HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 22-SEP-07 2RDE TITLE CRYSTAL STRUCTURE OF VCA0042 COMPLEXED WITH C-DI-GMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN VCA0042; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 345073; SOURCE 4 STRAIN: O395; SOURCE 5 GENE: VCA0042, VC0395_0091; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS C-DI-GMP, VIBRIO CHOLERAE, VCA0042, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, NESG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.BENACH,S.S.SWAMINATHAN,R.TAMAYO,J.SEETHARAMAN,S.HANDELMAN, AUTHOR 2 F.FOROUHAR,H.NEELY,A.CAMILLI,J.F.HUNT,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 7 30-AUG-23 2RDE 1 REMARK SEQADV HETSYN REVDAT 6 25-OCT-17 2RDE 1 REMARK REVDAT 5 13-JUL-11 2RDE 1 VERSN REVDAT 4 06-OCT-09 2RDE 1 HETATM REVDAT 3 24-FEB-09 2RDE 1 VERSN REVDAT 2 18-DEC-07 2RDE 1 JRNL REVDAT 1 30-OCT-07 2RDE 0 JRNL AUTH J.BENACH,S.S.SWAMINATHAN,R.TAMAYO,S.K.HANDELMAN, JRNL AUTH 2 E.FOLTA-STOGNIEW,J.E.RAMOS,F.FOROUHAR,H.NEELY,J.SEETHARAMAN, JRNL AUTH 3 A.CAMILLI,J.F.HUNT JRNL TITL THE STRUCTURAL BASIS OF CYCLIC DIGUANYLATE SIGNAL JRNL TITL 2 TRANSDUCTION BY PILZ DOMAINS. JRNL REF EMBO J. V. 26 5153 2007 JRNL REFN ISSN 0261-4189 JRNL PMID 18034161 JRNL DOI 10.1038/SJ.EMBOJ.7601918 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 39289 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1975 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 39 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 817 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 43 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3561 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 541 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.76700 REMARK 3 B22 (A**2) : -1.68600 REMARK 3 B33 (A**2) : -1.08100 REMARK 3 B12 (A**2) : 0.73700 REMARK 3 B13 (A**2) : -2.39700 REMARK 3 B23 (A**2) : -0.34600 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.287 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 49.66 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PAR REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : CDG.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RDE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044725. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : KOHZU DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR WITH A SAGITALLY REMARK 200 FOCUSED SECOND CRYSTAL. TWO REMARK 200 SPHERICAL MIRRORS, ONE RHODIUM REMARK 200 COATED. USER CHOICE OF EITHER REMARK 200 MIRROR DEPENDING ON THE DESIRED REMARK 200 ENERGY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42107 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.41100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COMO REMARK 200 STARTING MODEL: PDB ENTRY 1YLN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 3350, 220MM POTASSIUM ACETATE, REMARK 280 100MM NA-MES, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2780 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 465 LEU A 15 REMARK 465 VAL A 16 REMARK 465 PRO A 17 REMARK 465 ARG A 18 REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 465 HIS A 21 REMARK 465 MET A 22 REMARK 465 THR A 23 REMARK 465 ALA A 248 REMARK 465 GLU A 249 REMARK 465 LYS A 250 REMARK 465 LYS A 251 REMARK 465 ALA A 252 REMARK 465 MET B 2 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 HIS B 11 REMARK 465 SER B 12 REMARK 465 SER B 13 REMARK 465 GLY B 14 REMARK 465 LEU B 15 REMARK 465 VAL B 16 REMARK 465 PRO B 17 REMARK 465 ARG B 18 REMARK 465 GLY B 19 REMARK 465 SER B 20 REMARK 465 HIS B 21 REMARK 465 MET B 22 REMARK 465 ALA B 248 REMARK 465 GLU B 249 REMARK 465 LYS B 250 REMARK 465 LYS B 251 REMARK 465 ALA B 252 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG GLU B 138 O HOH B 653 1.93 REMARK 500 O HOH A 367 O HOH A 535 1.95 REMARK 500 O THR B 242 O HOH B 634 1.98 REMARK 500 O HOH A 454 O HOH A 537 2.05 REMARK 500 OG1 THR B 245 O HOH B 638 2.05 REMARK 500 OE2 GLU A 101 O HOH A 528 2.10 REMARK 500 O HOH B 454 O HOH B 657 2.10 REMARK 500 O HOH B 464 O HOH B 524 2.10 REMARK 500 O HOH B 451 O HOH B 492 2.13 REMARK 500 O VAL B 119 O HOH B 639 2.14 REMARK 500 O HOH B 570 O HOH B 643 2.14 REMARK 500 O HOH A 336 O HOH A 497 2.18 REMARK 500 O HOH B 429 O HOH B 533 2.18 REMARK 500 O HOH B 576 O HOH B 608 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 39 -7.48 79.67 REMARK 500 THR A 65 -130.65 43.45 REMARK 500 PHE A 85 75.92 -112.87 REMARK 500 PHE A 151 110.72 -165.65 REMARK 500 ASP A 152 -132.68 56.28 REMARK 500 THR A 196 -77.57 -120.78 REMARK 500 HIS A 215 165.41 177.99 REMARK 500 SER B 39 -8.57 85.41 REMARK 500 THR B 65 -132.50 41.32 REMARK 500 LYS B 67 -64.34 -92.34 REMARK 500 ASP B 79 -70.11 -56.22 REMARK 500 LEU B 81 -72.00 -60.65 REMARK 500 PHE B 85 78.14 -113.01 REMARK 500 ASP B 152 -128.84 48.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2E A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2E B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: VCR194 RELATED DB: TARGETDB DBREF 2RDE A 23 252 UNP A5F1K1 A5F1K1_VIBCH 23 252 DBREF 2RDE B 23 252 UNP A5F1K1 A5F1K1_VIBCH 23 252 SEQADV 2RDE MET A 2 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE GLY A 3 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE SER A 4 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE SER A 5 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE HIS A 6 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE HIS A 7 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE HIS A 8 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE HIS A 9 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE HIS A 10 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE HIS A 11 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE SER A 12 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE SER A 13 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE GLY A 14 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE LEU A 15 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE VAL A 16 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE PRO A 17 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE ARG A 18 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE GLY A 19 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE SER A 20 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE HIS A 21 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE MET A 22 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE MET B 2 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE GLY B 3 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE SER B 4 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE SER B 5 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE HIS B 6 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE HIS B 7 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE HIS B 8 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE HIS B 9 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE HIS B 10 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE HIS B 11 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE SER B 12 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE SER B 13 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE GLY B 14 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE LEU B 15 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE VAL B 16 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE PRO B 17 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE ARG B 18 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE GLY B 19 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE SER B 20 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE HIS B 21 UNP A5F1K1 EXPRESSION TAG SEQADV 2RDE MET B 22 UNP A5F1K1 EXPRESSION TAG SEQRES 1 A 251 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 251 LEU VAL PRO ARG GLY SER HIS MET THR VAL SER THR ILE SEQRES 3 A 251 ASN SER THR ASP ALA LEU ALA MET VAL GLU HIS SER SER SEQRES 4 A 251 GLU LEU THR LEU SER ILE THR THR PRO VAL GLY THR LYS SEQRES 5 A 251 PHE VAL CYS ARG THR PRO PHE ILE GLY THR HIS THR ASP SEQRES 6 A 251 LYS PHE LEU LEU VAL GLU MET PRO LYS ILE SER ALA ASP SEQRES 7 A 251 ASP LEU GLN TYR PHE PHE GLN GLU GLY PHE TRP MET ASN SEQRES 8 A 251 ILE ARG ALA ILE SER PRO ARG GLY GLU GLY ALA LEU ILE SEQRES 9 A 251 HIS PHE ARG SER GLN LEU MET HIS ILE LEU GLN GLU PRO SEQRES 10 A 251 VAL PRO MET ALA PHE LEU SER ILE PRO ASN THR MET GLN SEQRES 11 A 251 VAL SER GLN LEU ARG LYS GLU PRO ARG PHE GLU LEU ASN SEQRES 12 A 251 LEU ALA GLY LYS VAL LEU PHE ASP GLU HIS ARG GLY ASP SEQRES 13 A 251 CYS GLU LEU ARG ASP LEU SER ARG SER GLY CYS ARG PHE SEQRES 14 A 251 ILE THR PRO PRO LEU GLY LYS THR TYR GLN VAL GLY ASP SEQRES 15 A 251 LEU VAL ALA LEU GLU ILE PHE SER ASP LEU ARG GLY THR SEQRES 16 A 251 LYS THR PHE PRO PRO LEU THR GLY LYS ILE CYS ASN LEU SEQRES 17 A 251 GLN ARG SER LEU HIS HIS ALA ARG TYR GLY LEU GLU PHE SEQRES 18 A 251 ASN GLU GLU GLY ARG ASN ASN ALA LYS ASN LEU LEU ALA SEQRES 19 A 251 GLN LEU LYS PHE ASN GLY THR LYS LEU THR LEU ASN ALA SEQRES 20 A 251 GLU LYS LYS ALA SEQRES 1 B 251 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 251 LEU VAL PRO ARG GLY SER HIS MET THR VAL SER THR ILE SEQRES 3 B 251 ASN SER THR ASP ALA LEU ALA MET VAL GLU HIS SER SER SEQRES 4 B 251 GLU LEU THR LEU SER ILE THR THR PRO VAL GLY THR LYS SEQRES 5 B 251 PHE VAL CYS ARG THR PRO PHE ILE GLY THR HIS THR ASP SEQRES 6 B 251 LYS PHE LEU LEU VAL GLU MET PRO LYS ILE SER ALA ASP SEQRES 7 B 251 ASP LEU GLN TYR PHE PHE GLN GLU GLY PHE TRP MET ASN SEQRES 8 B 251 ILE ARG ALA ILE SER PRO ARG GLY GLU GLY ALA LEU ILE SEQRES 9 B 251 HIS PHE ARG SER GLN LEU MET HIS ILE LEU GLN GLU PRO SEQRES 10 B 251 VAL PRO MET ALA PHE LEU SER ILE PRO ASN THR MET GLN SEQRES 11 B 251 VAL SER GLN LEU ARG LYS GLU PRO ARG PHE GLU LEU ASN SEQRES 12 B 251 LEU ALA GLY LYS VAL LEU PHE ASP GLU HIS ARG GLY ASP SEQRES 13 B 251 CYS GLU LEU ARG ASP LEU SER ARG SER GLY CYS ARG PHE SEQRES 14 B 251 ILE THR PRO PRO LEU GLY LYS THR TYR GLN VAL GLY ASP SEQRES 15 B 251 LEU VAL ALA LEU GLU ILE PHE SER ASP LEU ARG GLY THR SEQRES 16 B 251 LYS THR PHE PRO PRO LEU THR GLY LYS ILE CYS ASN LEU SEQRES 17 B 251 GLN ARG SER LEU HIS HIS ALA ARG TYR GLY LEU GLU PHE SEQRES 18 B 251 ASN GLU GLU GLY ARG ASN ASN ALA LYS ASN LEU LEU ALA SEQRES 19 B 251 GLN LEU LYS PHE ASN GLY THR LYS LEU THR LEU ASN ALA SEQRES 20 B 251 GLU LYS LYS ALA HET C2E A 301 46 HET C2E B 301 46 HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 3 C2E 2(C20 H24 N10 O14 P2) FORMUL 5 HOH *541(H2 O) HELIX 1 1 SER A 29 MET A 35 1 7 HELIX 2 2 ASP A 79 TYR A 83 5 5 HELIX 3 3 ASN A 223 LEU A 237 1 15 HELIX 4 4 SER B 29 ALA B 34 1 6 HELIX 5 5 SER B 77 PHE B 85 1 9 HELIX 6 6 ASN B 223 ALA B 235 1 13 SHEET 1 A 9 SER A 25 ASN A 28 0 SHEET 2 A 9 THR A 129 GLN A 134 -1 O VAL A 132 N SER A 25 SHEET 3 A 9 ALA A 103 LEU A 115 -1 N HIS A 106 O GLN A 131 SHEET 4 A 9 MET A 121 LEU A 124 -1 O PHE A 123 N HIS A 113 SHEET 5 A 9 PHE A 68 GLU A 72 -1 N LEU A 69 O LEU A 124 SHEET 6 A 9 LYS A 53 HIS A 64 -1 N GLY A 62 O LEU A 70 SHEET 7 A 9 GLU A 41 THR A 47 -1 N ILE A 46 O PHE A 54 SHEET 8 A 9 TRP A 90 SER A 97 -1 O ASN A 92 N SER A 45 SHEET 9 A 9 ALA A 103 LEU A 115 -1 O PHE A 107 N ILE A 93 SHEET 1 B 7 PHE A 141 PHE A 151 0 SHEET 2 B 7 HIS A 154 LEU A 163 -1 O LEU A 160 N LEU A 145 SHEET 3 B 7 GLY A 167 THR A 172 -1 O ARG A 169 N ARG A 161 SHEET 4 B 7 ALA A 216 PHE A 222 -1 O LEU A 220 N CYS A 168 SHEET 5 B 7 LEU A 202 ARG A 211 -1 N CYS A 207 O GLY A 219 SHEET 6 B 7 LEU A 184 ILE A 189 -1 N VAL A 185 O GLY A 204 SHEET 7 B 7 PHE A 141 PHE A 151 -1 N LEU A 150 O ALA A 186 SHEET 1 C 2 LYS A 238 PHE A 239 0 SHEET 2 C 2 LEU A 244 THR A 245 -1 O THR A 245 N LYS A 238 SHEET 1 D 9 SER B 25 ASN B 28 0 SHEET 2 D 9 THR B 129 SER B 133 -1 O VAL B 132 N SER B 25 SHEET 3 D 9 ALA B 103 LEU B 115 -1 N LEU B 104 O SER B 133 SHEET 4 D 9 MET B 121 SER B 125 -1 O MET B 121 N LEU B 115 SHEET 5 D 9 PHE B 68 GLU B 72 -1 N LEU B 69 O LEU B 124 SHEET 6 D 9 LYS B 53 HIS B 64 -1 N GLY B 62 O LEU B 70 SHEET 7 D 9 GLU B 41 THR B 47 -1 N LEU B 44 O CYS B 56 SHEET 8 D 9 TRP B 90 SER B 97 -1 O ASN B 92 N SER B 45 SHEET 9 D 9 ALA B 103 LEU B 115 -1 O PHE B 107 N ILE B 93 SHEET 1 E 7 PHE B 141 PHE B 151 0 SHEET 2 E 7 HIS B 154 LEU B 163 -1 O LEU B 160 N LEU B 145 SHEET 3 E 7 GLY B 167 THR B 172 -1 O ARG B 169 N ARG B 161 SHEET 4 E 7 ALA B 216 PHE B 222 -1 O LEU B 220 N CYS B 168 SHEET 5 E 7 LEU B 202 ARG B 211 -1 N CYS B 207 O GLY B 219 SHEET 6 E 7 LEU B 184 ILE B 189 -1 N LEU B 187 O LEU B 202 SHEET 7 E 7 PHE B 141 PHE B 151 -1 N LEU B 150 O ALA B 186 SHEET 1 F 2 LEU B 237 PHE B 239 0 SHEET 2 F 2 LEU B 244 LEU B 246 -1 O THR B 245 N LYS B 238 CISPEP 1 GLU A 117 PRO A 118 0 -0.01 CISPEP 2 GLU B 117 PRO B 118 0 -0.05 SITE 1 AC1 27 LEU A 135 ARG A 136 LYS A 137 ARG A 140 SITE 2 AC1 27 ASP A 162 SER A 164 SER A 166 GLY A 167 SITE 3 AC1 27 CYS A 168 ARG A 169 CYS A 207 ASN A 208 SITE 4 AC1 27 GLY A 219 LEU A 220 GLU A 221 HOH A 311 SITE 5 AC1 27 HOH A 313 HOH A 316 HOH A 321 HOH A 429 SITE 6 AC1 27 HOH A 446 HOH A 449 HOH A 477 HOH A 533 SITE 7 AC1 27 HOH A 549 LYS B 205 HOH B 531 SITE 1 AC2 28 LEU B 135 ARG B 136 LYS B 137 ARG B 140 SITE 2 AC2 28 ASP B 162 SER B 164 SER B 166 GLY B 167 SITE 3 AC2 28 CYS B 168 ARG B 169 CYS B 207 ASN B 208 SITE 4 AC2 28 GLY B 219 LEU B 220 GLU B 221 HOH B 378 SITE 5 AC2 28 HOH B 384 HOH B 387 HOH B 394 HOH B 422 SITE 6 AC2 28 HOH B 423 HOH B 430 HOH B 446 HOH B 448 SITE 7 AC2 28 HOH B 494 HOH B 551 HOH B 623 HOH B 633 CRYST1 47.006 55.400 58.044 99.88 97.09 106.80 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021274 0.006424 0.004147 0.00000 SCALE2 0.000000 0.018855 0.004214 0.00000 SCALE3 0.000000 0.000000 0.017789 0.00000