HEADER LIPOPROTEIN 14-SEP-07 2RA2 TITLE X-RAY STRUCTURE OF THE Q7CPV8 PROTEIN FROM SALMONELLA TITLE 2 TYPHIMURIUM AT THE RESOLUTION 1.9 A. NORTHEAST STRUCTURAL TITLE 3 GENOMICS CONSORTIUM TARGET STR88A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE LIPOPROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: RESIDUES 21-75; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM LT2; SOURCE 3 ORGANISM_TAXID: 99287; SOURCE 4 STRAIN: SGSC1412; SOURCE 5 ATCC: 700720; SOURCE 6 GENE: YGDI, STM2983; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS X-RAY, NESG, STR88A, Q7CPV8, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, LIPOPROTEIN, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR A.P.KUZIN,M.SU,J.SEETHARAMAN,S.M.VOROBIEV,H.WANG,L.MAO, AUTHOR 2 K.CUNNINGHAM,R.XIAO,J.LIU,M.C.BARAN,T.B.ACTON,B.ROST, AUTHOR 3 G.T.MONTELIONE,J.F.HUNT,L.TONG,NORTHEAST STRUCTURAL AUTHOR 4 GENOMICS CONSORTIUM (NESG) REVDAT 2 24-FEB-09 2RA2 1 VERSN REVDAT 1 09-OCT-07 2RA2 0 JRNL AUTH A.P.KUZIN,M.SU,J.SEETHARAMAN,S.M.VOROBIEV,H.WANG, JRNL AUTH 2 L.MAO,K.CUNNINGHAM,R.XIAO,J.LIU,M.C.BARAN, JRNL AUTH 3 T.B.ACTON,B.ROST,G.T.MONTELIONE,J.F.HUNT,L.TONG JRNL TITL X-RAY STRUCTURE OF THE Q7CPV8 PROTEIN FROM JRNL TITL 2 SALMONELLA TYPHIMURIUM AT THE RESOLUTION 1.9 A. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 104229.720 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 58453 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2931 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.01 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 7.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 877 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE : 0.2140 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 39 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.034 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2552 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 236 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.64000 REMARK 3 B22 (A**2) : -1.00000 REMARK 3 B33 (A**2) : -3.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : -0.02 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.12 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.73 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 49.04 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FRIEDEL PAIRS WERE USED FOR REMARK 3 PHASING. BULK SOLVENT MODEL HAS BEEN USED IN REFINEMENT REMARK 4 REMARK 4 2RA2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-07. REMARK 100 THE RCSB ID CODE IS RCSB044613. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97900 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62778 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 24.000 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SNB REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE STRUCTURE FACTOR FILE CONTAINS FRIEDEL PAIRS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% PEG 4000, 100MM NH4CL, 100MM REMARK 280 TRIS-HCL, PH 9.0, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.51000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.51000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.14600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.21300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.14600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.21300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.51000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.14600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.21300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.51000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.14600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.21300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6, 7, 8 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 7 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6650 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 110.42600 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 109.02000 REMARK 350 REMARK 350 BIOMOLECULE: 8 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6460 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 110.42600 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 109.02000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 HIS A 59 REMARK 465 HIS A 60 REMARK 465 HIS A 61 REMARK 465 HIS A 62 REMARK 465 HIS A 63 REMARK 465 HIS A 64 REMARK 465 HIS B 60 REMARK 465 HIS B 61 REMARK 465 HIS B 62 REMARK 465 HIS B 63 REMARK 465 HIS B 64 REMARK 465 MSE C 1 REMARK 465 SER C 2 REMARK 465 GLU C 58 REMARK 465 HIS C 59 REMARK 465 HIS C 60 REMARK 465 HIS C 61 REMARK 465 HIS C 62 REMARK 465 HIS C 63 REMARK 465 HIS C 64 REMARK 465 MSE D 1 REMARK 465 LEU D 57 REMARK 465 GLU D 58 REMARK 465 HIS D 59 REMARK 465 HIS D 60 REMARK 465 HIS D 61 REMARK 465 HIS D 62 REMARK 465 HIS D 63 REMARK 465 HIS D 64 REMARK 465 MSE E 1 REMARK 465 SER E 2 REMARK 465 GLY E 3 REMARK 465 LEU E 57 REMARK 465 GLU E 58 REMARK 465 HIS E 59 REMARK 465 HIS E 60 REMARK 465 HIS E 61 REMARK 465 HIS E 62 REMARK 465 HIS E 63 REMARK 465 HIS E 64 REMARK 465 MSE F 1 REMARK 465 SER F 2 REMARK 465 ASN F 56 REMARK 465 LEU F 57 REMARK 465 GLU F 58 REMARK 465 HIS F 59 REMARK 465 HIS F 60 REMARK 465 HIS F 61 REMARK 465 HIS F 62 REMARK 465 HIS F 63 REMARK 465 HIS F 64 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 55 CD GLU A 55 OE2 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 36 0.85 -60.46 REMARK 500 ALA B 53 -156.42 -101.49 REMARK 500 LEU B 54 19.67 -152.54 REMARK 500 GLU B 55 -73.30 -47.74 REMARK 500 ASP C 12 30.97 -84.25 REMARK 500 ASP D 12 33.74 -82.71 REMARK 500 GLU D 55 -157.10 -143.12 REMARK 500 ASN E 5 -34.86 -131.57 REMARK 500 GLU E 55 -147.71 -101.50 REMARK 500 LEU F 54 -157.01 -89.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: STR88A RELATED DB: TARGETDB REMARK 900 RELATED ID: 2JN0 RELATED DB: PDB REMARK 900 SOLUTION NMR STRUCTURE OF THE YGDR PROTEIN FROM ESCHERICHIA REMARK 900 COLI (A HOMOLOG) DBREF 2RA2 A 2 56 UNP Q7CPV8 Q7CPV8_SALTY 21 75 DBREF 2RA2 B 2 56 UNP Q7CPV8 Q7CPV8_SALTY 21 75 DBREF 2RA2 C 2 56 UNP Q7CPV8 Q7CPV8_SALTY 21 75 DBREF 2RA2 D 2 56 UNP Q7CPV8 Q7CPV8_SALTY 21 75 DBREF 2RA2 E 2 56 UNP Q7CPV8 Q7CPV8_SALTY 21 75 DBREF 2RA2 F 2 56 UNP Q7CPV8 Q7CPV8_SALTY 21 75 SEQADV 2RA2 MSE A 1 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 LEU A 57 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 GLU A 58 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS A 59 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS A 60 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS A 61 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS A 62 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS A 63 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS A 64 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 MSE B 1 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 LEU B 57 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 GLU B 58 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS B 59 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS B 60 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS B 61 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS B 62 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS B 63 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS B 64 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 MSE C 1 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 LEU C 57 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 GLU C 58 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS C 59 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS C 60 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS C 61 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS C 62 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS C 63 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS C 64 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 MSE D 1 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 LEU D 57 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 GLU D 58 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS D 59 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS D 60 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS D 61 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS D 62 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS D 63 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS D 64 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 MSE E 1 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 LEU E 57 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 GLU E 58 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS E 59 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS E 60 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS E 61 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS E 62 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS E 63 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS E 64 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 MSE F 1 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 LEU F 57 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 GLU F 58 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS F 59 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS F 60 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS F 61 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS F 62 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS F 63 UNP Q7CPV8 EXPRESSION TAG SEQADV 2RA2 HIS F 64 UNP Q7CPV8 EXPRESSION TAG SEQRES 1 A 64 MSE SER GLY PRO ASN TYR VAL MSE HIS THR ASN ASP GLY SEQRES 2 A 64 ARG SER ILE VAL THR ASP GLY LYS PRO GLN THR ASP ASN SEQRES 3 A 64 ASP THR GLY MSE ILE SER TYR LYS ASP ALA ASN GLY ASN SEQRES 4 A 64 LYS GLN GLN ILE ASN ARG THR ASP VAL LYS GLU MSE VAL SEQRES 5 A 64 ALA LEU GLU ASN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 64 MSE SER GLY PRO ASN TYR VAL MSE HIS THR ASN ASP GLY SEQRES 2 B 64 ARG SER ILE VAL THR ASP GLY LYS PRO GLN THR ASP ASN SEQRES 3 B 64 ASP THR GLY MSE ILE SER TYR LYS ASP ALA ASN GLY ASN SEQRES 4 B 64 LYS GLN GLN ILE ASN ARG THR ASP VAL LYS GLU MSE VAL SEQRES 5 B 64 ALA LEU GLU ASN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 64 MSE SER GLY PRO ASN TYR VAL MSE HIS THR ASN ASP GLY SEQRES 2 C 64 ARG SER ILE VAL THR ASP GLY LYS PRO GLN THR ASP ASN SEQRES 3 C 64 ASP THR GLY MSE ILE SER TYR LYS ASP ALA ASN GLY ASN SEQRES 4 C 64 LYS GLN GLN ILE ASN ARG THR ASP VAL LYS GLU MSE VAL SEQRES 5 C 64 ALA LEU GLU ASN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 64 MSE SER GLY PRO ASN TYR VAL MSE HIS THR ASN ASP GLY SEQRES 2 D 64 ARG SER ILE VAL THR ASP GLY LYS PRO GLN THR ASP ASN SEQRES 3 D 64 ASP THR GLY MSE ILE SER TYR LYS ASP ALA ASN GLY ASN SEQRES 4 D 64 LYS GLN GLN ILE ASN ARG THR ASP VAL LYS GLU MSE VAL SEQRES 5 D 64 ALA LEU GLU ASN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 E 64 MSE SER GLY PRO ASN TYR VAL MSE HIS THR ASN ASP GLY SEQRES 2 E 64 ARG SER ILE VAL THR ASP GLY LYS PRO GLN THR ASP ASN SEQRES 3 E 64 ASP THR GLY MSE ILE SER TYR LYS ASP ALA ASN GLY ASN SEQRES 4 E 64 LYS GLN GLN ILE ASN ARG THR ASP VAL LYS GLU MSE VAL SEQRES 5 E 64 ALA LEU GLU ASN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 F 64 MSE SER GLY PRO ASN TYR VAL MSE HIS THR ASN ASP GLY SEQRES 2 F 64 ARG SER ILE VAL THR ASP GLY LYS PRO GLN THR ASP ASN SEQRES 3 F 64 ASP THR GLY MSE ILE SER TYR LYS ASP ALA ASN GLY ASN SEQRES 4 F 64 LYS GLN GLN ILE ASN ARG THR ASP VAL LYS GLU MSE VAL SEQRES 5 F 64 ALA LEU GLU ASN LEU GLU HIS HIS HIS HIS HIS HIS MODRES 2RA2 MSE A 8 MET SELENOMETHIONINE MODRES 2RA2 MSE A 30 MET SELENOMETHIONINE MODRES 2RA2 MSE A 51 MET SELENOMETHIONINE MODRES 2RA2 MSE B 1 MET SELENOMETHIONINE MODRES 2RA2 MSE B 8 MET SELENOMETHIONINE MODRES 2RA2 MSE B 30 MET SELENOMETHIONINE MODRES 2RA2 MSE B 51 MET SELENOMETHIONINE MODRES 2RA2 MSE C 8 MET SELENOMETHIONINE MODRES 2RA2 MSE C 30 MET SELENOMETHIONINE MODRES 2RA2 MSE C 51 MET SELENOMETHIONINE MODRES 2RA2 MSE D 8 MET SELENOMETHIONINE MODRES 2RA2 MSE D 30 MET SELENOMETHIONINE MODRES 2RA2 MSE D 51 MET SELENOMETHIONINE MODRES 2RA2 MSE E 8 MET SELENOMETHIONINE MODRES 2RA2 MSE E 30 MET SELENOMETHIONINE MODRES 2RA2 MSE E 51 MET SELENOMETHIONINE MODRES 2RA2 MSE F 8 MET SELENOMETHIONINE MODRES 2RA2 MSE F 30 MET SELENOMETHIONINE MODRES 2RA2 MSE F 51 MET SELENOMETHIONINE HET MSE A 8 8 HET MSE A 30 8 HET MSE A 51 8 HET MSE B 1 8 HET MSE B 8 8 HET MSE B 30 8 HET MSE B 51 8 HET MSE C 8 8 HET MSE C 30 8 HET MSE C 51 8 HET MSE D 8 8 HET MSE D 30 8 HET MSE D 51 8 HET MSE E 8 8 HET MSE E 30 8 HET MSE E 51 8 HET MSE F 8 8 HET MSE F 30 8 HET MSE F 51 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 19(C5 H11 N O2 SE) FORMUL 7 HOH *236(H2 O) HELIX 1 1 ASN A 44 THR A 46 5 3 HELIX 2 2 ASN E 44 THR E 46 5 3 SHEET 1 A 6 SER A 15 VAL A 17 0 SHEET 2 A 6 TYR A 6 THR A 10 -1 N MSE A 8 O ILE A 16 SHEET 3 A 6 VAL A 48 ALA A 53 -1 O GLU A 50 N HIS A 9 SHEET 4 A 6 LYS F 40 ILE F 43 -1 O GLN F 42 N MSE A 51 SHEET 5 A 6 ILE F 31 LYS F 34 -1 N TYR F 33 O GLN F 41 SHEET 6 A 6 GLN F 23 THR F 24 -1 N GLN F 23 O SER F 32 SHEET 1 B 3 GLN A 23 THR A 24 0 SHEET 2 B 3 ILE A 31 LYS A 34 -1 O SER A 32 N GLN A 23 SHEET 3 B 3 LYS A 40 ILE A 43 -1 O ILE A 43 N ILE A 31 SHEET 1 C 3 SER B 15 ASP B 19 0 SHEET 2 C 3 ASN B 5 THR B 10 -1 N MSE B 8 O ILE B 16 SHEET 3 C 3 VAL B 48 VAL B 52 -1 O GLU B 50 N HIS B 9 SHEET 1 D 6 GLN B 23 THR B 24 0 SHEET 2 D 6 ILE B 31 LYS B 34 -1 O SER B 32 N GLN B 23 SHEET 3 D 6 LYS B 40 ILE B 43 -1 O GLN B 41 N TYR B 33 SHEET 4 D 6 VAL F 48 ALA F 53 -1 O MSE F 51 N GLN B 42 SHEET 5 D 6 ASN F 5 THR F 10 -1 N HIS F 9 O GLU F 50 SHEET 6 D 6 SER F 15 ASP F 19 -1 O THR F 18 N TYR F 6 SHEET 1 E 6 SER C 15 ASP C 19 0 SHEET 2 E 6 ASN C 5 THR C 10 -1 N MSE C 8 O ILE C 16 SHEET 3 E 6 VAL C 48 ALA C 53 -1 O VAL C 52 N VAL C 7 SHEET 4 E 6 LYS D 40 ILE D 43 -1 O GLN D 42 N MSE C 51 SHEET 5 E 6 ILE D 31 LYS D 34 -1 N TYR D 33 O GLN D 41 SHEET 6 E 6 GLN D 23 THR D 24 -1 N GLN D 23 O SER D 32 SHEET 1 F 6 GLN C 23 THR C 24 0 SHEET 2 F 6 ILE C 31 LYS C 34 -1 O SER C 32 N GLN C 23 SHEET 3 F 6 LYS C 40 ILE C 43 -1 O GLN C 41 N TYR C 33 SHEET 4 F 6 VAL E 48 ALA E 53 -1 O MSE E 51 N GLN C 42 SHEET 5 F 6 TYR E 6 THR E 10 -1 N HIS E 9 O LYS E 49 SHEET 6 F 6 SER E 15 THR E 18 -1 O THR E 18 N TYR E 6 SHEET 1 G 3 SER D 15 THR D 18 0 SHEET 2 G 3 ASN D 5 THR D 10 -1 N MSE D 8 O ILE D 16 SHEET 3 G 3 VAL D 48 LEU D 54 -1 O LEU D 54 N ASN D 5 SHEET 1 H 3 GLN E 23 THR E 24 0 SHEET 2 H 3 ILE E 31 LYS E 34 -1 O SER E 32 N GLN E 23 SHEET 3 H 3 LYS E 40 ILE E 43 -1 O GLN E 41 N TYR E 33 LINK C VAL A 7 N MSE A 8 1555 1555 1.33 LINK C MSE A 8 N HIS A 9 1555 1555 1.33 LINK C GLY A 29 N MSE A 30 1555 1555 1.33 LINK C MSE A 30 N ILE A 31 1555 1555 1.32 LINK C GLU A 50 N MSE A 51 1555 1555 1.33 LINK C MSE A 51 N VAL A 52 1555 1555 1.33 LINK C MSE B 1 N SER B 2 1555 1555 1.33 LINK C VAL B 7 N MSE B 8 1555 1555 1.33 LINK C MSE B 8 N HIS B 9 1555 1555 1.33 LINK C GLY B 29 N MSE B 30 1555 1555 1.33 LINK C MSE B 30 N ILE B 31 1555 1555 1.33 LINK C GLU B 50 N MSE B 51 1555 1555 1.33 LINK C MSE B 51 N VAL B 52 1555 1555 1.33 LINK C VAL C 7 N MSE C 8 1555 1555 1.33 LINK C MSE C 8 N HIS C 9 1555 1555 1.33 LINK C GLY C 29 N MSE C 30 1555 1555 1.33 LINK C MSE C 30 N ILE C 31 1555 1555 1.33 LINK C GLU C 50 N MSE C 51 1555 1555 1.33 LINK C MSE C 51 N VAL C 52 1555 1555 1.33 LINK C VAL D 7 N MSE D 8 1555 1555 1.33 LINK C MSE D 8 N HIS D 9 1555 1555 1.33 LINK C GLY D 29 N MSE D 30 1555 1555 1.33 LINK C MSE D 30 N ILE D 31 1555 1555 1.33 LINK C GLU D 50 N MSE D 51 1555 1555 1.33 LINK C MSE D 51 N VAL D 52 1555 1555 1.33 LINK C VAL E 7 N MSE E 8 1555 1555 1.33 LINK C MSE E 8 N HIS E 9 1555 1555 1.33 LINK C GLY E 29 N MSE E 30 1555 1555 1.33 LINK C MSE E 30 N ILE E 31 1555 1555 1.33 LINK C GLU E 50 N MSE E 51 1555 1555 1.33 LINK C MSE E 51 N VAL E 52 1555 1555 1.33 LINK C VAL F 7 N MSE F 8 1555 1555 1.33 LINK C MSE F 8 N HIS F 9 1555 1555 1.33 LINK C GLY F 29 N MSE F 30 1555 1555 1.33 LINK C MSE F 30 N ILE F 31 1555 1555 1.33 LINK C GLU F 50 N MSE F 51 1555 1555 1.33 LINK C MSE F 51 N VAL F 52 1555 1555 1.33 CRYST1 68.292 110.426 109.020 90.00 90.00 90.00 C 2 2 21 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014643 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009056 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009173 0.00000