HEADER TRANSFERASE 21-SEP-07 2RD8 TITLE HUMAN THYMIDYLATE SYNTHASE STABILIZED IN ACTIVE CONFORMATION BY R163K TITLE 2 MUTATION: ASYMMETRY AND REACTIVITY OF CYS195 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TS, TSASE; COMPND 5 EC: 2.1.1.45; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: CYS AT POSITION 195; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: THYMIDYLATE SYNTHASE; COMPND 11 CHAIN: B; COMPND 12 EC: 2.1.1.45; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES; COMPND 15 OTHER_DETAILS: CME AT POSITION 195 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 GENE: TYMS, TS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 GENE: TYMS, TS; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI KEYWDS METHYL TRANSFERASE, METHYLTRANSFERASE, NUCLEOTIDE BIOSYNTHESIS, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.M.GIBSON,L.L.LOVELACE,L.LEBIODA REVDAT 5 30-AUG-23 2RD8 1 REMARK REVDAT 4 20-OCT-21 2RD8 1 REMARK SEQADV LINK REVDAT 3 25-OCT-17 2RD8 1 REMARK REVDAT 2 24-FEB-09 2RD8 1 VERSN REVDAT 1 27-MAY-08 2RD8 0 JRNL AUTH L.M.GIBSON,L.L.LOVELACE,L.LEBIODA JRNL TITL THE R163K MUTANT OF HUMAN THYMIDYLATE SYNTHASE IS STABILIZED JRNL TITL 2 IN AN ACTIVE CONFORMATION: STRUCTURAL ASYMMETRY AND JRNL TITL 3 REACTIVITY OF CYSTEINE 195. JRNL REF BIOCHEMISTRY V. 47 4636 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18370400 JRNL DOI 10.1021/BI7019386 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 70.4 REMARK 3 NUMBER OF REFLECTIONS : 26954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2711 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4566 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 88 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.35600 REMARK 3 B22 (A**2) : -10.35600 REMARK 3 B33 (A**2) : 20.71200 REMARK 3 B12 (A**2) : -13.84600 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.330 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.774 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.977 ; 2.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.248 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.869 ; 3.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 25.19 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAMHICUP REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : BME.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOPHICUP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : BME.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RD8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000044719. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97243 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30034 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 33.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 69.6 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.13800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 15.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.46500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1HVY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-20% PEG 4000, 3MM POTASSIUM REMARK 280 PHOSPHATE, 20MM 2-MERCAPTOETHANOL, 0.1M TRIS, PH 9.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.51400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.25700 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.25700 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 86.51400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5070 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 VAL A 3 REMARK 465 ALA A 4 REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 LEU A 8 REMARK 465 PRO A 9 REMARK 465 ARG A 10 REMARK 465 ARG A 11 REMARK 465 PRO A 12 REMARK 465 LEU A 13 REMARK 465 PRO A 14 REMARK 465 PRO A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 GLN A 18 REMARK 465 GLU A 19 REMARK 465 ARG A 20 REMARK 465 ASP A 21 REMARK 465 ALA A 22 REMARK 465 GLU A 23 REMARK 465 PRO A 24 REMARK 465 ARG A 25 REMARK 465 MET A 309 REMARK 465 GLU A 310 REMARK 465 MET A 311 REMARK 465 ALA A 312 REMARK 465 VAL A 313 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 VAL B 3 REMARK 465 ALA B 4 REMARK 465 GLY B 5 REMARK 465 SER B 6 REMARK 465 GLU B 7 REMARK 465 LEU B 8 REMARK 465 PRO B 9 REMARK 465 ARG B 10 REMARK 465 ARG B 11 REMARK 465 PRO B 12 REMARK 465 LEU B 13 REMARK 465 PRO B 14 REMARK 465 PRO B 15 REMARK 465 ALA B 16 REMARK 465 ALA B 17 REMARK 465 GLN B 18 REMARK 465 GLU B 19 REMARK 465 ARG B 20 REMARK 465 ASP B 21 REMARK 465 ALA B 22 REMARK 465 GLU B 23 REMARK 465 PRO B 24 REMARK 465 ARG B 25 REMARK 465 ASP B 48 REMARK 465 ASP B 49 REMARK 465 GLU B 310 REMARK 465 MET B 311 REMARK 465 ALA B 312 REMARK 465 VAL B 313 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 72 77.88 -66.16 REMARK 500 LEU A 74 137.80 -32.80 REMARK 500 LYS A 77 126.65 -175.40 REMARK 500 SER A 103 24.23 -74.78 REMARK 500 PHE A 123 48.18 -107.03 REMARK 500 ASP A 130 99.37 -69.53 REMARK 500 PRO A 133 54.98 -67.93 REMARK 500 VAL A 134 -168.65 -72.05 REMARK 500 HIS A 141 48.15 -142.12 REMARK 500 ARG A 147 -79.02 -119.18 REMARK 500 MET A 149 1.45 -61.08 REMARK 500 ASN A 260 3.93 -69.38 REMARK 500 PRO A 277 -162.46 -67.73 REMARK 500 THR B 51 4.11 57.91 REMARK 500 THR B 53 -7.44 75.37 REMARK 500 THR B 55 138.96 -179.33 REMARK 500 GLU B 70 155.61 174.86 REMARK 500 LEU B 74 134.82 -32.62 REMARK 500 SER B 103 -4.78 -57.21 REMARK 500 SER B 120 2.58 -65.16 REMARK 500 PRO B 133 58.24 -68.43 REMARK 500 VAL B 134 -169.44 -79.73 REMARK 500 ARG B 147 -80.15 -119.48 REMARK 500 SER B 151 150.91 -42.92 REMARK 500 ASN B 171 57.68 -143.78 REMARK 500 PRO B 172 -7.40 -49.54 REMARK 500 CME B 195 55.62 -107.27 REMARK 500 HIS B 196 67.78 -168.46 REMARK 500 PRO B 277 -169.81 -74.54 REMARK 500 LEU B 282 -4.32 -51.91 REMARK 500 ASN B 302 75.92 -117.91 REMARK 500 PRO B 305 -179.07 -53.41 REMARK 500 ILE B 307 -90.55 -81.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 213 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 CME B 195 -28.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 616 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 617 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 655 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HVY RELATED DB: PDB REMARK 900 RELATED ID: 1HW3 RELATED DB: PDB REMARK 900 RELATED ID: 1YPV RELATED DB: PDB DBREF 2RD8 A 1 313 UNP P04818 TYSY_HUMAN 1 313 DBREF 2RD8 B 1 313 UNP P04818 TYSY_HUMAN 1 313 SEQADV 2RD8 LYS A 163 UNP P04818 ARG 163 ENGINEERED MUTATION SEQADV 2RD8 LYS B 163 UNP P04818 ARG 163 ENGINEERED MUTATION SEQRES 1 A 313 MET PRO VAL ALA GLY SER GLU LEU PRO ARG ARG PRO LEU SEQRES 2 A 313 PRO PRO ALA ALA GLN GLU ARG ASP ALA GLU PRO ARG PRO SEQRES 3 A 313 PRO HIS GLY GLU LEU GLN TYR LEU GLY GLN ILE GLN HIS SEQRES 4 A 313 ILE LEU ARG CYS GLY VAL ARG LYS ASP ASP ARG THR GLY SEQRES 5 A 313 THR GLY THR LEU SER VAL PHE GLY MET GLN ALA ARG TYR SEQRES 6 A 313 SER LEU ARG ASP GLU PHE PRO LEU LEU THR THR LYS ARG SEQRES 7 A 313 VAL PHE TRP LYS GLY VAL LEU GLU GLU LEU LEU TRP PHE SEQRES 8 A 313 ILE LYS GLY SER THR ASN ALA LYS GLU LEU SER SER LYS SEQRES 9 A 313 GLY VAL LYS ILE TRP ASP ALA ASN GLY SER ARG ASP PHE SEQRES 10 A 313 LEU ASP SER LEU GLY PHE SER THR ARG GLU GLU GLY ASP SEQRES 11 A 313 LEU GLY PRO VAL TYR GLY PHE GLN TRP ARG HIS PHE GLY SEQRES 12 A 313 ALA GLU TYR ARG ASP MET GLU SER ASP TYR SER GLY GLN SEQRES 13 A 313 GLY VAL ASP GLN LEU GLN LYS VAL ILE ASP THR ILE LYS SEQRES 14 A 313 THR ASN PRO ASP ASP ARG ARG ILE ILE MET CYS ALA TRP SEQRES 15 A 313 ASN PRO ARG ASP LEU PRO LEU MET ALA LEU PRO PRO CYS SEQRES 16 A 313 HIS ALA LEU CYS GLN PHE TYR VAL VAL ASN SER GLU LEU SEQRES 17 A 313 SER CYS GLN LEU TYR GLN ARG SER GLY ASP MET GLY LEU SEQRES 18 A 313 GLY VAL PRO PHE ASN ILE ALA SER TYR ALA LEU LEU THR SEQRES 19 A 313 TYR MET ILE ALA HIS ILE THR GLY LEU LYS PRO GLY ASP SEQRES 20 A 313 PHE ILE HIS THR LEU GLY ASP ALA HIS ILE TYR LEU ASN SEQRES 21 A 313 HIS ILE GLU PRO LEU LYS ILE GLN LEU GLN ARG GLU PRO SEQRES 22 A 313 ARG PRO PHE PRO LYS LEU ARG ILE LEU ARG LYS VAL GLU SEQRES 23 A 313 LYS ILE ASP ASP PHE LYS ALA GLU ASP PHE GLN ILE GLU SEQRES 24 A 313 GLY TYR ASN PRO HIS PRO THR ILE LYS MET GLU MET ALA SEQRES 25 A 313 VAL SEQRES 1 B 313 MET PRO VAL ALA GLY SER GLU LEU PRO ARG ARG PRO LEU SEQRES 2 B 313 PRO PRO ALA ALA GLN GLU ARG ASP ALA GLU PRO ARG PRO SEQRES 3 B 313 PRO HIS GLY GLU LEU GLN TYR LEU GLY GLN ILE GLN HIS SEQRES 4 B 313 ILE LEU ARG CYS GLY VAL ARG LYS ASP ASP ARG THR GLY SEQRES 5 B 313 THR GLY THR LEU SER VAL PHE GLY MET GLN ALA ARG TYR SEQRES 6 B 313 SER LEU ARG ASP GLU PHE PRO LEU LEU THR THR LYS ARG SEQRES 7 B 313 VAL PHE TRP LYS GLY VAL LEU GLU GLU LEU LEU TRP PHE SEQRES 8 B 313 ILE LYS GLY SER THR ASN ALA LYS GLU LEU SER SER LYS SEQRES 9 B 313 GLY VAL LYS ILE TRP ASP ALA ASN GLY SER ARG ASP PHE SEQRES 10 B 313 LEU ASP SER LEU GLY PHE SER THR ARG GLU GLU GLY ASP SEQRES 11 B 313 LEU GLY PRO VAL TYR GLY PHE GLN TRP ARG HIS PHE GLY SEQRES 12 B 313 ALA GLU TYR ARG ASP MET GLU SER ASP TYR SER GLY GLN SEQRES 13 B 313 GLY VAL ASP GLN LEU GLN LYS VAL ILE ASP THR ILE LYS SEQRES 14 B 313 THR ASN PRO ASP ASP ARG ARG ILE ILE MET CYS ALA TRP SEQRES 15 B 313 ASN PRO ARG ASP LEU PRO LEU MET ALA LEU PRO PRO CME SEQRES 16 B 313 HIS ALA LEU CYS GLN PHE TYR VAL VAL ASN SER GLU LEU SEQRES 17 B 313 SER CYS GLN LEU TYR GLN ARG SER GLY ASP MET GLY LEU SEQRES 18 B 313 GLY VAL PRO PHE ASN ILE ALA SER TYR ALA LEU LEU THR SEQRES 19 B 313 TYR MET ILE ALA HIS ILE THR GLY LEU LYS PRO GLY ASP SEQRES 20 B 313 PHE ILE HIS THR LEU GLY ASP ALA HIS ILE TYR LEU ASN SEQRES 21 B 313 HIS ILE GLU PRO LEU LYS ILE GLN LEU GLN ARG GLU PRO SEQRES 22 B 313 ARG PRO PHE PRO LYS LEU ARG ILE LEU ARG LYS VAL GLU SEQRES 23 B 313 LYS ILE ASP ASP PHE LYS ALA GLU ASP PHE GLN ILE GLU SEQRES 24 B 313 GLY TYR ASN PRO HIS PRO THR ILE LYS MET GLU MET ALA SEQRES 25 B 313 VAL MODRES 2RD8 CME B 195 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE HET CME B 195 10 HET BME A 655 4 HET PO4 B 616 5 HET PO4 B 617 5 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM BME BETA-MERCAPTOETHANOL HETNAM PO4 PHOSPHATE ION FORMUL 2 CME C5 H11 N O3 S2 FORMUL 3 BME C2 H6 O S FORMUL 4 PO4 2(O4 P 3-) FORMUL 6 HOH *88(H2 O) HELIX 1 1 GLY A 29 GLY A 44 1 16 HELIX 2 2 PHE A 80 LYS A 93 1 14 HELIX 3 3 ASN A 97 SER A 103 1 7 HELIX 4 4 ASP A 110 GLY A 113 5 4 HELIX 5 5 SER A 114 SER A 120 1 7 HELIX 6 6 VAL A 134 PHE A 142 1 9 HELIX 7 7 ASP A 159 ASN A 171 1 13 HELIX 8 8 ASP A 186 MET A 190 5 5 HELIX 9 9 GLY A 222 THR A 241 1 20 HELIX 10 10 HIS A 261 ARG A 271 1 11 HELIX 11 11 LYS A 287 PHE A 291 5 5 HELIX 12 12 LYS A 292 GLU A 294 5 3 HELIX 13 13 GLY B 29 CYS B 43 1 15 HELIX 14 14 PHE B 80 LYS B 93 1 14 HELIX 15 15 ASN B 97 SER B 103 1 7 HELIX 16 16 ASP B 110 GLY B 113 5 4 HELIX 17 17 SER B 114 SER B 120 1 7 HELIX 18 18 VAL B 134 PHE B 142 1 9 HELIX 19 19 ASP B 159 ASN B 171 1 13 HELIX 20 20 ASP B 186 MET B 190 5 5 HELIX 21 21 GLY B 222 GLY B 242 1 21 HELIX 22 22 TYR B 258 ASN B 260 5 3 HELIX 23 23 HIS B 261 LEU B 269 1 9 HELIX 24 24 LYS B 287 PHE B 291 5 5 HELIX 25 25 LYS B 292 GLU B 294 5 3 SHEET 1 A 6 VAL A 45 ASP A 48 0 SHEET 2 A 6 GLY A 54 SER A 66 -1 O SER A 57 N VAL A 45 SHEET 3 A 6 LYS A 244 TYR A 258 -1 O ILE A 257 N LEU A 56 SHEET 4 A 6 GLU A 207 ASP A 218 1 N CYS A 210 O ILE A 249 SHEET 5 A 6 HIS A 196 VAL A 204 -1 N TYR A 202 O SER A 209 SHEET 6 A 6 ILE A 178 CYS A 180 -1 N MET A 179 O CYS A 199 SHEET 1 B 2 LYS A 278 ILE A 281 0 SHEET 2 B 2 PHE A 296 GLU A 299 -1 O GLU A 299 N LYS A 278 SHEET 1 C 5 LEU B 56 SER B 66 0 SHEET 2 C 5 LYS B 244 ILE B 257 -1 O HIS B 250 N ALA B 63 SHEET 3 C 5 GLU B 207 ASP B 218 1 N LEU B 208 O LYS B 244 SHEET 4 C 5 LEU B 198 VAL B 204 -1 N TYR B 202 O SER B 209 SHEET 5 C 5 ILE B 178 CYS B 180 -1 N MET B 179 O CYS B 199 SHEET 1 D 2 LYS B 278 ILE B 281 0 SHEET 2 D 2 PHE B 296 GLU B 299 -1 O GLU B 299 N LYS B 278 LINK C PRO B 194 N CME B 195 1555 1555 1.33 LINK C CME B 195 N HIS B 196 1555 1555 1.32 SITE 1 AC1 7 ARG A 50 ARG A 215 SER A 216 HOH A 701 SITE 2 AC1 7 ARG B 175 ARG B 176 HOH B 626 SITE 1 AC2 5 ARG A 175 ARG A 176 ARG B 50 ARG B 215 SITE 2 AC2 5 SER B 216 SITE 1 AC3 4 CYS A 195 ASP A 218 ASN A 226 HOH A 701 CRYST1 120.741 120.741 129.771 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008282 0.004782 0.000000 0.00000 SCALE2 0.000000 0.009563 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007706 0.00000