HEADER OXIDOREDUCTASE, ELECTRON TRANSPORT 12-SEP-07 2R96 TITLE CRYSTAL STRUCTURE OF E. COLI WRBA IN COMPLEX WITH FMN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVOPROTEIN WRBA; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: TRP REPRESSOR-BINDING PROTEIN A; COMPND 5 EC: 1.6.5.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 STRAIN: K-12/JM101; SOURCE 4 GENE: WRBA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: CY15071(LAMBDA-DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PKGWA; SOURCE 9 OTHER_DETAILS: GENOMIC SEQUENCE CLONED IN PET3A KEYWDS ELECTRON TRANSPORT, QUINONE OXIDOREDUCTASE, FLAVOPROTEIN, FLAVODOXIN- KEYWDS 2 LIKE FOLD, FMN-BINDING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR I.KUTA SMATANOVA,J.WOLFOVA,J.BRYNDA,J.R.MESTERS,R.GRANDORI,J.CAREY REVDAT 5 30-AUG-23 2R96 1 REMARK REVDAT 4 25-OCT-17 2R96 1 REMARK REVDAT 3 29-SEP-09 2R96 1 JRNL REVDAT 2 24-FEB-09 2R96 1 VERSN REVDAT 1 23-SEP-08 2R96 0 JRNL AUTH J.WOLFOVA,I.K.SMATANOVA,J.BRYNDA,J.R.MESTERS,M.LAPKOUSKI, JRNL AUTH 2 M.KUTY,A.NATALELLO,N.CHATTERJEE,S.Y.CHERN,E.EBBEL,A.RICCI, JRNL AUTH 3 R.GRANDORI,R.ETTRICH,J.CAREY JRNL TITL STRUCTURAL ORGANIZATION OF WRBA IN APO- AND HOLOPROTEIN JRNL TITL 2 CRYSTALS. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1794 1288 2009 JRNL REFN ISSN 0006-3002 JRNL PMID 19665595 JRNL DOI 10.1016/J.BBAPAP.2009.08.001 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.CAREY,J.BRYNDA,J.WOLFOVA,R.GRANDORI,T.GUSTAVSSON, REMARK 1 AUTH 2 R.ETTRICH,I.KUTA SMATANOVA REMARK 1 TITL WRBA BRIDGES BACTERIAL FLAVODOXINS AND EUKARYOTIC REMARK 1 TITL 2 NAD(P)H:QUINONE OXIDOREDUCTASES REMARK 1 REF PROTEIN SCI. V. 16 1 2007 REMARK 1 REFN ISSN 0961-8368 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.WOLFOVA,J.R.MESTERS,J.BRYNDA,R.GRANDORI,A.NATALELLO, REMARK 1 AUTH 2 J.CAREY,I.KUTA SMATANOVA REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY DIFFRACTION ANALYSIS OF REMARK 1 TITL 2 ESCHERICHIA COLI WRBA IN COMPLEX WITH ITS COFACTOR FLAVIN REMARK 1 TITL 3 MONONUCLEOTIDE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 63 571 2007 REMARK 1 REFN ESSN 1744-3091 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 24934 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1282 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1708 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2904 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 118 REMARK 3 SOLVENT ATOMS : 101 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.280 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.228 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3072 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4156 ; 1.808 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 392 ;13.488 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;37.757 ;24.035 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 452 ;18.173 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.187 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 458 ; 0.176 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2292 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1581 ; 0.236 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2095 ; 0.319 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 159 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 72 ; 0.223 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.117 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1934 ; 0.509 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3081 ; 0.972 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1138 ; 1.463 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1075 ; 2.483 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 197 4 REMARK 3 1 C 1 C 197 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1446 ; 0.220 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1446 ; 0.670 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 198 4 REMARK 3 1 C 1 C 198 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 C (A): 31 ; 0.090 ; 0.500 REMARK 3 MEDIUM THERMAL 2 C (A**2): 31 ; 0.470 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2R96 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044581. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8100 REMARK 200 MONOCHROMATOR : SI (111), HORIZONTALLY FOCUSSING REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24986 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1ZWL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% ETHYLENE GLYCOL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 285K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.69000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.17500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.17500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 131.53500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.17500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.17500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.84500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.17500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.17500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 131.53500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.17500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.17500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.84500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 87.69000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: -Y, -X, 1/2-Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 87.69000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET C 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 45 CG CD OE1 NE2 REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 LYS A 49 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU C 48 N - CA - C ANGL. DEV. = -26.7 DEGREES REMARK 500 GLY C 51 N - CA - C ANGL. DEV. = -15.6 DEGREES REMARK 500 GLY C 114 N - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 115 -31.62 107.14 REMARK 500 ASN A 196 -58.40 -144.72 REMARK 500 PHE C 47 -81.98 20.25 REMARK 500 ALA C 50 -52.24 -163.74 REMARK 500 LYS C 53 122.18 173.71 REMARK 500 THR C 115 -20.58 78.65 REMARK 500 ASN C 196 -46.75 -148.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 50 GLY A 51 -145.72 REMARK 500 THR A 113 GLY A 114 143.01 REMARK 500 LEU A 195 ASN A 196 -94.20 REMARK 500 LEU C 46 PHE C 47 104.34 REMARK 500 PHE C 47 GLU C 48 -117.74 REMARK 500 LYS C 49 ALA C 50 -77.03 REMARK 500 THR C 113 GLY C 114 67.42 REMARK 500 LEU C 195 ASN C 196 -91.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN C 198 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2R97 RELATED DB: PDB REMARK 900 E. COLI WRBA IN COMPLEX WITH OXIDIZED FMN, CRYSTAL FORM GROWN FROM REMARK 900 20% PEG 8000, 0.1M TRIS-HCL, PH 8.0 REMARK 900 RELATED ID: 2RG1 RELATED DB: PDB REMARK 900 E. COLI WRBA APOPROTEIN DBREF 2R96 A 0 197 UNP P0A8G6 WRBA_ECOLI 1 198 DBREF 2R96 C 0 197 UNP P0A8G6 WRBA_ECOLI 1 198 SEQRES 1 A 198 MET ALA LYS VAL LEU VAL LEU TYR TYR SER MET TYR GLY SEQRES 2 A 198 HIS ILE GLU THR MET ALA ARG ALA VAL ALA GLU GLY ALA SEQRES 3 A 198 SER LYS VAL ASP GLY ALA GLU VAL VAL VAL LYS ARG VAL SEQRES 4 A 198 PRO GLU THR MET PRO PRO GLN LEU PHE GLU LYS ALA GLY SEQRES 5 A 198 GLY LYS THR GLN THR ALA PRO VAL ALA THR PRO GLN GLU SEQRES 6 A 198 LEU ALA ASP TYR ASP ALA ILE ILE PHE GLY THR PRO THR SEQRES 7 A 198 ARG PHE GLY ASN MET SER GLY GLN MET ARG THR PHE LEU SEQRES 8 A 198 ASP GLN THR GLY GLY LEU TRP ALA SER GLY ALA LEU TYR SEQRES 9 A 198 GLY LYS LEU ALA SER VAL PHE SER SER THR GLY THR GLY SEQRES 10 A 198 GLY GLY GLN GLU GLN THR ILE THR SER THR TRP THR THR SEQRES 11 A 198 LEU ALA HIS HIS GLY MET VAL ILE VAL PRO ILE GLY TYR SEQRES 12 A 198 ALA ALA GLN GLU LEU PHE ASP VAL SER GLN VAL ARG GLY SEQRES 13 A 198 GLY THR PRO TYR GLY ALA THR THR ILE ALA GLY GLY ASP SEQRES 14 A 198 GLY SER ARG GLN PRO SER GLN GLU GLU LEU SER ILE ALA SEQRES 15 A 198 ARG TYR GLN GLY GLU TYR VAL ALA GLY LEU ALA VAL LYS SEQRES 16 A 198 LEU ASN GLY SEQRES 1 C 198 MET ALA LYS VAL LEU VAL LEU TYR TYR SER MET TYR GLY SEQRES 2 C 198 HIS ILE GLU THR MET ALA ARG ALA VAL ALA GLU GLY ALA SEQRES 3 C 198 SER LYS VAL ASP GLY ALA GLU VAL VAL VAL LYS ARG VAL SEQRES 4 C 198 PRO GLU THR MET PRO PRO GLN LEU PHE GLU LYS ALA GLY SEQRES 5 C 198 GLY LYS THR GLN THR ALA PRO VAL ALA THR PRO GLN GLU SEQRES 6 C 198 LEU ALA ASP TYR ASP ALA ILE ILE PHE GLY THR PRO THR SEQRES 7 C 198 ARG PHE GLY ASN MET SER GLY GLN MET ARG THR PHE LEU SEQRES 8 C 198 ASP GLN THR GLY GLY LEU TRP ALA SER GLY ALA LEU TYR SEQRES 9 C 198 GLY LYS LEU ALA SER VAL PHE SER SER THR GLY THR GLY SEQRES 10 C 198 GLY GLY GLN GLU GLN THR ILE THR SER THR TRP THR THR SEQRES 11 C 198 LEU ALA HIS HIS GLY MET VAL ILE VAL PRO ILE GLY TYR SEQRES 12 C 198 ALA ALA GLN GLU LEU PHE ASP VAL SER GLN VAL ARG GLY SEQRES 13 C 198 GLY THR PRO TYR GLY ALA THR THR ILE ALA GLY GLY ASP SEQRES 14 C 198 GLY SER ARG GLN PRO SER GLN GLU GLU LEU SER ILE ALA SEQRES 15 C 198 ARG TYR GLN GLY GLU TYR VAL ALA GLY LEU ALA VAL LYS SEQRES 16 C 198 LEU ASN GLY HET FMN A 198 31 HET EDO A 199 4 HET EDO A 200 4 HET EDO A 201 4 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 4 HET FMN C 198 31 HET EDO C 199 4 HET EDO C 200 4 HET EDO C 201 4 HET EDO C 202 4 HET EDO C 203 4 HET EDO C 204 4 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 EDO 14(C2 H6 O2) FORMUL 19 HOH *101(H2 O) HELIX 1 1 GLY A 12 SER A 26 1 15 HELIX 2 2 PRO A 43 GLY A 51 1 9 HELIX 3 3 PRO A 62 TYR A 68 5 7 HELIX 4 4 SER A 83 ASP A 91 1 9 HELIX 5 5 THR A 93 GLY A 100 1 8 HELIX 6 6 GLY A 118 HIS A 133 1 16 HELIX 7 7 ALA A 144 ASP A 149 5 6 HELIX 8 8 SER A 174 GLY A 197 1 24 HELIX 9 9 GLY C 12 LYS C 27 1 16 HELIX 10 10 PRO C 43 LYS C 49 1 7 HELIX 11 11 THR C 61 TYR C 68 5 8 HELIX 12 12 SER C 83 ASP C 91 1 9 HELIX 13 13 THR C 93 GLY C 100 1 8 HELIX 14 14 GLY C 118 HIS C 133 1 16 HELIX 15 15 ALA C 144 ASP C 149 5 6 HELIX 16 16 SER C 174 GLY C 197 1 24 SHEET 1 A 5 GLU A 32 ARG A 37 0 SHEET 2 A 5 LYS A 2 TYR A 7 1 N VAL A 3 O GLU A 32 SHEET 3 A 5 ALA A 70 PRO A 76 1 O ILE A 72 N LEU A 4 SHEET 4 A 5 LEU A 106 THR A 113 1 O SER A 108 N PHE A 73 SHEET 5 A 5 VAL A 136 ILE A 137 1 O VAL A 136 N ALA A 107 SHEET 1 B 5 GLU A 32 ARG A 37 0 SHEET 2 B 5 LYS A 2 TYR A 7 1 N VAL A 3 O GLU A 32 SHEET 3 B 5 ALA A 70 PRO A 76 1 O ILE A 72 N LEU A 4 SHEET 4 B 5 LEU A 106 THR A 113 1 O SER A 108 N PHE A 73 SHEET 5 B 5 THR A 162 ILE A 164 1 O THR A 163 N THR A 113 SHEET 1 C 5 GLU C 32 ARG C 37 0 SHEET 2 C 5 LYS C 2 TYR C 7 1 N VAL C 5 O VAL C 34 SHEET 3 C 5 ALA C 70 PRO C 76 1 O ALA C 70 N LEU C 4 SHEET 4 C 5 LEU C 106 THR C 113 1 O SER C 108 N PHE C 73 SHEET 5 C 5 VAL C 136 ILE C 137 1 O VAL C 136 N ALA C 107 SHEET 1 D 5 GLU C 32 ARG C 37 0 SHEET 2 D 5 LYS C 2 TYR C 7 1 N VAL C 5 O VAL C 34 SHEET 3 D 5 ALA C 70 PRO C 76 1 O ALA C 70 N LEU C 4 SHEET 4 D 5 LEU C 106 THR C 113 1 O SER C 108 N PHE C 73 SHEET 5 D 5 THR C 162 ILE C 164 1 O THR C 163 N THR C 113 CISPEP 1 GLY A 51 GLY A 52 0 -6.77 CISPEP 2 GLY A 52 LYS A 53 0 -0.68 CISPEP 3 GLY A 114 THR A 115 0 -20.00 CISPEP 4 ASN A 196 GLY A 197 0 -8.75 CISPEP 5 ALA C 50 GLY C 51 0 -20.35 CISPEP 6 GLY C 51 GLY C 52 0 2.88 CISPEP 7 GLY C 52 LYS C 53 0 -9.58 CISPEP 8 GLY C 114 THR C 115 0 -24.53 CISPEP 9 ASN C 196 GLY C 197 0 -21.74 SITE 1 AC1 22 SER A 9 MET A 10 TYR A 11 GLY A 12 SITE 2 AC1 22 HIS A 13 ILE A 14 PRO A 76 THR A 77 SITE 3 AC1 22 ARG A 78 PHE A 79 SER A 112 THR A 113 SITE 4 AC1 22 GLY A 114 GLY A 116 GLY A 117 TYR A 142 SITE 5 AC1 22 EDO A 204 HOH A 208 HOH A 224 ASP C 91 SITE 6 AC1 22 HIS C 132 EDO C 204 SITE 1 AC2 4 ALA A 143 ALA A 144 GLN A 145 GLU A 146 SITE 1 AC3 6 THR A 41 GLY A 84 GLN A 85 HOH A 231 SITE 2 AC3 6 THR C 88 ASP C 91 SITE 1 AC4 3 LEU A 191 LYS A 194 GLU C 48 SITE 1 AC5 4 ARG A 37 GLU A 40 THR A 54 GLN A 55 SITE 1 AC6 4 TRP A 97 HOH A 247 FMN C 198 EDO C 199 SITE 1 AC7 5 GLY A 114 THR A 115 FMN A 198 TRP C 97 SITE 2 AC7 5 EDO C 204 SITE 1 AC8 3 ALA A 22 SER A 26 VAL A 33 SITE 1 AC9 4 TYR A 183 GLU A 186 TYR A 187 HOH A 239 SITE 1 BC1 22 ASP A 91 HIS A 132 EDO A 203 SER C 9 SITE 2 BC1 22 MET C 10 TYR C 11 GLY C 12 HIS C 13 SITE 3 BC1 22 ILE C 14 PRO C 76 THR C 77 ARG C 78 SITE 4 BC1 22 PHE C 79 SER C 112 THR C 113 GLY C 114 SITE 5 BC1 22 THR C 115 GLY C 117 TYR C 142 EDO C 199 SITE 6 BC1 22 HOH C 214 HOH C 232 SITE 1 BC2 4 EDO A 203 GLY C 114 THR C 115 FMN C 198 SITE 1 BC3 3 LYS C 2 GLU C 32 ASP C 67 SITE 1 BC4 6 TYR C 7 TYR C 8 SER C 9 ARG C 37 SITE 2 BC4 6 VAL C 38 GLN C 55 SITE 1 BC5 6 TYR C 11 GLY C 12 HIS C 13 THR C 16 SITE 2 BC5 6 GLN C 172 PRO C 173 SITE 1 BC6 2 ARG C 171 GLN C 172 SITE 1 BC7 4 FMN A 198 EDO A 204 TRP C 97 HOH C 242 CRYST1 94.350 94.350 175.380 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010599 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010599 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005702 0.00000