data_2RAZ # _entry.id 2RAZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2RAZ pdb_00002raz 10.2210/pdb2raz/pdb RCSB RCSB044641 ? ? WWPDB D_1000044641 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 181L . unspecified PDB 1LGU . unspecified PDB 2RAY . unspecified PDB 2RB0 . unspecified PDB 2RB1 . unspecified PDB 2RB2 . unspecified PDB 2RBN . unspecified PDB 2RBO . unspecified PDB 2RBP . unspecified PDB 2RBQ . unspecified PDB 2RBR . unspecified PDB 2RAS . unspecified # _pdbx_database_status.entry_id 2RAZ _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-09-17 _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Graves, A.P.' 1 'Boyce, S.E.' 2 'Shoichet, B.K.' 3 # _citation.id primary _citation.title 'Rescoring docking hit lists for model cavity sites: predictions and experimental testing.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 377 _citation.page_first 914 _citation.page_last 934 _citation.year 2008 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18280498 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2008.01.049 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Graves, A.P.' 1 ? primary 'Shivakumar, D.M.' 2 ? primary 'Boyce, S.E.' 3 ? primary 'Jacobson, M.P.' 4 ? primary 'Case, D.A.' 5 ? primary 'Shoichet, B.K.' 6 ? # _cell.length_a 60.322 _cell.length_b 60.322 _cell.length_c 96.830 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 2RAZ _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.entry_id 2RAZ _symmetry.Int_Tables_number 154 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Lysozyme 18359.023 1 3.2.1.17 L99A ? ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 3 ? ? ? ? 3 non-polymer syn '1-(methylsulfanyl)-4-nitrobenzene' 169.201 1 ? ? ? ? 4 water nat water 18.015 270 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Lysis protein; Muramidase; Endolysin' # _entity_name_sys.entity_id 1 _entity_name_sys.name E.C.3.2.1.17 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRAAAINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA YK ; _entity_poly.pdbx_seq_one_letter_code_can ;MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRAAAINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA YK ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 ILE n 1 4 PHE n 1 5 GLU n 1 6 MET n 1 7 LEU n 1 8 ARG n 1 9 ILE n 1 10 ASP n 1 11 GLU n 1 12 GLY n 1 13 LEU n 1 14 ARG n 1 15 LEU n 1 16 LYS n 1 17 ILE n 1 18 TYR n 1 19 LYS n 1 20 ASP n 1 21 THR n 1 22 GLU n 1 23 GLY n 1 24 TYR n 1 25 TYR n 1 26 THR n 1 27 ILE n 1 28 GLY n 1 29 ILE n 1 30 GLY n 1 31 HIS n 1 32 LEU n 1 33 LEU n 1 34 THR n 1 35 LYS n 1 36 SER n 1 37 PRO n 1 38 SER n 1 39 LEU n 1 40 ASN n 1 41 ALA n 1 42 ALA n 1 43 LYS n 1 44 SER n 1 45 GLU n 1 46 LEU n 1 47 ASP n 1 48 LYS n 1 49 ALA n 1 50 ILE n 1 51 GLY n 1 52 ARG n 1 53 ASN n 1 54 THR n 1 55 ASN n 1 56 GLY n 1 57 VAL n 1 58 ILE n 1 59 THR n 1 60 LYS n 1 61 ASP n 1 62 GLU n 1 63 ALA n 1 64 GLU n 1 65 LYS n 1 66 LEU n 1 67 PHE n 1 68 ASN n 1 69 GLN n 1 70 ASP n 1 71 VAL n 1 72 ASP n 1 73 ALA n 1 74 ALA n 1 75 VAL n 1 76 ARG n 1 77 GLY n 1 78 ILE n 1 79 LEU n 1 80 ARG n 1 81 ASN n 1 82 ALA n 1 83 LYS n 1 84 LEU n 1 85 LYS n 1 86 PRO n 1 87 VAL n 1 88 TYR n 1 89 ASP n 1 90 SER n 1 91 LEU n 1 92 ASP n 1 93 ALA n 1 94 VAL n 1 95 ARG n 1 96 ARG n 1 97 ALA n 1 98 ALA n 1 99 ALA n 1 100 ILE n 1 101 ASN n 1 102 MET n 1 103 VAL n 1 104 PHE n 1 105 GLN n 1 106 MET n 1 107 GLY n 1 108 GLU n 1 109 THR n 1 110 GLY n 1 111 VAL n 1 112 ALA n 1 113 GLY n 1 114 PHE n 1 115 THR n 1 116 ASN n 1 117 SER n 1 118 LEU n 1 119 ARG n 1 120 MET n 1 121 LEU n 1 122 GLN n 1 123 GLN n 1 124 LYS n 1 125 ARG n 1 126 TRP n 1 127 ASP n 1 128 GLU n 1 129 ALA n 1 130 ALA n 1 131 VAL n 1 132 ASN n 1 133 LEU n 1 134 ALA n 1 135 LYS n 1 136 SER n 1 137 ARG n 1 138 TRP n 1 139 TYR n 1 140 ASN n 1 141 GLN n 1 142 THR n 1 143 PRO n 1 144 ASN n 1 145 ARG n 1 146 ALA n 1 147 LYS n 1 148 ARG n 1 149 VAL n 1 150 ILE n 1 151 THR n 1 152 THR n 1 153 PHE n 1 154 ARG n 1 155 THR n 1 156 GLY n 1 157 THR n 1 158 TRP n 1 159 ASP n 1 160 ALA n 1 161 TYR n 1 162 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus 'T4-like viruses' _entity_src_gen.pdbx_gene_src_gene E _entity_src_gen.gene_src_species 'Enterobacteria phage T4 sensu lato' _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Enterobacteria phage T4' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10665 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name M13 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name UNP _struct_ref.db_code LYS_BPT4 _struct_ref.pdbx_db_accession P00720 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA YK ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2RAZ _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 162 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00720 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 162 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 162 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2RAZ THR X 54 ? UNP P00720 CYS 54 'engineered mutation' 54 1 1 2RAZ ALA X 97 ? UNP P00720 CYS 97 'engineered mutation' 97 2 1 2RAZ ALA X 99 ? UNP P00720 LEU 99 'engineered mutation' 99 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 259 non-polymer . '1-(methylsulfanyl)-4-nitrobenzene' ? 'C7 H7 N O2 S' 169.201 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2RAZ _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.77 _exptl_crystal.density_percent_sol 55.59 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.1 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details ;2.2M sodium-potassium phosphate, 0.05M beta-mercaptoethanol, 0.05M 2-hydroxyethyldisulfide, pH 7.1, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2006-11-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 2RAZ _reflns.d_resolution_high 1.640 _reflns.d_resolution_low 52.270 _reflns.number_obs 25592 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_netI_over_sigmaI 12.800 _reflns.pdbx_chi_squared 1.004 _reflns.pdbx_redundancy 4.600 _reflns.percent_possible_obs 99.800 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 25643 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.64 _reflns_shell.d_res_low 1.70 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.454 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 1.004 _reflns_shell.pdbx_redundancy 4.50 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2520 _reflns_shell.percent_possible_all 99.90 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2RAZ _refine.ls_d_res_high 1.641 _refine.ls_d_res_low 52.270 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.810 _refine.ls_number_reflns_obs 25546 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.192 _refine.ls_R_factor_R_work 0.191 _refine.ls_R_factor_R_free 0.221 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1300 _refine.B_iso_mean 15.366 _refine.aniso_B[1][1] 0.130 _refine.aniso_B[2][2] 0.130 _refine.aniso_B[3][3] -0.200 _refine.aniso_B[1][2] 0.070 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.936 _refine.pdbx_overall_ESU_R 0.096 _refine.pdbx_overall_ESU_R_Free 0.096 _refine.overall_SU_ML 0.057 _refine.overall_SU_B 1.632 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 25595 _refine.ls_R_factor_all 0.192 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model 184L _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1322 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 272 _refine_hist.number_atoms_total 1620 _refine_hist.d_res_high 1.641 _refine_hist.d_res_low 52.270 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1371 0.011 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1858 1.146 1.968 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 174 4.558 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 65 32.605 23.077 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 252 11.820 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15 16.137 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 204 0.070 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1030 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 699 0.202 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 954 0.306 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 180 0.140 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 39 0.186 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 27 0.093 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 846 0.662 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1325 1.030 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 599 1.881 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 526 2.798 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.641 _refine_ls_shell.d_res_low 1.683 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.890 _refine_ls_shell.number_reflns_R_work 1780 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.349 _refine_ls_shell.R_factor_R_free 0.443 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 96 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1876 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2RAZ _struct.title '4-(methylthio)nitrobenzene in complex with T4 lysozyme L99A' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2RAZ _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'protein cavities, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 2 ? GLY A 12 ? ASN X 2 GLY X 12 1 ? 11 HELX_P HELX_P2 2 SER A 38 ? GLY A 51 ? SER X 38 GLY X 51 1 ? 14 HELX_P HELX_P3 3 THR A 59 ? ASN A 81 ? THR X 59 ASN X 81 1 ? 23 HELX_P HELX_P4 4 LEU A 84 ? LEU A 91 ? LEU X 84 LEU X 91 1 ? 8 HELX_P HELX_P5 5 ASP A 92 ? VAL A 111 ? ASP X 92 VAL X 111 1 ? 20 HELX_P HELX_P6 6 PHE A 114 ? GLN A 123 ? PHE X 114 GLN X 123 1 ? 10 HELX_P HELX_P7 7 ARG A 125 ? ALA A 134 ? ARG X 125 ALA X 134 1 ? 10 HELX_P HELX_P8 8 SER A 136 ? THR A 142 ? SER X 136 THR X 142 1 ? 7 HELX_P HELX_P9 9 THR A 142 ? GLY A 156 ? THR X 142 GLY X 156 1 ? 15 HELX_P HELX_P10 10 TRP A 158 ? LYS A 162 ? TRP X 158 LYS X 162 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 14 ? LYS A 19 ? ARG X 14 LYS X 19 A 2 TYR A 25 ? GLY A 28 ? TYR X 25 GLY X 28 A 3 HIS A 31 ? LEU A 32 ? HIS X 31 LEU X 32 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 18 ? N TYR X 18 O THR A 26 ? O THR X 26 A 2 3 N ILE A 27 ? N ILE X 27 O HIS A 31 ? O HIS X 31 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software X PO4 2001 ? 8 'BINDING SITE FOR RESIDUE PO4 X 2001' AC2 Software X PO4 2002 ? 5 'BINDING SITE FOR RESIDUE PO4 X 2002' AC3 Software X PO4 2003 ? 6 'BINDING SITE FOR RESIDUE PO4 X 2003' AC4 Software X 259 1001 ? 9 'BINDING SITE FOR RESIDUE 259 X 1001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 ARG A 14 ? ARG X 14 . ? 4_565 ? 2 AC1 8 LYS A 19 ? LYS X 19 . ? 4_565 ? 3 AC1 8 ARG A 125 ? ARG X 125 . ? 1_555 ? 4 AC1 8 TRP A 126 ? TRP X 126 . ? 1_555 ? 5 AC1 8 ASP A 127 ? ASP X 127 . ? 1_555 ? 6 AC1 8 GLU A 128 ? GLU X 128 . ? 1_555 ? 7 AC1 8 HOH F . ? HOH X 2039 . ? 1_555 ? 8 AC1 8 HOH F . ? HOH X 2148 . ? 1_555 ? 9 AC2 5 GLN A 122 ? GLN X 122 . ? 4_455 ? 10 AC2 5 ASN A 144 ? ASN X 144 . ? 1_555 ? 11 AC2 5 ARG A 148 ? ARG X 148 . ? 1_555 ? 12 AC2 5 HOH F . ? HOH X 2045 . ? 4_455 ? 13 AC2 5 HOH F . ? HOH X 2248 . ? 1_555 ? 14 AC3 6 THR A 34 ? THR X 34 . ? 1_555 ? 15 AC3 6 LYS A 35 ? LYS X 35 . ? 1_555 ? 16 AC3 6 HOH F . ? HOH X 2081 . ? 2_564 ? 17 AC3 6 HOH F . ? HOH X 2199 . ? 1_555 ? 18 AC3 6 HOH F . ? HOH X 2207 . ? 2_564 ? 19 AC3 6 HOH F . ? HOH X 2231 . ? 1_555 ? 20 AC4 9 ILE A 78 ? ILE X 78 . ? 1_555 ? 21 AC4 9 LEU A 84 ? LEU X 84 . ? 1_555 ? 22 AC4 9 TYR A 88 ? TYR X 88 . ? 1_555 ? 23 AC4 9 LEU A 91 ? LEU X 91 . ? 1_555 ? 24 AC4 9 ALA A 99 ? ALA X 99 . ? 1_555 ? 25 AC4 9 MET A 102 ? MET X 102 . ? 1_555 ? 26 AC4 9 PHE A 114 ? PHE X 114 . ? 1_555 ? 27 AC4 9 LEU A 118 ? LEU X 118 . ? 1_555 ? 28 AC4 9 LEU A 133 ? LEU X 133 . ? 1_555 ? # _atom_sites.entry_id 2RAZ _atom_sites.fract_transf_matrix[1][1] 0.016578 _atom_sites.fract_transf_matrix[1][2] 0.009571 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019142 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010327 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET X . n A 1 2 ASN 2 2 2 ASN ASN X . n A 1 3 ILE 3 3 3 ILE ILE X . n A 1 4 PHE 4 4 4 PHE PHE X . n A 1 5 GLU 5 5 5 GLU GLU X . n A 1 6 MET 6 6 6 MET MET X . n A 1 7 LEU 7 7 7 LEU LEU X . n A 1 8 ARG 8 8 8 ARG ARG X . n A 1 9 ILE 9 9 9 ILE ILE X . n A 1 10 ASP 10 10 10 ASP ASP X . n A 1 11 GLU 11 11 11 GLU GLU X . n A 1 12 GLY 12 12 12 GLY GLY X . n A 1 13 LEU 13 13 13 LEU LEU X . n A 1 14 ARG 14 14 14 ARG ARG X . n A 1 15 LEU 15 15 15 LEU LEU X . n A 1 16 LYS 16 16 16 LYS LYS X . n A 1 17 ILE 17 17 17 ILE ILE X . n A 1 18 TYR 18 18 18 TYR TYR X . n A 1 19 LYS 19 19 19 LYS LYS X . n A 1 20 ASP 20 20 20 ASP ASP X . n A 1 21 THR 21 21 21 THR THR X . n A 1 22 GLU 22 22 22 GLU GLU X . n A 1 23 GLY 23 23 23 GLY GLY X . n A 1 24 TYR 24 24 24 TYR TYR X . n A 1 25 TYR 25 25 25 TYR TYR X . n A 1 26 THR 26 26 26 THR THR X . n A 1 27 ILE 27 27 27 ILE ILE X . n A 1 28 GLY 28 28 28 GLY GLY X . n A 1 29 ILE 29 29 29 ILE ILE X . n A 1 30 GLY 30 30 30 GLY GLY X . n A 1 31 HIS 31 31 31 HIS HIS X . n A 1 32 LEU 32 32 32 LEU LEU X . n A 1 33 LEU 33 33 33 LEU LEU X . n A 1 34 THR 34 34 34 THR THR X . n A 1 35 LYS 35 35 35 LYS LYS X . n A 1 36 SER 36 36 36 SER SER X . n A 1 37 PRO 37 37 37 PRO PRO X . n A 1 38 SER 38 38 38 SER SER X . n A 1 39 LEU 39 39 39 LEU LEU X . n A 1 40 ASN 40 40 40 ASN ASN X . n A 1 41 ALA 41 41 41 ALA ALA X . n A 1 42 ALA 42 42 42 ALA ALA X . n A 1 43 LYS 43 43 43 LYS LYS X . n A 1 44 SER 44 44 44 SER SER X . n A 1 45 GLU 45 45 45 GLU GLU X . n A 1 46 LEU 46 46 46 LEU LEU X . n A 1 47 ASP 47 47 47 ASP ASP X . n A 1 48 LYS 48 48 48 LYS LYS X . n A 1 49 ALA 49 49 49 ALA ALA X . n A 1 50 ILE 50 50 50 ILE ILE X . n A 1 51 GLY 51 51 51 GLY GLY X . n A 1 52 ARG 52 52 52 ARG ARG X . n A 1 53 ASN 53 53 53 ASN ASN X . n A 1 54 THR 54 54 54 THR THR X . n A 1 55 ASN 55 55 55 ASN ASN X . n A 1 56 GLY 56 56 56 GLY GLY X . n A 1 57 VAL 57 57 57 VAL VAL X . n A 1 58 ILE 58 58 58 ILE ILE X . n A 1 59 THR 59 59 59 THR THR X . n A 1 60 LYS 60 60 60 LYS LYS X . n A 1 61 ASP 61 61 61 ASP ASP X . n A 1 62 GLU 62 62 62 GLU GLU X . n A 1 63 ALA 63 63 63 ALA ALA X . n A 1 64 GLU 64 64 64 GLU GLU X . n A 1 65 LYS 65 65 65 LYS LYS X . n A 1 66 LEU 66 66 66 LEU LEU X . n A 1 67 PHE 67 67 67 PHE PHE X . n A 1 68 ASN 68 68 68 ASN ASN X . n A 1 69 GLN 69 69 69 GLN GLN X . n A 1 70 ASP 70 70 70 ASP ASP X . n A 1 71 VAL 71 71 71 VAL VAL X . n A 1 72 ASP 72 72 72 ASP ASP X . n A 1 73 ALA 73 73 73 ALA ALA X . n A 1 74 ALA 74 74 74 ALA ALA X . n A 1 75 VAL 75 75 75 VAL VAL X . n A 1 76 ARG 76 76 76 ARG ARG X . n A 1 77 GLY 77 77 77 GLY GLY X . n A 1 78 ILE 78 78 78 ILE ILE X . n A 1 79 LEU 79 79 79 LEU LEU X . n A 1 80 ARG 80 80 80 ARG ARG X . n A 1 81 ASN 81 81 81 ASN ASN X . n A 1 82 ALA 82 82 82 ALA ALA X . n A 1 83 LYS 83 83 83 LYS LYS X . n A 1 84 LEU 84 84 84 LEU LEU X . n A 1 85 LYS 85 85 85 LYS LYS X . n A 1 86 PRO 86 86 86 PRO PRO X . n A 1 87 VAL 87 87 87 VAL VAL X . n A 1 88 TYR 88 88 88 TYR TYR X . n A 1 89 ASP 89 89 89 ASP ASP X . n A 1 90 SER 90 90 90 SER SER X . n A 1 91 LEU 91 91 91 LEU LEU X . n A 1 92 ASP 92 92 92 ASP ASP X . n A 1 93 ALA 93 93 93 ALA ALA X . n A 1 94 VAL 94 94 94 VAL VAL X . n A 1 95 ARG 95 95 95 ARG ARG X . n A 1 96 ARG 96 96 96 ARG ARG X . n A 1 97 ALA 97 97 97 ALA ALA X . n A 1 98 ALA 98 98 98 ALA ALA X . n A 1 99 ALA 99 99 99 ALA ALA X . n A 1 100 ILE 100 100 100 ILE ILE X . n A 1 101 ASN 101 101 101 ASN ASN X . n A 1 102 MET 102 102 102 MET MET X . n A 1 103 VAL 103 103 103 VAL VAL X . n A 1 104 PHE 104 104 104 PHE PHE X . n A 1 105 GLN 105 105 105 GLN GLN X . n A 1 106 MET 106 106 106 MET MET X . n A 1 107 GLY 107 107 107 GLY GLY X . n A 1 108 GLU 108 108 108 GLU GLU X . n A 1 109 THR 109 109 109 THR THR X . n A 1 110 GLY 110 110 110 GLY GLY X . n A 1 111 VAL 111 111 111 VAL VAL X . n A 1 112 ALA 112 112 112 ALA ALA X . n A 1 113 GLY 113 113 113 GLY GLY X . n A 1 114 PHE 114 114 114 PHE PHE X . n A 1 115 THR 115 115 115 THR THR X . n A 1 116 ASN 116 116 116 ASN ASN X . n A 1 117 SER 117 117 117 SER SER X . n A 1 118 LEU 118 118 118 LEU LEU X . n A 1 119 ARG 119 119 119 ARG ARG X . n A 1 120 MET 120 120 120 MET MET X . n A 1 121 LEU 121 121 121 LEU LEU X . n A 1 122 GLN 122 122 122 GLN GLN X . n A 1 123 GLN 123 123 123 GLN GLN X . n A 1 124 LYS 124 124 124 LYS LYS X . n A 1 125 ARG 125 125 125 ARG ARG X . n A 1 126 TRP 126 126 126 TRP TRP X . n A 1 127 ASP 127 127 127 ASP ASP X . n A 1 128 GLU 128 128 128 GLU GLU X . n A 1 129 ALA 129 129 129 ALA ALA X . n A 1 130 ALA 130 130 130 ALA ALA X . n A 1 131 VAL 131 131 131 VAL VAL X . n A 1 132 ASN 132 132 132 ASN ASN X . n A 1 133 LEU 133 133 133 LEU LEU X . n A 1 134 ALA 134 134 134 ALA ALA X . n A 1 135 LYS 135 135 135 LYS LYS X . n A 1 136 SER 136 136 136 SER SER X . n A 1 137 ARG 137 137 137 ARG ARG X . n A 1 138 TRP 138 138 138 TRP TRP X . n A 1 139 TYR 139 139 139 TYR TYR X . n A 1 140 ASN 140 140 140 ASN ASN X . n A 1 141 GLN 141 141 141 GLN GLN X . n A 1 142 THR 142 142 142 THR THR X . n A 1 143 PRO 143 143 143 PRO PRO X . n A 1 144 ASN 144 144 144 ASN ASN X . n A 1 145 ARG 145 145 145 ARG ARG X . n A 1 146 ALA 146 146 146 ALA ALA X . n A 1 147 LYS 147 147 147 LYS LYS X . n A 1 148 ARG 148 148 148 ARG ARG X . n A 1 149 VAL 149 149 149 VAL VAL X . n A 1 150 ILE 150 150 150 ILE ILE X . n A 1 151 THR 151 151 151 THR THR X . n A 1 152 THR 152 152 152 THR THR X . n A 1 153 PHE 153 153 153 PHE PHE X . n A 1 154 ARG 154 154 154 ARG ARG X . n A 1 155 THR 155 155 155 THR THR X . n A 1 156 GLY 156 156 156 GLY GLY X . n A 1 157 THR 157 157 157 THR THR X . n A 1 158 TRP 158 158 158 TRP TRP X . n A 1 159 ASP 159 159 159 ASP ASP X . n A 1 160 ALA 160 160 160 ALA ALA X . n A 1 161 TYR 161 161 161 TYR TYR X . n A 1 162 LYS 162 162 162 LYS LYS X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 1 2001 2001 PO4 PO4 X . C 2 PO4 1 2002 2002 PO4 PO4 X . D 2 PO4 1 2003 2003 PO4 PO4 X . E 3 259 1 1001 1001 259 259 X . F 4 HOH 1 2004 1 HOH HOH X . F 4 HOH 2 2005 2 HOH HOH X . F 4 HOH 3 2006 3 HOH HOH X . F 4 HOH 4 2007 4 HOH HOH X . F 4 HOH 5 2008 5 HOH HOH X . F 4 HOH 6 2009 6 HOH HOH X . F 4 HOH 7 2010 7 HOH HOH X . F 4 HOH 8 2011 8 HOH HOH X . F 4 HOH 9 2012 9 HOH HOH X . F 4 HOH 10 2013 10 HOH HOH X . F 4 HOH 11 2014 11 HOH HOH X . F 4 HOH 12 2015 12 HOH HOH X . F 4 HOH 13 2016 13 HOH HOH X . F 4 HOH 14 2017 14 HOH HOH X . F 4 HOH 15 2018 15 HOH HOH X . F 4 HOH 16 2019 16 HOH HOH X . F 4 HOH 17 2020 17 HOH HOH X . F 4 HOH 18 2021 18 HOH HOH X . F 4 HOH 19 2022 19 HOH HOH X . F 4 HOH 20 2023 20 HOH HOH X . F 4 HOH 21 2024 21 HOH HOH X . F 4 HOH 22 2025 22 HOH HOH X . F 4 HOH 23 2026 23 HOH HOH X . F 4 HOH 24 2027 24 HOH HOH X . F 4 HOH 25 2028 25 HOH HOH X . F 4 HOH 26 2029 26 HOH HOH X . F 4 HOH 27 2030 27 HOH HOH X . F 4 HOH 28 2031 28 HOH HOH X . F 4 HOH 29 2032 29 HOH HOH X . F 4 HOH 30 2033 30 HOH HOH X . F 4 HOH 31 2034 31 HOH HOH X . F 4 HOH 32 2035 32 HOH HOH X . F 4 HOH 33 2036 33 HOH HOH X . F 4 HOH 34 2037 34 HOH HOH X . F 4 HOH 35 2038 35 HOH HOH X . F 4 HOH 36 2039 36 HOH HOH X . F 4 HOH 37 2040 37 HOH HOH X . F 4 HOH 38 2041 38 HOH HOH X . F 4 HOH 39 2042 39 HOH HOH X . F 4 HOH 40 2043 40 HOH HOH X . F 4 HOH 41 2044 41 HOH HOH X . F 4 HOH 42 2045 42 HOH HOH X . F 4 HOH 43 2046 43 HOH HOH X . F 4 HOH 44 2047 44 HOH HOH X . F 4 HOH 45 2048 45 HOH HOH X . F 4 HOH 46 2049 46 HOH HOH X . F 4 HOH 47 2050 47 HOH HOH X . F 4 HOH 48 2051 48 HOH HOH X . F 4 HOH 49 2052 49 HOH HOH X . F 4 HOH 50 2053 50 HOH HOH X . F 4 HOH 51 2054 51 HOH HOH X . F 4 HOH 52 2055 52 HOH HOH X . F 4 HOH 53 2056 53 HOH HOH X . F 4 HOH 54 2057 54 HOH HOH X . F 4 HOH 55 2058 55 HOH HOH X . F 4 HOH 56 2059 56 HOH HOH X . F 4 HOH 57 2060 57 HOH HOH X . F 4 HOH 58 2061 58 HOH HOH X . F 4 HOH 59 2062 59 HOH HOH X . F 4 HOH 60 2063 60 HOH HOH X . F 4 HOH 61 2064 61 HOH HOH X . F 4 HOH 62 2065 62 HOH HOH X . F 4 HOH 63 2066 63 HOH HOH X . F 4 HOH 64 2067 64 HOH HOH X . F 4 HOH 65 2068 65 HOH HOH X . F 4 HOH 66 2069 66 HOH HOH X . F 4 HOH 67 2070 67 HOH HOH X . F 4 HOH 68 2071 68 HOH HOH X . F 4 HOH 69 2072 69 HOH HOH X . F 4 HOH 70 2073 70 HOH HOH X . F 4 HOH 71 2074 71 HOH HOH X . F 4 HOH 72 2075 72 HOH HOH X . F 4 HOH 73 2076 73 HOH HOH X . F 4 HOH 74 2077 74 HOH HOH X . F 4 HOH 75 2078 75 HOH HOH X . F 4 HOH 76 2079 76 HOH HOH X . F 4 HOH 77 2080 77 HOH HOH X . F 4 HOH 78 2081 78 HOH HOH X . F 4 HOH 79 2082 79 HOH HOH X . F 4 HOH 80 2083 80 HOH HOH X . F 4 HOH 81 2084 81 HOH HOH X . F 4 HOH 82 2085 82 HOH HOH X . F 4 HOH 83 2086 83 HOH HOH X . F 4 HOH 84 2087 84 HOH HOH X . F 4 HOH 85 2088 85 HOH HOH X . F 4 HOH 86 2089 86 HOH HOH X . F 4 HOH 87 2090 87 HOH HOH X . F 4 HOH 88 2091 88 HOH HOH X . F 4 HOH 89 2092 89 HOH HOH X . F 4 HOH 90 2093 90 HOH HOH X . F 4 HOH 91 2094 91 HOH HOH X . F 4 HOH 92 2095 92 HOH HOH X . F 4 HOH 93 2096 93 HOH HOH X . F 4 HOH 94 2097 94 HOH HOH X . F 4 HOH 95 2098 95 HOH HOH X . F 4 HOH 96 2099 96 HOH HOH X . F 4 HOH 97 2100 97 HOH HOH X . F 4 HOH 98 2101 98 HOH HOH X . F 4 HOH 99 2102 99 HOH HOH X . F 4 HOH 100 2103 100 HOH HOH X . F 4 HOH 101 2104 101 HOH HOH X . F 4 HOH 102 2105 102 HOH HOH X . F 4 HOH 103 2106 103 HOH HOH X . F 4 HOH 104 2107 104 HOH HOH X . F 4 HOH 105 2108 105 HOH HOH X . F 4 HOH 106 2109 106 HOH HOH X . F 4 HOH 107 2110 107 HOH HOH X . F 4 HOH 108 2111 108 HOH HOH X . F 4 HOH 109 2112 109 HOH HOH X . F 4 HOH 110 2113 110 HOH HOH X . F 4 HOH 111 2114 111 HOH HOH X . F 4 HOH 112 2115 112 HOH HOH X . F 4 HOH 113 2116 113 HOH HOH X . F 4 HOH 114 2117 114 HOH HOH X . F 4 HOH 115 2118 115 HOH HOH X . F 4 HOH 116 2119 116 HOH HOH X . F 4 HOH 117 2120 117 HOH HOH X . F 4 HOH 118 2121 118 HOH HOH X . F 4 HOH 119 2122 119 HOH HOH X . F 4 HOH 120 2123 120 HOH HOH X . F 4 HOH 121 2124 121 HOH HOH X . F 4 HOH 122 2125 122 HOH HOH X . F 4 HOH 123 2126 123 HOH HOH X . F 4 HOH 124 2127 124 HOH HOH X . F 4 HOH 125 2128 125 HOH HOH X . F 4 HOH 126 2129 126 HOH HOH X . F 4 HOH 127 2130 127 HOH HOH X . F 4 HOH 128 2131 128 HOH HOH X . F 4 HOH 129 2132 129 HOH HOH X . F 4 HOH 130 2133 130 HOH HOH X . F 4 HOH 131 2134 131 HOH HOH X . F 4 HOH 132 2135 132 HOH HOH X . F 4 HOH 133 2136 133 HOH HOH X . F 4 HOH 134 2137 134 HOH HOH X . F 4 HOH 135 2138 135 HOH HOH X . F 4 HOH 136 2139 136 HOH HOH X . F 4 HOH 137 2140 137 HOH HOH X . F 4 HOH 138 2141 138 HOH HOH X . F 4 HOH 139 2142 139 HOH HOH X . F 4 HOH 140 2143 140 HOH HOH X . F 4 HOH 141 2144 141 HOH HOH X . F 4 HOH 142 2145 142 HOH HOH X . F 4 HOH 143 2146 143 HOH HOH X . F 4 HOH 144 2147 144 HOH HOH X . F 4 HOH 145 2148 145 HOH HOH X . F 4 HOH 146 2149 146 HOH HOH X . F 4 HOH 147 2150 147 HOH HOH X . F 4 HOH 148 2151 148 HOH HOH X . F 4 HOH 149 2152 149 HOH HOH X . F 4 HOH 150 2153 150 HOH HOH X . F 4 HOH 151 2154 151 HOH HOH X . F 4 HOH 152 2155 152 HOH HOH X . F 4 HOH 153 2156 153 HOH HOH X . F 4 HOH 154 2157 154 HOH HOH X . F 4 HOH 155 2158 155 HOH HOH X . F 4 HOH 156 2159 156 HOH HOH X . F 4 HOH 157 2160 157 HOH HOH X . F 4 HOH 158 2161 158 HOH HOH X . F 4 HOH 159 2162 159 HOH HOH X . F 4 HOH 160 2163 160 HOH HOH X . F 4 HOH 161 2164 161 HOH HOH X . F 4 HOH 162 2165 162 HOH HOH X . F 4 HOH 163 2166 163 HOH HOH X . F 4 HOH 164 2167 164 HOH HOH X . F 4 HOH 165 2168 165 HOH HOH X . F 4 HOH 166 2169 166 HOH HOH X . F 4 HOH 167 2170 167 HOH HOH X . F 4 HOH 168 2171 168 HOH HOH X . F 4 HOH 169 2172 169 HOH HOH X . F 4 HOH 170 2173 170 HOH HOH X . F 4 HOH 171 2174 171 HOH HOH X . F 4 HOH 172 2175 172 HOH HOH X . F 4 HOH 173 2176 173 HOH HOH X . F 4 HOH 174 2177 174 HOH HOH X . F 4 HOH 175 2178 175 HOH HOH X . F 4 HOH 176 2179 176 HOH HOH X . F 4 HOH 177 2180 177 HOH HOH X . F 4 HOH 178 2181 178 HOH HOH X . F 4 HOH 179 2182 179 HOH HOH X . F 4 HOH 180 2183 180 HOH HOH X . F 4 HOH 181 2184 181 HOH HOH X . F 4 HOH 182 2185 182 HOH HOH X . F 4 HOH 183 2186 183 HOH HOH X . F 4 HOH 184 2187 184 HOH HOH X . F 4 HOH 185 2188 185 HOH HOH X . F 4 HOH 186 2189 186 HOH HOH X . F 4 HOH 187 2190 187 HOH HOH X . F 4 HOH 188 2191 188 HOH HOH X . F 4 HOH 189 2192 189 HOH HOH X . F 4 HOH 190 2193 190 HOH HOH X . F 4 HOH 191 2194 191 HOH HOH X . F 4 HOH 192 2195 192 HOH HOH X . F 4 HOH 193 2196 193 HOH HOH X . F 4 HOH 194 2197 194 HOH HOH X . F 4 HOH 195 2198 195 HOH HOH X . F 4 HOH 196 2199 196 HOH HOH X . F 4 HOH 197 2200 197 HOH HOH X . F 4 HOH 198 2201 198 HOH HOH X . F 4 HOH 199 2202 199 HOH HOH X . F 4 HOH 200 2203 200 HOH HOH X . F 4 HOH 201 2204 201 HOH HOH X . F 4 HOH 202 2205 202 HOH HOH X . F 4 HOH 203 2206 203 HOH HOH X . F 4 HOH 204 2207 204 HOH HOH X . F 4 HOH 205 2208 205 HOH HOH X . F 4 HOH 206 2209 206 HOH HOH X . F 4 HOH 207 2210 207 HOH HOH X . F 4 HOH 208 2211 208 HOH HOH X . F 4 HOH 209 2212 209 HOH HOH X . F 4 HOH 210 2213 210 HOH HOH X . F 4 HOH 211 2214 211 HOH HOH X . F 4 HOH 212 2215 212 HOH HOH X . F 4 HOH 213 2216 213 HOH HOH X . F 4 HOH 214 2217 214 HOH HOH X . F 4 HOH 215 2218 215 HOH HOH X . F 4 HOH 216 2219 216 HOH HOH X . F 4 HOH 217 2220 217 HOH HOH X . F 4 HOH 218 2221 218 HOH HOH X . F 4 HOH 219 2222 219 HOH HOH X . F 4 HOH 220 2223 220 HOH HOH X . F 4 HOH 221 2224 221 HOH HOH X . F 4 HOH 222 2225 222 HOH HOH X . F 4 HOH 223 2226 223 HOH HOH X . F 4 HOH 224 2227 224 HOH HOH X . F 4 HOH 225 2228 225 HOH HOH X . F 4 HOH 226 2229 226 HOH HOH X . F 4 HOH 227 2230 227 HOH HOH X . F 4 HOH 228 2231 228 HOH HOH X . F 4 HOH 229 2232 229 HOH HOH X . F 4 HOH 230 2233 230 HOH HOH X . F 4 HOH 231 2234 231 HOH HOH X . F 4 HOH 232 2235 232 HOH HOH X . F 4 HOH 233 2236 233 HOH HOH X . F 4 HOH 234 2237 234 HOH HOH X . F 4 HOH 235 2238 235 HOH HOH X . F 4 HOH 236 2239 236 HOH HOH X . F 4 HOH 237 2240 237 HOH HOH X . F 4 HOH 238 2241 238 HOH HOH X . F 4 HOH 239 2242 239 HOH HOH X . F 4 HOH 240 2243 240 HOH HOH X . F 4 HOH 241 2244 241 HOH HOH X . F 4 HOH 242 2245 242 HOH HOH X . F 4 HOH 243 2246 243 HOH HOH X . F 4 HOH 244 2247 244 HOH HOH X . F 4 HOH 245 2248 245 HOH HOH X . F 4 HOH 246 2249 246 HOH HOH X . F 4 HOH 247 2250 247 HOH HOH X . F 4 HOH 248 2251 248 HOH HOH X . F 4 HOH 249 2252 249 HOH HOH X . F 4 HOH 250 2253 250 HOH HOH X . F 4 HOH 251 2254 251 HOH HOH X . F 4 HOH 252 2255 252 HOH HOH X . F 4 HOH 253 2256 253 HOH HOH X . F 4 HOH 254 2257 254 HOH HOH X . F 4 HOH 255 2258 255 HOH HOH X . F 4 HOH 256 2259 256 HOH HOH X . F 4 HOH 257 2260 257 HOH HOH X . F 4 HOH 258 2261 258 HOH HOH X . F 4 HOH 259 2262 259 HOH HOH X . F 4 HOH 260 2263 260 HOH HOH X . F 4 HOH 261 2264 261 HOH HOH X . F 4 HOH 262 2265 262 HOH HOH X . F 4 HOH 263 2266 263 HOH HOH X . F 4 HOH 264 2267 264 HOH HOH X . F 4 HOH 265 2268 265 HOH HOH X . F 4 HOH 266 2269 266 HOH HOH X . F 4 HOH 267 2270 267 HOH HOH X . F 4 HOH 268 2271 268 HOH HOH X . F 4 HOH 269 2272 269 HOH HOH X . F 4 HOH 270 2273 270 HOH HOH X . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-18 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2021-10-20 5 'Structure model' 1 4 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 3 'Structure model' software 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 REFMAC . ? ? ? ? phasing ? ? ? 5 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 X LYS 16 ? CE ? A LYS 16 CE 2 1 Y 1 X LYS 16 ? NZ ? A LYS 16 NZ 3 1 Y 1 X LYS 60 ? NZ ? A LYS 60 NZ 4 1 Y 1 X LYS 83 ? CD ? A LYS 83 CD 5 1 Y 1 X LYS 83 ? CE ? A LYS 83 CE 6 1 Y 1 X LYS 83 ? NZ ? A LYS 83 NZ 7 1 Y 0 X LYS 135 ? NZ ? A LYS 135 NZ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 259 CAA C N N 1 259 SAH S N N 2 259 CAI C Y N 3 259 CAD C Y N 4 259 CAF C Y N 5 259 CAJ C Y N 6 259 NAK N N N 7 259 OAC O N N 8 259 OAB O N N 9 259 CAG C Y N 10 259 CAE C Y N 11 259 HAA1 H N N 12 259 HAA2 H N N 13 259 HAA3 H N N 14 259 HAD H N N 15 259 HAF H N N 16 259 HAG H N N 17 259 HAE H N N 18 ALA N N N N 19 ALA CA C N S 20 ALA C C N N 21 ALA O O N N 22 ALA CB C N N 23 ALA OXT O N N 24 ALA H H N N 25 ALA H2 H N N 26 ALA HA H N N 27 ALA HB1 H N N 28 ALA HB2 H N N 29 ALA HB3 H N N 30 ALA HXT H N N 31 ARG N N N N 32 ARG CA C N S 33 ARG C C N N 34 ARG O O N N 35 ARG CB C N N 36 ARG CG C N N 37 ARG CD C N N 38 ARG NE N N N 39 ARG CZ C N N 40 ARG NH1 N N N 41 ARG NH2 N N N 42 ARG OXT O N N 43 ARG H H N N 44 ARG H2 H N N 45 ARG HA H N N 46 ARG HB2 H N N 47 ARG HB3 H N N 48 ARG HG2 H N N 49 ARG HG3 H N N 50 ARG HD2 H N N 51 ARG HD3 H N N 52 ARG HE H N N 53 ARG HH11 H N N 54 ARG HH12 H N N 55 ARG HH21 H N N 56 ARG HH22 H N N 57 ARG HXT H N N 58 ASN N N N N 59 ASN CA C N S 60 ASN C C N N 61 ASN O O N N 62 ASN CB C N N 63 ASN CG C N N 64 ASN OD1 O N N 65 ASN ND2 N N N 66 ASN OXT O N N 67 ASN H H N N 68 ASN H2 H N N 69 ASN HA H N N 70 ASN HB2 H N N 71 ASN HB3 H N N 72 ASN HD21 H N N 73 ASN HD22 H N N 74 ASN HXT H N N 75 ASP N N N N 76 ASP CA C N S 77 ASP C C N N 78 ASP O O N N 79 ASP CB C N N 80 ASP CG C N N 81 ASP OD1 O N N 82 ASP OD2 O N N 83 ASP OXT O N N 84 ASP H H N N 85 ASP H2 H N N 86 ASP HA H N N 87 ASP HB2 H N N 88 ASP HB3 H N N 89 ASP HD2 H N N 90 ASP HXT H N N 91 CYS N N N N 92 CYS CA C N R 93 CYS C C N N 94 CYS O O N N 95 CYS CB C N N 96 CYS SG S N N 97 CYS OXT O N N 98 CYS H H N N 99 CYS H2 H N N 100 CYS HA H N N 101 CYS HB2 H N N 102 CYS HB3 H N N 103 CYS HG H N N 104 CYS HXT H N N 105 GLN N N N N 106 GLN CA C N S 107 GLN C C N N 108 GLN O O N N 109 GLN CB C N N 110 GLN CG C N N 111 GLN CD C N N 112 GLN OE1 O N N 113 GLN NE2 N N N 114 GLN OXT O N N 115 GLN H H N N 116 GLN H2 H N N 117 GLN HA H N N 118 GLN HB2 H N N 119 GLN HB3 H N N 120 GLN HG2 H N N 121 GLN HG3 H N N 122 GLN HE21 H N N 123 GLN HE22 H N N 124 GLN HXT H N N 125 GLU N N N N 126 GLU CA C N S 127 GLU C C N N 128 GLU O O N N 129 GLU CB C N N 130 GLU CG C N N 131 GLU CD C N N 132 GLU OE1 O N N 133 GLU OE2 O N N 134 GLU OXT O N N 135 GLU H H N N 136 GLU H2 H N N 137 GLU HA H N N 138 GLU HB2 H N N 139 GLU HB3 H N N 140 GLU HG2 H N N 141 GLU HG3 H N N 142 GLU HE2 H N N 143 GLU HXT H N N 144 GLY N N N N 145 GLY CA C N N 146 GLY C C N N 147 GLY O O N N 148 GLY OXT O N N 149 GLY H H N N 150 GLY H2 H N N 151 GLY HA2 H N N 152 GLY HA3 H N N 153 GLY HXT H N N 154 HIS N N N N 155 HIS CA C N S 156 HIS C C N N 157 HIS O O N N 158 HIS CB C N N 159 HIS CG C Y N 160 HIS ND1 N Y N 161 HIS CD2 C Y N 162 HIS CE1 C Y N 163 HIS NE2 N Y N 164 HIS OXT O N N 165 HIS H H N N 166 HIS H2 H N N 167 HIS HA H N N 168 HIS HB2 H N N 169 HIS HB3 H N N 170 HIS HD1 H N N 171 HIS HD2 H N N 172 HIS HE1 H N N 173 HIS HE2 H N N 174 HIS HXT H N N 175 HOH O O N N 176 HOH H1 H N N 177 HOH H2 H N N 178 ILE N N N N 179 ILE CA C N S 180 ILE C C N N 181 ILE O O N N 182 ILE CB C N S 183 ILE CG1 C N N 184 ILE CG2 C N N 185 ILE CD1 C N N 186 ILE OXT O N N 187 ILE H H N N 188 ILE H2 H N N 189 ILE HA H N N 190 ILE HB H N N 191 ILE HG12 H N N 192 ILE HG13 H N N 193 ILE HG21 H N N 194 ILE HG22 H N N 195 ILE HG23 H N N 196 ILE HD11 H N N 197 ILE HD12 H N N 198 ILE HD13 H N N 199 ILE HXT H N N 200 LEU N N N N 201 LEU CA C N S 202 LEU C C N N 203 LEU O O N N 204 LEU CB C N N 205 LEU CG C N N 206 LEU CD1 C N N 207 LEU CD2 C N N 208 LEU OXT O N N 209 LEU H H N N 210 LEU H2 H N N 211 LEU HA H N N 212 LEU HB2 H N N 213 LEU HB3 H N N 214 LEU HG H N N 215 LEU HD11 H N N 216 LEU HD12 H N N 217 LEU HD13 H N N 218 LEU HD21 H N N 219 LEU HD22 H N N 220 LEU HD23 H N N 221 LEU HXT H N N 222 LYS N N N N 223 LYS CA C N S 224 LYS C C N N 225 LYS O O N N 226 LYS CB C N N 227 LYS CG C N N 228 LYS CD C N N 229 LYS CE C N N 230 LYS NZ N N N 231 LYS OXT O N N 232 LYS H H N N 233 LYS H2 H N N 234 LYS HA H N N 235 LYS HB2 H N N 236 LYS HB3 H N N 237 LYS HG2 H N N 238 LYS HG3 H N N 239 LYS HD2 H N N 240 LYS HD3 H N N 241 LYS HE2 H N N 242 LYS HE3 H N N 243 LYS HZ1 H N N 244 LYS HZ2 H N N 245 LYS HZ3 H N N 246 LYS HXT H N N 247 MET N N N N 248 MET CA C N S 249 MET C C N N 250 MET O O N N 251 MET CB C N N 252 MET CG C N N 253 MET SD S N N 254 MET CE C N N 255 MET OXT O N N 256 MET H H N N 257 MET H2 H N N 258 MET HA H N N 259 MET HB2 H N N 260 MET HB3 H N N 261 MET HG2 H N N 262 MET HG3 H N N 263 MET HE1 H N N 264 MET HE2 H N N 265 MET HE3 H N N 266 MET HXT H N N 267 PHE N N N N 268 PHE CA C N S 269 PHE C C N N 270 PHE O O N N 271 PHE CB C N N 272 PHE CG C Y N 273 PHE CD1 C Y N 274 PHE CD2 C Y N 275 PHE CE1 C Y N 276 PHE CE2 C Y N 277 PHE CZ C Y N 278 PHE OXT O N N 279 PHE H H N N 280 PHE H2 H N N 281 PHE HA H N N 282 PHE HB2 H N N 283 PHE HB3 H N N 284 PHE HD1 H N N 285 PHE HD2 H N N 286 PHE HE1 H N N 287 PHE HE2 H N N 288 PHE HZ H N N 289 PHE HXT H N N 290 PO4 P P N N 291 PO4 O1 O N N 292 PO4 O2 O N N 293 PO4 O3 O N N 294 PO4 O4 O N N 295 PRO N N N N 296 PRO CA C N S 297 PRO C C N N 298 PRO O O N N 299 PRO CB C N N 300 PRO CG C N N 301 PRO CD C N N 302 PRO OXT O N N 303 PRO H H N N 304 PRO HA H N N 305 PRO HB2 H N N 306 PRO HB3 H N N 307 PRO HG2 H N N 308 PRO HG3 H N N 309 PRO HD2 H N N 310 PRO HD3 H N N 311 PRO HXT H N N 312 SER N N N N 313 SER CA C N S 314 SER C C N N 315 SER O O N N 316 SER CB C N N 317 SER OG O N N 318 SER OXT O N N 319 SER H H N N 320 SER H2 H N N 321 SER HA H N N 322 SER HB2 H N N 323 SER HB3 H N N 324 SER HG H N N 325 SER HXT H N N 326 THR N N N N 327 THR CA C N S 328 THR C C N N 329 THR O O N N 330 THR CB C N R 331 THR OG1 O N N 332 THR CG2 C N N 333 THR OXT O N N 334 THR H H N N 335 THR H2 H N N 336 THR HA H N N 337 THR HB H N N 338 THR HG1 H N N 339 THR HG21 H N N 340 THR HG22 H N N 341 THR HG23 H N N 342 THR HXT H N N 343 TRP N N N N 344 TRP CA C N S 345 TRP C C N N 346 TRP O O N N 347 TRP CB C N N 348 TRP CG C Y N 349 TRP CD1 C Y N 350 TRP CD2 C Y N 351 TRP NE1 N Y N 352 TRP CE2 C Y N 353 TRP CE3 C Y N 354 TRP CZ2 C Y N 355 TRP CZ3 C Y N 356 TRP CH2 C Y N 357 TRP OXT O N N 358 TRP H H N N 359 TRP H2 H N N 360 TRP HA H N N 361 TRP HB2 H N N 362 TRP HB3 H N N 363 TRP HD1 H N N 364 TRP HE1 H N N 365 TRP HE3 H N N 366 TRP HZ2 H N N 367 TRP HZ3 H N N 368 TRP HH2 H N N 369 TRP HXT H N N 370 TYR N N N N 371 TYR CA C N S 372 TYR C C N N 373 TYR O O N N 374 TYR CB C N N 375 TYR CG C Y N 376 TYR CD1 C Y N 377 TYR CD2 C Y N 378 TYR CE1 C Y N 379 TYR CE2 C Y N 380 TYR CZ C Y N 381 TYR OH O N N 382 TYR OXT O N N 383 TYR H H N N 384 TYR H2 H N N 385 TYR HA H N N 386 TYR HB2 H N N 387 TYR HB3 H N N 388 TYR HD1 H N N 389 TYR HD2 H N N 390 TYR HE1 H N N 391 TYR HE2 H N N 392 TYR HH H N N 393 TYR HXT H N N 394 VAL N N N N 395 VAL CA C N S 396 VAL C C N N 397 VAL O O N N 398 VAL CB C N N 399 VAL CG1 C N N 400 VAL CG2 C N N 401 VAL OXT O N N 402 VAL H H N N 403 VAL H2 H N N 404 VAL HA H N N 405 VAL HB H N N 406 VAL HG11 H N N 407 VAL HG12 H N N 408 VAL HG13 H N N 409 VAL HG21 H N N 410 VAL HG22 H N N 411 VAL HG23 H N N 412 VAL HXT H N N 413 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 259 CAA SAH sing N N 1 259 SAH CAI sing N N 2 259 CAI CAD doub Y N 3 259 CAI CAE sing Y N 4 259 CAD CAF sing Y N 5 259 CAF CAJ doub Y N 6 259 CAJ NAK sing N N 7 259 CAJ CAG sing Y N 8 259 NAK OAC sing N N 9 259 NAK OAB doub N N 10 259 CAG CAE doub Y N 11 259 CAA HAA1 sing N N 12 259 CAA HAA2 sing N N 13 259 CAA HAA3 sing N N 14 259 CAD HAD sing N N 15 259 CAF HAF sing N N 16 259 CAG HAG sing N N 17 259 CAE HAE sing N N 18 ALA N CA sing N N 19 ALA N H sing N N 20 ALA N H2 sing N N 21 ALA CA C sing N N 22 ALA CA CB sing N N 23 ALA CA HA sing N N 24 ALA C O doub N N 25 ALA C OXT sing N N 26 ALA CB HB1 sing N N 27 ALA CB HB2 sing N N 28 ALA CB HB3 sing N N 29 ALA OXT HXT sing N N 30 ARG N CA sing N N 31 ARG N H sing N N 32 ARG N H2 sing N N 33 ARG CA C sing N N 34 ARG CA CB sing N N 35 ARG CA HA sing N N 36 ARG C O doub N N 37 ARG C OXT sing N N 38 ARG CB CG sing N N 39 ARG CB HB2 sing N N 40 ARG CB HB3 sing N N 41 ARG CG CD sing N N 42 ARG CG HG2 sing N N 43 ARG CG HG3 sing N N 44 ARG CD NE sing N N 45 ARG CD HD2 sing N N 46 ARG CD HD3 sing N N 47 ARG NE CZ sing N N 48 ARG NE HE sing N N 49 ARG CZ NH1 sing N N 50 ARG CZ NH2 doub N N 51 ARG NH1 HH11 sing N N 52 ARG NH1 HH12 sing N N 53 ARG NH2 HH21 sing N N 54 ARG NH2 HH22 sing N N 55 ARG OXT HXT sing N N 56 ASN N CA sing N N 57 ASN N H sing N N 58 ASN N H2 sing N N 59 ASN CA C sing N N 60 ASN CA CB sing N N 61 ASN CA HA sing N N 62 ASN C O doub N N 63 ASN C OXT sing N N 64 ASN CB CG sing N N 65 ASN CB HB2 sing N N 66 ASN CB HB3 sing N N 67 ASN CG OD1 doub N N 68 ASN CG ND2 sing N N 69 ASN ND2 HD21 sing N N 70 ASN ND2 HD22 sing N N 71 ASN OXT HXT sing N N 72 ASP N CA sing N N 73 ASP N H sing N N 74 ASP N H2 sing N N 75 ASP CA C sing N N 76 ASP CA CB sing N N 77 ASP CA HA sing N N 78 ASP C O doub N N 79 ASP C OXT sing N N 80 ASP CB CG sing N N 81 ASP CB HB2 sing N N 82 ASP CB HB3 sing N N 83 ASP CG OD1 doub N N 84 ASP CG OD2 sing N N 85 ASP OD2 HD2 sing N N 86 ASP OXT HXT sing N N 87 CYS N CA sing N N 88 CYS N H sing N N 89 CYS N H2 sing N N 90 CYS CA C sing N N 91 CYS CA CB sing N N 92 CYS CA HA sing N N 93 CYS C O doub N N 94 CYS C OXT sing N N 95 CYS CB SG sing N N 96 CYS CB HB2 sing N N 97 CYS CB HB3 sing N N 98 CYS SG HG sing N N 99 CYS OXT HXT sing N N 100 GLN N CA sing N N 101 GLN N H sing N N 102 GLN N H2 sing N N 103 GLN CA C sing N N 104 GLN CA CB sing N N 105 GLN CA HA sing N N 106 GLN C O doub N N 107 GLN C OXT sing N N 108 GLN CB CG sing N N 109 GLN CB HB2 sing N N 110 GLN CB HB3 sing N N 111 GLN CG CD sing N N 112 GLN CG HG2 sing N N 113 GLN CG HG3 sing N N 114 GLN CD OE1 doub N N 115 GLN CD NE2 sing N N 116 GLN NE2 HE21 sing N N 117 GLN NE2 HE22 sing N N 118 GLN OXT HXT sing N N 119 GLU N CA sing N N 120 GLU N H sing N N 121 GLU N H2 sing N N 122 GLU CA C sing N N 123 GLU CA CB sing N N 124 GLU CA HA sing N N 125 GLU C O doub N N 126 GLU C OXT sing N N 127 GLU CB CG sing N N 128 GLU CB HB2 sing N N 129 GLU CB HB3 sing N N 130 GLU CG CD sing N N 131 GLU CG HG2 sing N N 132 GLU CG HG3 sing N N 133 GLU CD OE1 doub N N 134 GLU CD OE2 sing N N 135 GLU OE2 HE2 sing N N 136 GLU OXT HXT sing N N 137 GLY N CA sing N N 138 GLY N H sing N N 139 GLY N H2 sing N N 140 GLY CA C sing N N 141 GLY CA HA2 sing N N 142 GLY CA HA3 sing N N 143 GLY C O doub N N 144 GLY C OXT sing N N 145 GLY OXT HXT sing N N 146 HIS N CA sing N N 147 HIS N H sing N N 148 HIS N H2 sing N N 149 HIS CA C sing N N 150 HIS CA CB sing N N 151 HIS CA HA sing N N 152 HIS C O doub N N 153 HIS C OXT sing N N 154 HIS CB CG sing N N 155 HIS CB HB2 sing N N 156 HIS CB HB3 sing N N 157 HIS CG ND1 sing Y N 158 HIS CG CD2 doub Y N 159 HIS ND1 CE1 doub Y N 160 HIS ND1 HD1 sing N N 161 HIS CD2 NE2 sing Y N 162 HIS CD2 HD2 sing N N 163 HIS CE1 NE2 sing Y N 164 HIS CE1 HE1 sing N N 165 HIS NE2 HE2 sing N N 166 HIS OXT HXT sing N N 167 HOH O H1 sing N N 168 HOH O H2 sing N N 169 ILE N CA sing N N 170 ILE N H sing N N 171 ILE N H2 sing N N 172 ILE CA C sing N N 173 ILE CA CB sing N N 174 ILE CA HA sing N N 175 ILE C O doub N N 176 ILE C OXT sing N N 177 ILE CB CG1 sing N N 178 ILE CB CG2 sing N N 179 ILE CB HB sing N N 180 ILE CG1 CD1 sing N N 181 ILE CG1 HG12 sing N N 182 ILE CG1 HG13 sing N N 183 ILE CG2 HG21 sing N N 184 ILE CG2 HG22 sing N N 185 ILE CG2 HG23 sing N N 186 ILE CD1 HD11 sing N N 187 ILE CD1 HD12 sing N N 188 ILE CD1 HD13 sing N N 189 ILE OXT HXT sing N N 190 LEU N CA sing N N 191 LEU N H sing N N 192 LEU N H2 sing N N 193 LEU CA C sing N N 194 LEU CA CB sing N N 195 LEU CA HA sing N N 196 LEU C O doub N N 197 LEU C OXT sing N N 198 LEU CB CG sing N N 199 LEU CB HB2 sing N N 200 LEU CB HB3 sing N N 201 LEU CG CD1 sing N N 202 LEU CG CD2 sing N N 203 LEU CG HG sing N N 204 LEU CD1 HD11 sing N N 205 LEU CD1 HD12 sing N N 206 LEU CD1 HD13 sing N N 207 LEU CD2 HD21 sing N N 208 LEU CD2 HD22 sing N N 209 LEU CD2 HD23 sing N N 210 LEU OXT HXT sing N N 211 LYS N CA sing N N 212 LYS N H sing N N 213 LYS N H2 sing N N 214 LYS CA C sing N N 215 LYS CA CB sing N N 216 LYS CA HA sing N N 217 LYS C O doub N N 218 LYS C OXT sing N N 219 LYS CB CG sing N N 220 LYS CB HB2 sing N N 221 LYS CB HB3 sing N N 222 LYS CG CD sing N N 223 LYS CG HG2 sing N N 224 LYS CG HG3 sing N N 225 LYS CD CE sing N N 226 LYS CD HD2 sing N N 227 LYS CD HD3 sing N N 228 LYS CE NZ sing N N 229 LYS CE HE2 sing N N 230 LYS CE HE3 sing N N 231 LYS NZ HZ1 sing N N 232 LYS NZ HZ2 sing N N 233 LYS NZ HZ3 sing N N 234 LYS OXT HXT sing N N 235 MET N CA sing N N 236 MET N H sing N N 237 MET N H2 sing N N 238 MET CA C sing N N 239 MET CA CB sing N N 240 MET CA HA sing N N 241 MET C O doub N N 242 MET C OXT sing N N 243 MET CB CG sing N N 244 MET CB HB2 sing N N 245 MET CB HB3 sing N N 246 MET CG SD sing N N 247 MET CG HG2 sing N N 248 MET CG HG3 sing N N 249 MET SD CE sing N N 250 MET CE HE1 sing N N 251 MET CE HE2 sing N N 252 MET CE HE3 sing N N 253 MET OXT HXT sing N N 254 PHE N CA sing N N 255 PHE N H sing N N 256 PHE N H2 sing N N 257 PHE CA C sing N N 258 PHE CA CB sing N N 259 PHE CA HA sing N N 260 PHE C O doub N N 261 PHE C OXT sing N N 262 PHE CB CG sing N N 263 PHE CB HB2 sing N N 264 PHE CB HB3 sing N N 265 PHE CG CD1 doub Y N 266 PHE CG CD2 sing Y N 267 PHE CD1 CE1 sing Y N 268 PHE CD1 HD1 sing N N 269 PHE CD2 CE2 doub Y N 270 PHE CD2 HD2 sing N N 271 PHE CE1 CZ doub Y N 272 PHE CE1 HE1 sing N N 273 PHE CE2 CZ sing Y N 274 PHE CE2 HE2 sing N N 275 PHE CZ HZ sing N N 276 PHE OXT HXT sing N N 277 PO4 P O1 doub N N 278 PO4 P O2 sing N N 279 PO4 P O3 sing N N 280 PO4 P O4 sing N N 281 PRO N CA sing N N 282 PRO N CD sing N N 283 PRO N H sing N N 284 PRO CA C sing N N 285 PRO CA CB sing N N 286 PRO CA HA sing N N 287 PRO C O doub N N 288 PRO C OXT sing N N 289 PRO CB CG sing N N 290 PRO CB HB2 sing N N 291 PRO CB HB3 sing N N 292 PRO CG CD sing N N 293 PRO CG HG2 sing N N 294 PRO CG HG3 sing N N 295 PRO CD HD2 sing N N 296 PRO CD HD3 sing N N 297 PRO OXT HXT sing N N 298 SER N CA sing N N 299 SER N H sing N N 300 SER N H2 sing N N 301 SER CA C sing N N 302 SER CA CB sing N N 303 SER CA HA sing N N 304 SER C O doub N N 305 SER C OXT sing N N 306 SER CB OG sing N N 307 SER CB HB2 sing N N 308 SER CB HB3 sing N N 309 SER OG HG sing N N 310 SER OXT HXT sing N N 311 THR N CA sing N N 312 THR N H sing N N 313 THR N H2 sing N N 314 THR CA C sing N N 315 THR CA CB sing N N 316 THR CA HA sing N N 317 THR C O doub N N 318 THR C OXT sing N N 319 THR CB OG1 sing N N 320 THR CB CG2 sing N N 321 THR CB HB sing N N 322 THR OG1 HG1 sing N N 323 THR CG2 HG21 sing N N 324 THR CG2 HG22 sing N N 325 THR CG2 HG23 sing N N 326 THR OXT HXT sing N N 327 TRP N CA sing N N 328 TRP N H sing N N 329 TRP N H2 sing N N 330 TRP CA C sing N N 331 TRP CA CB sing N N 332 TRP CA HA sing N N 333 TRP C O doub N N 334 TRP C OXT sing N N 335 TRP CB CG sing N N 336 TRP CB HB2 sing N N 337 TRP CB HB3 sing N N 338 TRP CG CD1 doub Y N 339 TRP CG CD2 sing Y N 340 TRP CD1 NE1 sing Y N 341 TRP CD1 HD1 sing N N 342 TRP CD2 CE2 doub Y N 343 TRP CD2 CE3 sing Y N 344 TRP NE1 CE2 sing Y N 345 TRP NE1 HE1 sing N N 346 TRP CE2 CZ2 sing Y N 347 TRP CE3 CZ3 doub Y N 348 TRP CE3 HE3 sing N N 349 TRP CZ2 CH2 doub Y N 350 TRP CZ2 HZ2 sing N N 351 TRP CZ3 CH2 sing Y N 352 TRP CZ3 HZ3 sing N N 353 TRP CH2 HH2 sing N N 354 TRP OXT HXT sing N N 355 TYR N CA sing N N 356 TYR N H sing N N 357 TYR N H2 sing N N 358 TYR CA C sing N N 359 TYR CA CB sing N N 360 TYR CA HA sing N N 361 TYR C O doub N N 362 TYR C OXT sing N N 363 TYR CB CG sing N N 364 TYR CB HB2 sing N N 365 TYR CB HB3 sing N N 366 TYR CG CD1 doub Y N 367 TYR CG CD2 sing Y N 368 TYR CD1 CE1 sing Y N 369 TYR CD1 HD1 sing N N 370 TYR CD2 CE2 doub Y N 371 TYR CD2 HD2 sing N N 372 TYR CE1 CZ doub Y N 373 TYR CE1 HE1 sing N N 374 TYR CE2 CZ sing Y N 375 TYR CE2 HE2 sing N N 376 TYR CZ OH sing N N 377 TYR OH HH sing N N 378 TYR OXT HXT sing N N 379 VAL N CA sing N N 380 VAL N H sing N N 381 VAL N H2 sing N N 382 VAL CA C sing N N 383 VAL CA CB sing N N 384 VAL CA HA sing N N 385 VAL C O doub N N 386 VAL C OXT sing N N 387 VAL CB CG1 sing N N 388 VAL CB CG2 sing N N 389 VAL CB HB sing N N 390 VAL CG1 HG11 sing N N 391 VAL CG1 HG12 sing N N 392 VAL CG1 HG13 sing N N 393 VAL CG2 HG21 sing N N 394 VAL CG2 HG22 sing N N 395 VAL CG2 HG23 sing N N 396 VAL OXT HXT sing N N 397 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 '1-(methylsulfanyl)-4-nitrobenzene' 259 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 184L _pdbx_initial_refinement_model.details ? #