HEADER LYASE 11-SEP-07 2R8W TITLE THE CRYSTAL STRUCTURE OF DIHYDRODIPICOLINATE SYNTHASE (ATU0899) FROM TITLE 2 AGROBACTERIUM TUMEFACIENS STR. C58 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGR_C_1641P; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR.; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58; SOURCE 5 ATCC: 33970; SOURCE 6 GENE: AGR_C_1641; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET DERIVATIVE KEYWDS APC7498, DIHYDRODIPICOLINATE SYNTHASE, AGROBACTERIUM TUMEFACIENS STR. KEYWDS 2 C58, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,A.DONG,X.XU,J.GU,H.ZHENG,A.M.EDWARDS,A.SAVCHENKO,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 6 13-JUL-11 2R8W 1 VERSN REVDAT 5 17-MAR-09 2R8W 1 JRNL REVDAT 4 24-FEB-09 2R8W 1 VERSN REVDAT 3 10-JUN-08 2R8W 1 JRNL REVDAT 2 20-NOV-07 2R8W 1 JRNL REVDAT 1 25-SEP-07 2R8W 0 JRNL AUTH K.TAN,A.DONG,X.XU,J.GU,H.ZHENG,A.M.EDWARDS,A.SAVCHENKO, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF DIHYDRODIPICOLINATE SYNTHASE JRNL TITL 2 (ATU0899) FROM AGROBACTERIUM TUMEFACIENS STR. C58. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 48753 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.500 REMARK 3 FREE R VALUE TEST SET COUNT : 758 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3588 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4504 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.145 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4718 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6456 ; 1.273 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 628 ; 5.719 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 197 ;32.197 ;22.893 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 746 ;12.365 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;20.176 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 754 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3625 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2507 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3344 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 485 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 64 ; 0.165 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 40 ; 0.147 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3134 ; 0.685 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4875 ; 1.031 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1797 ; 1.946 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1569 ; 2.888 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2R8W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-07. REMARK 100 THE RCSB ID CODE IS RCSB044571. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49541 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 43.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 14.500 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 0.53400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE, DM, HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 8.5, 0.2M NA(OAC), REMARK 280 30% PEG 4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.37333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.74667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.37333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.74667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT IS EXPERIMENTALLY REMARK 300 UNKNOWN. FROM MOLECULAR PACKING, IT IS LIKELY A DIMER FORMED FROM REMARK 300 CHAINS A AND B THAT ARE PRESENT IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3150 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 ARG A 14 REMARK 465 GLU A 15 REMARK 465 ASN A 16 REMARK 465 LEU A 17 REMARK 465 TYR A 18 REMARK 465 PHE A 19 REMARK 465 GLN A 20 REMARK 465 GLY A 21 REMARK 465 MSE A 22 REMARK 465 PRO A 23 REMARK 465 ILE A 24 REMARK 465 LYS A 25 REMARK 465 ALA A 26 REMARK 465 ARG A 27 REMARK 465 GLU A 28 REMARK 465 THR A 29 REMARK 465 ALA A 327 REMARK 465 LEU A 328 REMARK 465 GLU A 329 REMARK 465 THR A 330 REMARK 465 ALA A 331 REMARK 465 PRO A 332 REMARK 465 MSE B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 GLY B 13 REMARK 465 ARG B 14 REMARK 465 GLU B 15 REMARK 465 ASN B 16 REMARK 465 LEU B 17 REMARK 465 TYR B 18 REMARK 465 PHE B 19 REMARK 465 GLN B 20 REMARK 465 GLY B 21 REMARK 465 MSE B 22 REMARK 465 PRO B 23 REMARK 465 ILE B 24 REMARK 465 LYS B 25 REMARK 465 ALA B 26 REMARK 465 ARG B 27 REMARK 465 ALA B 327 REMARK 465 LEU B 328 REMARK 465 GLU B 329 REMARK 465 THR B 330 REMARK 465 ALA B 331 REMARK 465 PRO B 332 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 87 NH1 ARG A 90 2.11 REMARK 500 NH2 ARG A 90 OE2 GLU A 94 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 140 -75.81 -123.98 REMARK 500 ALA A 201 21.51 49.68 REMARK 500 TYR B 140 -77.98 -118.16 REMARK 500 ARG B 173 27.61 49.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ILE B 110 24.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 335 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC7498 RELATED DB: TARGETDB DBREF 2R8W A 22 332 UNP Q7D0E8 Q7D0E8_AGRT5 1 311 DBREF 2R8W B 22 332 UNP Q7D0E8 Q7D0E8_AGRT5 1 311 SEQADV 2R8W MSE A 1 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W GLY A 2 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W SER A 3 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W SER A 4 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W HIS A 5 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W HIS A 6 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W HIS A 7 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W HIS A 8 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W HIS A 9 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W HIS A 10 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W SER A 11 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W SER A 12 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W GLY A 13 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W ARG A 14 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W GLU A 15 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W ASN A 16 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W LEU A 17 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W TYR A 18 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W PHE A 19 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W GLN A 20 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W GLY A 21 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W MSE B 1 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W GLY B 2 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W SER B 3 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W SER B 4 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W HIS B 5 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W HIS B 6 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W HIS B 7 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W HIS B 8 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W HIS B 9 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W HIS B 10 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W SER B 11 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W SER B 12 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W GLY B 13 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W ARG B 14 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W GLU B 15 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W ASN B 16 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W LEU B 17 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W TYR B 18 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W PHE B 19 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W GLN B 20 UNP Q7D0E8 EXPRESSION TAG SEQADV 2R8W GLY B 21 UNP Q7D0E8 EXPRESSION TAG SEQRES 1 A 332 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 332 ARG GLU ASN LEU TYR PHE GLN GLY MSE PRO ILE LYS ALA SEQRES 3 A 332 ARG GLU THR ASP MSE ALA THR ARG PHE LYS GLY LEU SER SEQRES 4 A 332 ALA PHE PRO ILE THR PRO ALA ASP GLU ALA GLY ARG VAL SEQRES 5 A 332 ASP ILE GLU ALA PHE SER ALA LEU ILE ALA ARG LEU ASP SEQRES 6 A 332 ALA ALA GLU VAL ASP SER VAL GLY ILE LEU GLY SER THR SEQRES 7 A 332 GLY ILE TYR MSE TYR LEU THR ARG GLU GLU ARG ARG ARG SEQRES 8 A 332 ALA ILE GLU ALA ALA ALA THR ILE LEU ARG GLY ARG ARG SEQRES 9 A 332 THR LEU MSE ALA GLY ILE GLY ALA LEU ARG THR ASP GLU SEQRES 10 A 332 ALA VAL ALA LEU ALA LYS ASP ALA GLU ALA ALA GLY ALA SEQRES 11 A 332 ASP ALA LEU LEU LEU ALA PRO VAL SER TYR THR PRO LEU SEQRES 12 A 332 THR GLN GLU GLU ALA TYR HIS HIS PHE ALA ALA VAL ALA SEQRES 13 A 332 GLY ALA THR ALA LEU PRO LEU ALA ILE TYR ASN ASN PRO SEQRES 14 A 332 THR THR THR ARG PHE THR PHE SER ASP GLU LEU LEU VAL SEQRES 15 A 332 ARG LEU ALA TYR ILE PRO ASN ILE ARG ALA ILE LYS MSE SEQRES 16 A 332 PRO LEU PRO ALA ASP ALA ASP TYR ALA GLY GLU LEU ALA SEQRES 17 A 332 ARG LEU ARG PRO LYS LEU SER ASP ASP PHE ALA ILE GLY SEQRES 18 A 332 TYR SER GLY ASP TRP GLY CYS THR ASP ALA THR LEU ALA SEQRES 19 A 332 GLY GLY ASP THR TRP TYR SER VAL VAL ALA GLY LEU LEU SEQRES 20 A 332 PRO VAL PRO ALA LEU GLN LEU MSE ARG ALA ALA GLN ALA SEQRES 21 A 332 GLY ASN ALA GLU GLU ALA LYS ARG LEU ASP ALA THR PHE SEQRES 22 A 332 GLN PRO LEU TRP ALA LEU PHE LYS GLU PHE GLY SER ILE SEQRES 23 A 332 ARG VAL ILE TYR ALA ALA ALA ASN ILE LEU SER LEU THR SEQRES 24 A 332 VAL SER GLU PRO PRO ARG PRO ILE LEU PRO LEU THR SER SEQRES 25 A 332 ALA GLU ARG GLN ARG VAL GLU GLU ALA LEU GLU ALA LEU SEQRES 26 A 332 SER ALA LEU GLU THR ALA PRO SEQRES 1 B 332 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 332 ARG GLU ASN LEU TYR PHE GLN GLY MSE PRO ILE LYS ALA SEQRES 3 B 332 ARG GLU THR ASP MSE ALA THR ARG PHE LYS GLY LEU SER SEQRES 4 B 332 ALA PHE PRO ILE THR PRO ALA ASP GLU ALA GLY ARG VAL SEQRES 5 B 332 ASP ILE GLU ALA PHE SER ALA LEU ILE ALA ARG LEU ASP SEQRES 6 B 332 ALA ALA GLU VAL ASP SER VAL GLY ILE LEU GLY SER THR SEQRES 7 B 332 GLY ILE TYR MSE TYR LEU THR ARG GLU GLU ARG ARG ARG SEQRES 8 B 332 ALA ILE GLU ALA ALA ALA THR ILE LEU ARG GLY ARG ARG SEQRES 9 B 332 THR LEU MSE ALA GLY ILE GLY ALA LEU ARG THR ASP GLU SEQRES 10 B 332 ALA VAL ALA LEU ALA LYS ASP ALA GLU ALA ALA GLY ALA SEQRES 11 B 332 ASP ALA LEU LEU LEU ALA PRO VAL SER TYR THR PRO LEU SEQRES 12 B 332 THR GLN GLU GLU ALA TYR HIS HIS PHE ALA ALA VAL ALA SEQRES 13 B 332 GLY ALA THR ALA LEU PRO LEU ALA ILE TYR ASN ASN PRO SEQRES 14 B 332 THR THR THR ARG PHE THR PHE SER ASP GLU LEU LEU VAL SEQRES 15 B 332 ARG LEU ALA TYR ILE PRO ASN ILE ARG ALA ILE LYS MSE SEQRES 16 B 332 PRO LEU PRO ALA ASP ALA ASP TYR ALA GLY GLU LEU ALA SEQRES 17 B 332 ARG LEU ARG PRO LYS LEU SER ASP ASP PHE ALA ILE GLY SEQRES 18 B 332 TYR SER GLY ASP TRP GLY CYS THR ASP ALA THR LEU ALA SEQRES 19 B 332 GLY GLY ASP THR TRP TYR SER VAL VAL ALA GLY LEU LEU SEQRES 20 B 332 PRO VAL PRO ALA LEU GLN LEU MSE ARG ALA ALA GLN ALA SEQRES 21 B 332 GLY ASN ALA GLU GLU ALA LYS ARG LEU ASP ALA THR PHE SEQRES 22 B 332 GLN PRO LEU TRP ALA LEU PHE LYS GLU PHE GLY SER ILE SEQRES 23 B 332 ARG VAL ILE TYR ALA ALA ALA ASN ILE LEU SER LEU THR SEQRES 24 B 332 VAL SER GLU PRO PRO ARG PRO ILE LEU PRO LEU THR SER SEQRES 25 B 332 ALA GLU ARG GLN ARG VAL GLU GLU ALA LEU GLU ALA LEU SEQRES 26 B 332 SER ALA LEU GLU THR ALA PRO MODRES 2R8W MSE A 31 MET SELENOMETHIONINE MODRES 2R8W MSE A 82 MET SELENOMETHIONINE MODRES 2R8W MSE A 107 MET SELENOMETHIONINE MODRES 2R8W MSE A 195 MET SELENOMETHIONINE MODRES 2R8W MSE A 255 MET SELENOMETHIONINE MODRES 2R8W MSE B 31 MET SELENOMETHIONINE MODRES 2R8W MSE B 82 MET SELENOMETHIONINE MODRES 2R8W MSE B 107 MET SELENOMETHIONINE MODRES 2R8W MSE B 195 MET SELENOMETHIONINE MODRES 2R8W MSE B 255 MET SELENOMETHIONINE HET MSE A 31 8 HET MSE A 82 8 HET MSE A 107 13 HET MSE A 195 8 HET MSE A 255 8 HET MSE B 31 8 HET MSE B 82 8 HET MSE B 107 8 HET MSE B 195 8 HET MSE B 255 8 HET ACT A 333 4 HET ACT B 333 4 HET CL A 334 1 HET CL A 335 1 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 5 CL 2(CL 1-) FORMUL 7 HOH *570(H2 O) HELIX 1 1 ASP A 30 LYS A 36 5 7 HELIX 2 2 ASP A 53 GLU A 68 1 16 HELIX 3 3 ILE A 80 LEU A 84 5 5 HELIX 4 4 THR A 85 ARG A 101 1 17 HELIX 5 5 ARG A 114 GLY A 129 1 16 HELIX 6 6 THR A 144 THR A 159 1 16 HELIX 7 7 ASN A 168 ARG A 173 1 6 HELIX 8 8 SER A 177 TYR A 186 1 10 HELIX 9 9 ASP A 202 ARG A 211 1 10 HELIX 10 10 GLY A 224 ALA A 234 1 11 HELIX 11 11 VAL A 242 LEU A 246 5 5 HELIX 12 12 LEU A 247 ALA A 260 1 14 HELIX 13 13 ASN A 262 PHE A 273 1 12 HELIX 14 14 PHE A 273 GLY A 284 1 12 HELIX 15 15 GLY A 284 LEU A 296 1 13 HELIX 16 16 THR A 311 SER A 326 1 16 HELIX 17 17 ASP B 30 LYS B 36 5 7 HELIX 18 18 ASP B 53 ALA B 67 1 15 HELIX 19 19 ILE B 80 LEU B 84 5 5 HELIX 20 20 THR B 85 ARG B 101 1 17 HELIX 21 21 ARG B 114 GLY B 129 1 16 HELIX 22 22 THR B 144 THR B 159 1 16 HELIX 23 23 ASN B 168 THR B 172 5 5 HELIX 24 24 SER B 177 TYR B 186 1 10 HELIX 25 25 ASP B 202 ARG B 211 1 10 HELIX 26 26 GLY B 224 ALA B 234 1 11 HELIX 27 27 VAL B 242 LEU B 246 5 5 HELIX 28 28 LEU B 247 ALA B 260 1 14 HELIX 29 29 ASN B 262 PHE B 273 1 12 HELIX 30 30 PHE B 273 GLY B 284 1 12 HELIX 31 31 GLY B 284 LEU B 296 1 13 HELIX 32 32 THR B 311 SER B 326 1 16 SHEET 1 A 9 GLY A 37 ALA A 40 0 SHEET 2 A 9 SER A 71 ILE A 74 1 O GLY A 73 N ALA A 40 SHEET 3 A 9 THR A 105 ILE A 110 1 O MSE A 107 N VAL A 72 SHEET 4 A 9 ALA A 132 LEU A 135 1 O LEU A 134 N ILE A 110 SHEET 5 A 9 LEU A 163 TYR A 166 1 O ALA A 164 N LEU A 133 SHEET 6 A 9 ILE A 190 MSE A 195 1 O LYS A 194 N ILE A 165 SHEET 7 A 9 ALA A 219 TYR A 222 1 O GLY A 221 N MSE A 195 SHEET 8 A 9 THR A 238 SER A 241 1 O TYR A 240 N TYR A 222 SHEET 9 A 9 GLY A 37 ALA A 40 1 N SER A 39 O SER A 241 SHEET 1 B 9 GLY B 37 ALA B 40 0 SHEET 2 B 9 SER B 71 ILE B 74 1 O GLY B 73 N ALA B 40 SHEET 3 B 9 THR B 105 GLY B 109 1 O MSE B 107 N VAL B 72 SHEET 4 B 9 ALA B 132 LEU B 135 1 O LEU B 134 N ALA B 108 SHEET 5 B 9 LEU B 163 TYR B 166 1 O TYR B 166 N LEU B 135 SHEET 6 B 9 ILE B 190 MSE B 195 1 O LYS B 194 N ILE B 165 SHEET 7 B 9 ALA B 219 TYR B 222 1 O GLY B 221 N MSE B 195 SHEET 8 B 9 THR B 238 SER B 241 1 O TYR B 240 N TYR B 222 SHEET 9 B 9 GLY B 37 ALA B 40 1 N SER B 39 O SER B 241 LINK C ASP A 30 N MSE A 31 1555 1555 1.33 LINK C MSE A 31 N ALA A 32 1555 1555 1.34 LINK C TYR A 81 N MSE A 82 1555 1555 1.33 LINK C MSE A 82 N TYR A 83 1555 1555 1.33 LINK C LEU A 106 N MSE A 107 1555 1555 1.34 LINK CE BMSE A 107 CD2BLEU A 134 1555 1555 1.96 LINK C MSE A 107 N ALA A 108 1555 1555 1.33 LINK C LYS A 194 N MSE A 195 1555 1555 1.33 LINK C MSE A 195 N PRO A 196 1555 1555 1.35 LINK C LEU A 254 N MSE A 255 1555 1555 1.33 LINK C MSE A 255 N ARG A 256 1555 1555 1.33 LINK C ASP B 30 N MSE B 31 1555 1555 1.33 LINK C MSE B 31 N ALA B 32 1555 1555 1.34 LINK C TYR B 81 N MSE B 82 1555 1555 1.33 LINK C MSE B 82 N TYR B 83 1555 1555 1.34 LINK C LEU B 106 N MSE B 107 1555 1555 1.33 LINK C MSE B 107 N ALA B 108 1555 1555 1.33 LINK C LYS B 194 N MSE B 195 1555 1555 1.33 LINK C MSE B 195 N PRO B 196 1555 1555 1.35 LINK C LEU B 254 N MSE B 255 1555 1555 1.33 LINK C MSE B 255 N ARG B 256 1555 1555 1.33 CISPEP 1 ARG A 305 PRO A 306 0 17.14 CISPEP 2 ARG B 305 PRO B 306 0 17.14 SITE 1 AC1 5 PHE A 41 GLY A 76 SER A 77 THR A 78 SITE 2 AC1 5 TYR A 166 SITE 1 AC2 5 PHE B 41 SER B 77 THR B 78 TYR B 166 SITE 2 AC2 5 VAL B 242 SITE 1 AC3 5 ARG A 101 LEU B 247 PRO B 248 VAL B 249 SITE 2 AC3 5 HOH B 524 SITE 1 AC4 4 ALA A 263 GLU A 264 HOH A 433 LYS B 213 CRYST1 95.994 95.994 103.120 90.00 90.00 120.00 P 64 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010417 0.006014 0.000000 0.00000 SCALE2 0.000000 0.012029 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009697 0.00000