HEADER HYDROLASE 21-SEP-07 2RD3 TITLE CRYSTAL STRUCTURE OF TENA HOMOLOGUE (HP1287) FROM HELICOBACTER PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: TENA; COMPND 5 EC: 3.5.99.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_COMMON: CAMPYLOBACTER PYLORI; SOURCE 4 STRAIN: CCUG17874; SOURCE 5 GENE: HP1287; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET151 DIRECTIONAL TOPO KEYWDS TENA, HP1287, HELICOBACTER PYLORI, THIAMIN, VITAMIN B1, THIAMINASE KEYWDS 2 II, TRANSCRIPTION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.BARISON,L.CENDRON,A.TRENTO,A.ANGELINI,G.ZANOTTI REVDAT 4 30-AUG-23 2RD3 1 SEQADV REVDAT 3 31-JAN-18 2RD3 1 JRNL REVDAT 2 24-FEB-09 2RD3 1 VERSN REVDAT 1 30-SEP-08 2RD3 0 JRNL AUTH N.BARISON,L.CENDRON,A.TRENTO,A.ANGELINI,G.ZANOTTI JRNL TITL THE STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF HP1287 JRNL TITL 2 FROM HELICOBACTER PYLORI DEMONSTRATES IT IS A TENA HOMOLOGUE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.V.TOMS,A.L.HAAS,J.H.PARK,T.P.BEGLEY,S.E.EALICK REMARK 1 TITL STRUCTURAL CHARACTERIZATION OF THE REGULATORY PROTEINS TENA REMARK 1 TITL 2 AND TENI FROM BACILLUS SUBTILIS AND IDENTIFICATION OF TENA REMARK 1 TITL 3 AS A THIAMINASE II REMARK 1 REF BIOCHEMISTRY V. 44 2319 2005 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.BENACH,W.C.EDSTROM,I.LEE,K.DAS,B.COOPER,R.XIAO,J.LIU, REMARK 1 AUTH 2 B.ROST,T.B.ACTON,G.T.MONTELIONE,J.F.HUNT REMARK 1 TITL THE 2.35 A STRUCTURE OF THE TENA HOMOLOG FROM PYROCOCCUS REMARK 1 TITL 2 FURIOSUS SUPPORTS AN ENZYMATIC FUNCTION IN THIAMINE REMARK 1 TITL 3 METABOLISM REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 61 589 2005 REMARK 1 REFN ISSN 0907-4449 REMARK 1 REFERENCE 3 REMARK 1 AUTH H.ITOU,M.YAO,N.WATANABE,I.TANAKA REMARK 1 TITL STRUCTURE ANALYSIS OF PH1161 PROTEIN, A TRANSCRIPTIONAL REMARK 1 TITL 2 ACTIVATOR TENA HOMOLOGUE FROM THE HYPERTHERMOPHILIC ARCHAEON REMARK 1 TITL 3 PYROCOCCUS HORIKOSHII REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 1094 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 1 REFERENCE 4 REMARK 1 AUTH A.H.JENKINS,G.SCHYNS,S.POTOT,G.SUN,T.P.BEGLEY REMARK 1 TITL A NEW THIAMIN SALVAGE PATHWAY REMARK 1 REF NAT.CHEM.BIOL. V. 3 492 2007 REMARK 1 REFN ISSN 1552-4450 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 125.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 34257 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1799 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2463 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.3600 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3568 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 52 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.93000 REMARK 3 B22 (A**2) : 0.93000 REMARK 3 B33 (A**2) : -1.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.277 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.230 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.170 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.508 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3654 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4949 ; 1.643 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 437 ; 6.019 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;41.271 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 628 ;21.727 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;19.178 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 533 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2783 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1891 ; 0.279 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2667 ; 0.344 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 264 ; 0.224 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.352 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.351 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2219 ; 1.646 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3507 ; 2.790 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1652 ; 1.484 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1442 ; 2.164 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 217 3 REMARK 3 1 D 2 D 217 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 864 ; 0.05 ; 0.05 REMARK 3 LOOSE POSITIONAL 1 A (A): 892 ; 0.17 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 864 ; 0.81 ; 0.50 REMARK 3 LOOSE THERMAL 1 A (A**2): 892 ; 3.33 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2RD3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044714. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36057 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 125.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.80 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1TO9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, 1.1 M LITHIUM SULPHATE, PH REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 74.21000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 74.21000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.76250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 74.21000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.38125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 74.21000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 175.14375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 74.21000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 175.14375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.21000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.38125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 74.21000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 74.21000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 116.76250 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 74.21000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 74.21000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 116.76250 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 74.21000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 175.14375 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 74.21000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 58.38125 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 74.21000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 58.38125 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 74.21000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 175.14375 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 74.21000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 74.21000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 116.76250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER. THE DIMER IN THE REMARK 300 ASYMMETRIC UNIT GENERATES THE TETRAMER THROUGH ONE OF THE TWO REMARK 300 CRYSTALLOGRAPHIC TWO-FOLD AXES. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7700 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 74.21000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 58.38125 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1630 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 74.21000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 58.38125 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1630 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 74.21000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 58.38125 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 227 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 ILE A -4 REMARK 465 GLY D -5 REMARK 465 ILE D -4 REMARK 465 ASP D -3 REMARK 465 PRO D -2 REMARK 465 PHE D -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR D 215 OH TYR D 215 10765 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 64 117.51 164.82 REMARK 500 MET A 83 15.73 -63.66 REMARK 500 SER A 84 -71.91 -123.96 REMARK 500 LEU A 93 -163.83 -70.79 REMARK 500 LEU A 100 -85.97 -46.13 REMARK 500 GLN A 101 6.39 -58.90 REMARK 500 PRO A 150 -136.68 -91.10 REMARK 500 ASN A 151 -1.70 64.16 REMARK 500 HIS A 155 126.02 -39.05 REMARK 500 ALA A 187 -1.88 174.82 REMARK 500 GLN A 216 -3.85 -49.66 REMARK 500 MET D 1 114.98 163.77 REMARK 500 ASP D 64 119.06 167.95 REMARK 500 MET D 83 17.54 -68.78 REMARK 500 SER D 84 -73.83 -125.00 REMARK 500 LEU D 93 -164.60 -72.22 REMARK 500 LEU D 100 -85.28 -48.53 REMARK 500 GLN D 101 7.52 -62.78 REMARK 500 SER D 124 -169.36 -100.29 REMARK 500 PRO D 150 -139.92 -94.61 REMARK 500 ASN D 151 3.05 59.98 REMARK 500 ALA D 187 -2.89 169.09 REMARK 500 GLN D 216 -8.17 -46.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A -3 PRO A -2 -32.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TO9 RELATED DB: PDB REMARK 900 THI-4 PROTEIN FROM BACILLUS SUBTILIS REMARK 900 RELATED ID: 1RTW RELATED DB: PDB REMARK 900 TENA HOMOLOGUE (PF1337) FROM PYROCOCCUS FURIOSUS REMARK 900 RELATED ID: 1UDD RELATED DB: PDB REMARK 900 TENA HOMOLOGUE FROM P. HORIKOSHII REMARK 900 RELATED ID: 1TYH RELATED DB: PDB REMARK 900 TENA FROM BACILLUS SUBTILIS REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE GENE AUTHOR HAS CLONED COMES FROM A DIFFERENT STRAIN. DBREF 2RD3 A 1 217 UNP O25874 O25874_HELPY 1 217 DBREF 2RD3 D 1 217 UNP O25874 O25874_HELPY 1 217 SEQADV 2RD3 GLY A -5 UNP O25874 EXPRESSION TAG SEQADV 2RD3 ILE A -4 UNP O25874 EXPRESSION TAG SEQADV 2RD3 ASP A -3 UNP O25874 EXPRESSION TAG SEQADV 2RD3 PRO A -2 UNP O25874 EXPRESSION TAG SEQADV 2RD3 PHE A -1 UNP O25874 EXPRESSION TAG SEQADV 2RD3 THR A 0 UNP O25874 EXPRESSION TAG SEQADV 2RD3 ALA A 11 UNP O25874 VAL 11 SEE REMARK 999 SEQADV 2RD3 GLU A 92 UNP O25874 GLY 92 SEE REMARK 999 SEQADV 2RD3 CYS A 104 UNP O25874 ARG 104 SEE REMARK 999 SEQADV 2RD3 ALA A 187 UNP O25874 THR 187 SEE REMARK 999 SEQADV 2RD3 GLU A 198 UNP O25874 ASP 198 SEE REMARK 999 SEQADV 2RD3 GLY D -5 UNP O25874 EXPRESSION TAG SEQADV 2RD3 ILE D -4 UNP O25874 EXPRESSION TAG SEQADV 2RD3 ASP D -3 UNP O25874 EXPRESSION TAG SEQADV 2RD3 PRO D -2 UNP O25874 EXPRESSION TAG SEQADV 2RD3 PHE D -1 UNP O25874 EXPRESSION TAG SEQADV 2RD3 THR D 0 UNP O25874 EXPRESSION TAG SEQADV 2RD3 ALA D 11 UNP O25874 VAL 11 SEE REMARK 999 SEQADV 2RD3 GLU D 92 UNP O25874 GLY 92 SEE REMARK 999 SEQADV 2RD3 CYS D 104 UNP O25874 ARG 104 SEE REMARK 999 SEQADV 2RD3 ALA D 187 UNP O25874 THR 187 SEE REMARK 999 SEQADV 2RD3 GLU D 198 UNP O25874 ASP 198 SEE REMARK 999 SEQRES 1 A 223 GLY ILE ASP PRO PHE THR MET GLN VAL SER GLN TYR LEU SEQRES 2 A 223 TYR GLN ASN ALA GLN SER ILE TRP GLY ASP CYS ILE SER SEQRES 3 A 223 HIS PRO PHE VAL GLN GLY ILE GLY ARG GLY THR LEU GLU SEQRES 4 A 223 ARG ASP LYS PHE ARG PHE TYR ILE ILE GLN ASP TYR LEU SEQRES 5 A 223 PHE LEU LEU GLU TYR ALA LYS VAL PHE ALA LEU GLY VAL SEQRES 6 A 223 VAL LYS ALA CYS ASP GLU ALA VAL MET ARG GLU PHE SER SEQRES 7 A 223 ASN ALA ILE GLN ASP ILE LEU ASN ASN GLU MET SER ILE SEQRES 8 A 223 HIS ASN HIS TYR ILE ARG GLU LEU GLN ILE THR GLN LYS SEQRES 9 A 223 GLU LEU GLN ASN ALA CYS PRO THR LEU ALA ASN LYS SER SEQRES 10 A 223 TYR THR SER TYR MET LEU ALA GLU GLY PHE LYS GLY SER SEQRES 11 A 223 ILE LYS GLU VAL ALA ALA ALA VAL LEU SER CYS GLY TRP SEQRES 12 A 223 SER TYR LEU VAL ILE ALA GLN ASN LEU SER GLN ILE PRO SEQRES 13 A 223 ASN ALA LEU GLU HIS ALA PHE TYR GLY HIS TRP ILE LYS SEQRES 14 A 223 GLY TYR SER SER LYS GLU PHE GLN ALA CYS VAL ASN TRP SEQRES 15 A 223 ASN ILE ASN LEU LEU ASP SER LEU THR LEU ALA SER SER SEQRES 16 A 223 LYS GLN GLU ILE GLU LYS LEU LYS GLU ILE PHE ILE THR SEQRES 17 A 223 THR SER GLU TYR GLU TYR LEU PHE TRP ASP MET ALA TYR SEQRES 18 A 223 GLN SER SEQRES 1 D 223 GLY ILE ASP PRO PHE THR MET GLN VAL SER GLN TYR LEU SEQRES 2 D 223 TYR GLN ASN ALA GLN SER ILE TRP GLY ASP CYS ILE SER SEQRES 3 D 223 HIS PRO PHE VAL GLN GLY ILE GLY ARG GLY THR LEU GLU SEQRES 4 D 223 ARG ASP LYS PHE ARG PHE TYR ILE ILE GLN ASP TYR LEU SEQRES 5 D 223 PHE LEU LEU GLU TYR ALA LYS VAL PHE ALA LEU GLY VAL SEQRES 6 D 223 VAL LYS ALA CYS ASP GLU ALA VAL MET ARG GLU PHE SER SEQRES 7 D 223 ASN ALA ILE GLN ASP ILE LEU ASN ASN GLU MET SER ILE SEQRES 8 D 223 HIS ASN HIS TYR ILE ARG GLU LEU GLN ILE THR GLN LYS SEQRES 9 D 223 GLU LEU GLN ASN ALA CYS PRO THR LEU ALA ASN LYS SER SEQRES 10 D 223 TYR THR SER TYR MET LEU ALA GLU GLY PHE LYS GLY SER SEQRES 11 D 223 ILE LYS GLU VAL ALA ALA ALA VAL LEU SER CYS GLY TRP SEQRES 12 D 223 SER TYR LEU VAL ILE ALA GLN ASN LEU SER GLN ILE PRO SEQRES 13 D 223 ASN ALA LEU GLU HIS ALA PHE TYR GLY HIS TRP ILE LYS SEQRES 14 D 223 GLY TYR SER SER LYS GLU PHE GLN ALA CYS VAL ASN TRP SEQRES 15 D 223 ASN ILE ASN LEU LEU ASP SER LEU THR LEU ALA SER SER SEQRES 16 D 223 LYS GLN GLU ILE GLU LYS LEU LYS GLU ILE PHE ILE THR SEQRES 17 D 223 THR SER GLU TYR GLU TYR LEU PHE TRP ASP MET ALA TYR SEQRES 18 D 223 GLN SER FORMUL 3 HOH *52(H2 O) HELIX 1 1 GLN A 2 SER A 20 1 19 HELIX 2 2 HIS A 21 ARG A 29 1 9 HELIX 3 3 GLU A 33 ALA A 62 1 30 HELIX 4 4 ASP A 64 ASN A 81 1 18 HELIX 5 5 SER A 84 LEU A 93 1 10 HELIX 6 6 THR A 96 ALA A 103 1 8 HELIX 7 7 THR A 106 GLY A 123 1 18 HELIX 8 8 SER A 124 VAL A 132 1 9 HELIX 9 9 VAL A 132 SER A 147 1 16 HELIX 10 10 TYR A 158 TYR A 165 1 8 HELIX 11 11 SER A 167 LEU A 186 1 20 HELIX 12 12 SER A 189 GLN A 216 1 28 HELIX 13 13 GLN D 2 ASN D 10 1 9 HELIX 14 14 ALA D 11 SER D 20 1 10 HELIX 15 15 HIS D 21 ARG D 29 1 9 HELIX 16 16 GLU D 33 ALA D 62 1 30 HELIX 17 17 ASP D 64 GLU D 82 1 19 HELIX 18 18 SER D 84 LEU D 93 1 10 HELIX 19 19 THR D 96 ALA D 103 1 8 HELIX 20 20 THR D 106 GLY D 123 1 18 HELIX 21 21 SER D 124 VAL D 132 1 9 HELIX 22 22 VAL D 132 SER D 147 1 16 HELIX 23 23 TYR D 158 TYR D 165 1 8 HELIX 24 24 SER D 167 LEU D 184 1 18 HELIX 25 25 SER D 189 GLN D 216 1 28 CISPEP 1 ILE A 149 PRO A 150 0 -12.62 CISPEP 2 ILE D 149 PRO D 150 0 -9.76 CRYST1 148.420 148.420 233.525 90.00 90.00 90.00 I 41 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006738 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006738 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004282 0.00000