 EXPRESSION TAG SEQADV 2R88 HIS B 426 UNP P10384 EXPRESSION TAG SEQRES 1 A 426 ALA GLY PHE GLN LEU ASN GLU PHE SER SER SER GLY LEU SEQRES 2 A 426 GLY ARG ALA TYR SER GLY GLU GLY ALA ILE ALA ASP ASP SEQRES 3 A 426 ALA GLY ASN VAL SER ARG ASN PRO ALA LEU ILE THR MET SEQRES 4 A 426 PHE ASP ARG PRO THR PHE SER ALA GLY ALA VAL TYR ILE SEQRES 5 A 426 ASP PRO ASP VAL ASN ILE SER GLY THR SER PRO SER GLY SEQRES 6 A 426 ARG SER LEU LYS ALA ASP ASN ILE ALA PRO THR ALA TRP SEQRES 7 A 426 VAL PRO ASN MET HIS PHE VAL ALA PRO ILE ASN ASP GLN SEQRES 8 A 426 PHE GLY TRP GLY ALA SER ILE THR ALA ASN ASP LEU ALA SEQRES 9 A 426 THR GLU PHE ASN ASP THR TYR ALA GLY GLY SER VAL GLY SEQRES 10 A 426 GLY THR THR ASP LEU GLU THR MET ASN LEU ASN LEU SER SEQRES 11 A 426 GLY ALA TYR ARG LEU ASN ASN ALA TRP SER PHE GLY LEU SEQRES 12 A 426 GLY PHE ASN ALA VAL TYR ALA ARG ALA LYS ILE GLU ARG SEQRES 13 A 426 PHE ALA GLY ASP LEU GLY GLN LEU VAL ALA GLY GLN ILE SEQRES 14 A 426 MET GLN SER PRO ALA GLY GLN THR GLN GLN GLY GLN ALA SEQRES 15 A 426 LEU ALA ALA THR ALA ASN GLY ILE ASP SER ASN THR LYS SEQRES 16 A 426 THR ALA HIS LEU ASN GLY ASN GLN TRP GLY PHE GLY TRP SEQRES 17 A 426 ASN ALA GLY ILE LEU TYR GLU LEU ASP LYS ASN ASN ARG SEQRES 18 A 426 TYR ALA LEU THR TYR ARG SER GLU VAL LYS ILE ASP PHE SEQRES 19 A 426 LYS GLY ASN TYR SER SER ASP LEU ASN ARG ALA PHE ASN SEQRES 20 A 426 ASN TYR GLY LEU PRO ILE PRO THR ALA THR GLY GLY ALA SEQRES 21 A 426 THR GLN SER GLY TYR LEU THR LEU ASN LEU PRO GLU MET SEQRES 22 A 426 TRP GLU VAL SER GLY TYR ASN ARG VAL ASP PRO GLN TRP SEQRES 23 A 426 ALA ILE HIS TYR SER LEU ALA TYR THR SER TRP SER GLN SEQRES 24 A 426 PHE GLN GLN LEU LYS ALA THR SER THR SER GLY ASP THR SEQRES 25 A 426 LEU PHE GLN LYS HIS GLU GLY PHE LYS ASP ALA TYR ARG SEQRES 26 A 426 ILE ALA LEU GLY THR THR TYR TYR TYR ASP ASP ASN TRP SEQRES 27 A 426 THR PHE ARG THR GLY ILE ALA PHE ASP ASP SER PRO VAL SEQRES 28 A 426 PRO ALA GLN ASN ARG SER ILE SER ILE PRO ASP GLN ASP SEQRES 29 A 426 ARG PHE TRP LEU SER ALA GLY THR THR TYR ALA PHE ASN SEQRES 30 A 426 LYS ASP ALA SER VAL ASP VAL GLY VAL SER TYR MET HIS SEQRES 31 A 426 GLY GLN SER VAL LYS ILE ASN GLU GLY PRO TYR GLN PHE SEQRES 32 A 426 GLU SER GLU GLY LYS ALA TRP LEU PHE GLY THR ASN PHE SEQRES 33 A 426 ASN TYR ALA PHE HIS HIS HIS HIS HIS HIS SEQRES 1 B 426 ALA GLY PHE GLN LEU ASN GLU PHE SER SER SER GLY LEU SEQRES 2 B 426 GLY ARG ALA TYR SER GLY GLU GLY ALA ILE ALA ASP ASP SEQRES 3 B 426 ALA GLY ASN VAL SER ARG ASN PRO ALA LEU ILE THR MET SEQRES 4 B 426 PHE ASP ARG PRO THR PHE SER ALA GLY ALA VAL TYR ILE SEQRES 5 B 426 ASP PRO ASP VAL ASN ILE SER GLY THR SER PRO SER GLY SEQRES 6 B 426 ARG SER LEU LYS ALA ASP ASN ILE ALA PRO THR ALA TRP SEQRES 7 B 426 VAL PRO ASN MET HIS PHE VAL ALA PRO ILE ASN ASP GLN SEQRES 8 B 426 PHE GLY TRP GLY ALA SER ILE THR ALA ASN ASP LEU ALA SEQRES 9 B 426 THR GLU PHE ASN ASP THR TYR ALA GLY GLY SER VAL GLY SEQRES 10 B 426 GLY THR THR ASP LEU GLU THR MET ASN LEU ASN LEU SER SEQRES 11 B 426 GLY ALA TYR ARG LEU ASN ASN ALA TRP SER PHE GLY LEU SEQRES 12 B 426 GLY PHE ASN ALA VAL TYR ALA ARG ALA LYS ILE GLU ARG SEQRES 13 B 426 PHE ALA GLY ASP LEU GLY GLN LEU VAL ALA GLY GLN ILE SEQRES 14 B 426 MET GLN SER PRO ALA GLY GLN THR GLN GLN GLY GLN ALA SEQRES 15 B 426 LEU ALA ALA THR ALA ASN GLY ILE ASP SER ASN THR LYS SEQRES 16 B 426 THR ALA HIS LEU ASN GLY ASN GLN TRP GLY PHE GLY TRP SEQRES 17 B 426 ASN ALA GLY ILE LEU TYR GLU LEU ASP LYS ASN ASN ARG SEQRES 18 B 426 TYR ALA LEU THR TYR ARG SER GLU VAL LYS ILE ASP PHE SEQRES 19 B 426 LYS GLY ASN TYR SER SER ASP LEU ASN ARG ALA PHE ASN SEQRES 20 B 426 ASN TYR GLY LEU PRO ILE PRO THR ALA THR GLY GLY ALA SEQRES 21 B 426 THR GLN SER GLY TYR LEU THR LEU ASN LEU PRO GLU MET SEQRES 22 B 426 TRP GLU VAL SER GLY TYR ASN ARG VAL ASP PRO GLN TRP SEQRES 23 B 426 ALA ILE HIS TYR SER LEU ALA TYR THR SER TRP SER GLN SEQRES 24 B 426 PHE GLN GLN LEU LYS ALA THR SER THR SER GLY ASP THR SEQRES 25 B 426 LEU PHE GLN LYS HIS GLU GLY PHE LYS ASP ALA TYR ARG SEQRES 26 B 426 ILE ALA LEU GLY THR THR TYR TYR TYR ASP ASP ASN TRP SEQRES 27 B 426 THR PHE ARG THR GLY ILE ALA PHE ASP ASP SER PRO VAL SEQRES 28 B 426 PRO ALA GLN ASN ARG SER ILE SER ILE PRO ASP GLN ASP SEQRES 29 B 426 ARG PHE TRP LEU SER ALA GLY THR THR TYR ALA PHE ASN SEQRES 30 B 426 LYS ASP ALA SER VAL ASP VAL GLY VAL SER TYR MET HIS SEQRES 31 B 426 GLY GLN SER VAL LYS ILE ASN GLU GLY PRO TYR GLN PHE SEQRES 32 B 426 GLU SER GLU GLY LYS ALA TRP LEU PHE GLY THR ASN PHE SEQRES 33 B 426 ASN TYR ALA PHE HIS HIS HIS HIS HIS HIS HELIX 1 1 SER A 9 GLY A 14 1 6 HELIX 2 2 ASP A 26 ARG A 32 5 7 HELIX 3 3 ASN A 33 PHE A 40 5 8 HELIX 4 4 GLY A 113 GLY A 117 5 5 HELIX 5 5 ASP A 160 GLN A 171 1 12 HELIX 6 6 GLN A 179 GLY A 189 1 11 HELIX 7 7 SER B 9 GLY B 14 1 6 HELIX 8 8 ASP B 26 ARG B 32 5 7 HELIX 9 9 ASN B 33 PHE B 40 5 8 HELIX 10 10 GLY B 113 GLY B 117 5 5 HELIX 11 11 ASP B 160 GLN B 171 1 12 HELIX 12 12 GLN B 179 GLY B 189 1 11 SHEET 1 A16 VAL A 394 ILE A 396 0 SHEET 2 A16 PHE A 403 ALA A 419 -1 O SER A 405 N VAL A 394 SHEET 3 A16 ALA A 380 GLY A 391 -1 N GLY A 391 O GLY A 407 SHEET 4 A16 ARG A 365 ALA A 375 -1 N ALA A 370 O VAL A 386 SHEET 5 A16 TRP A 338 ASP A 348 -1 N ARG A 341 O GLY A 371 SHEET 6 A16 TYR A 324 TYR A 332 -1 N TYR A 332 O PHE A 340 SHEET 7 A16 TRP A 286 SER A 296 -1 N ALA A 293 O ARG A 325 SHEET 8 A16 GLU A 272 ASN A 280 -1 N ASN A 280 O ILE A 288 SHEET 9 A16 ASN A 220 ARG A 227 -1 N ARG A 227 O MET A 273 SHEET 10 A16 THR A 194 ASP A 217 -1 N ALA A 210 O TYR A 226 SHEET 11 A16 TRP A 139 ALA A 158 -1 N VAL A 148 O GLY A 205 SHEET 12 A16 THR A 119 ARG A 134 -1 N LEU A 129 O PHE A 145 SHEET 13 A16 PHE A 92 GLU A 106 -1 N THR A 99 O ASN A 126 SHEET 14 A16 ALA A 77 PRO A 87 -1 N ALA A 86 O TRP A 94 SHEET 15 A16 THR A 44 GLY A 60 -1 N SER A 46 O HIS A 83 SHEET 16 A16 PHE A 403 ALA A 419 -1 O PHE A 412 N TYR A 51 SHEET 1 B16 VAL B 394 ILE B 396 0 SHEET 2 B16 PHE B 403 ALA B 419 -1 O SER B 405 N VAL B 394 SHEET 3 B16 ALA B 380 GLY B 391 -1 N GLY B 391 O GLY B 407 SHEET 4 B16 ARG B 365 ALA B 375 -1 N ALA B 370 O VAL B 386 SHEET 5 B16 TRP B 338 ASP B 348 -1 N ARG B 341 O GLY B 371 SHEET 6 B16 TYR B 324 TYR B 332 -1 N TYR B 332 O PHE B 340 SHEET 7 B16 TRP B 286 SER B 296 -1 N ALA B 293 O ARG B 325 SHEET 8 B16 GLU B 272 ASN B 280 -1 N ASN B 280 O ILE B 288 SHEET 9 B16 ASN B 220 ARG B 227 -1 N ALA B 223 O SER B 277 SHEET 10 B16 THR B 194 GLU B 215 -1 N ALA B 210 O TYR B 226 SHEET 11 B16 TRP B 139 ALA B 158 -1 N VAL B 148 O GLY B 205 SHEET 12 B16 THR B 119 ARG B 134 -1 N LEU B 129 O PHE B 145 SHEET 13 B16 PHE B 92 GLU B 106 -1 N THR B 99 O ASN B 126 SHEET 14 B16 ALA B 77 PRO B 87 -1 N ALA B 86 O TRP B 94 SHEET 15 B16 THR B 44 GLY B 60 -1 N SER B 46 O HIS B 83 SHEET 16 B16 PHE B 403 ALA B 419 -1 O PHE B 412 N TYR B 51 CRYST1 91.327 91.370 267.317 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010950 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010945 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003741 0.00000