HEADER TRANSFERASE 25-SEP-07 2RE1 TITLE CRYSTAL STRUCTURE OF ASPARTOKINASE ALPHA AND BETA SUBUNITS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTOKINASE, ALPHA AND BETA SUBUNITS; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 242-405; COMPND 5 EC: 2.7.2.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS MC58; SOURCE 3 ORGANISM_TAXID: 122586; SOURCE 4 STRAIN: MC58 / SEROGROUP B; SOURCE 5 GENE: LYSC, NMB1498; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS NEISSERIA MENINGITIDIS, ASPARTOKINASE, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,H.LI,M.GU,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS AUTHOR 2 (MCSG) REVDAT 4 30-OCT-24 2RE1 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2RE1 1 VERSN REVDAT 2 24-FEB-09 2RE1 1 VERSN REVDAT 1 09-OCT-07 2RE1 0 JRNL AUTH C.CHANG,H.LI,M.GU,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF ASPARTOKINASE ALPHA AND BETA SUBUNITS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 9653 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 486 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 566 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3490 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.4190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2208 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 74.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.99000 REMARK 3 B22 (A**2) : 2.99000 REMARK 3 B33 (A**2) : -5.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.372 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.307 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.211 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2230 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3015 ; 1.399 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 296 ; 6.335 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;39.265 ;25.165 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 376 ;18.890 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;20.467 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 367 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1642 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1034 ; 0.238 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1550 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 87 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.171 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.313 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1515 ; 0.739 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2364 ; 0.961 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 779 ; 1.367 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 651 ; 2.255 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 253 A 263 REMARK 3 RESIDUE RANGE : A 340 A 404 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0234 26.9536 58.3135 REMARK 3 T TENSOR REMARK 3 T11: -0.0068 T22: 0.1379 REMARK 3 T33: -0.0768 T12: -0.1147 REMARK 3 T13: -0.0379 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 3.3490 L22: 2.8483 REMARK 3 L33: 6.2307 L12: 0.2503 REMARK 3 L13: -0.1295 L23: -2.0481 REMARK 3 S TENSOR REMARK 3 S11: -0.1894 S12: 0.2333 S13: 0.1842 REMARK 3 S21: 0.2245 S22: -0.0660 S23: 0.0361 REMARK 3 S31: -0.4435 S32: 0.6641 S33: 0.2554 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 249 B 263 REMARK 3 RESIDUE RANGE : B 340 B 404 REMARK 3 ORIGIN FOR THE GROUP (A): 13.1512 27.5707 85.1642 REMARK 3 T TENSOR REMARK 3 T11: 0.0093 T22: 0.0100 REMARK 3 T33: -0.0839 T12: 0.0370 REMARK 3 T13: -0.0779 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 4.0540 L22: 2.7059 REMARK 3 L33: 5.5592 L12: -0.3289 REMARK 3 L13: -0.4928 L23: 2.8342 REMARK 3 S TENSOR REMARK 3 S11: -0.3109 S12: 0.1568 S13: 0.1481 REMARK 3 S21: 0.0761 S22: 0.0608 S23: -0.1154 REMARK 3 S31: -0.4348 S32: 0.0685 S33: 0.2501 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 264 A 339 REMARK 3 ORIGIN FOR THE GROUP (A): -0.4705 16.5779 76.7692 REMARK 3 T TENSOR REMARK 3 T11: -0.1184 T22: 0.1297 REMARK 3 T33: -0.1397 T12: 0.1001 REMARK 3 T13: 0.0017 T23: -0.0496 REMARK 3 L TENSOR REMARK 3 L11: 5.0605 L22: 3.7798 REMARK 3 L33: 4.9061 L12: 1.7749 REMARK 3 L13: 1.4575 L23: 1.1527 REMARK 3 S TENSOR REMARK 3 S11: -0.1315 S12: -0.6350 S13: 0.0739 REMARK 3 S21: 0.3052 S22: -0.1290 S23: 0.1453 REMARK 3 S31: -0.0214 S32: -0.0117 S33: 0.2605 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 264 B 339 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9760 42.8700 68.6241 REMARK 3 T TENSOR REMARK 3 T11: 0.6054 T22: -0.0562 REMARK 3 T33: -0.0814 T12: 0.2712 REMARK 3 T13: -0.3080 T23: -0.0955 REMARK 3 L TENSOR REMARK 3 L11: 8.8633 L22: 3.9863 REMARK 3 L33: 14.3497 L12: -2.7135 REMARK 3 L13: 0.9413 L23: 1.6168 REMARK 3 S TENSOR REMARK 3 S11: -0.2493 S12: 0.5540 S13: 0.1244 REMARK 3 S21: -0.7097 S22: -0.2062 S23: 0.7215 REMARK 3 S31: -2.0873 S32: -1.1366 S33: 0.4555 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2RE1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044747. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97923 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10201 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.11500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 1000, IMIDAZOLE, CA(OAC)2, PH REMARK 280 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.95050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.90300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.90300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.97525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.90300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.90300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 143.92575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.90300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.90300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.97525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.90300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.90300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 143.92575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 95.95050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2750 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 239 REMARK 465 ASN A 240 REMARK 465 ALA A 241 REMARK 465 THR A 242 REMARK 465 PHE A 243 REMARK 465 GLU A 244 REMARK 465 GLU A 245 REMARK 465 ASP A 246 REMARK 465 ASP A 247 REMARK 465 ASN A 248 REMARK 465 MSE A 249 REMARK 465 GLU A 250 REMARK 465 ARG A 251 REMARK 465 ALA A 252 REMARK 465 VAL A 299 REMARK 465 GLY A 300 REMARK 465 SER A 301 REMARK 465 GLU A 302 REMARK 465 GLY A 405 REMARK 465 SER B 239 REMARK 465 ASN B 240 REMARK 465 ALA B 241 REMARK 465 THR B 242 REMARK 465 PHE B 243 REMARK 465 GLU B 244 REMARK 465 GLU B 245 REMARK 465 VAL B 299 REMARK 465 GLY B 300 REMARK 465 SER B 301 REMARK 465 GLU B 302 REMARK 465 GLY B 303 REMARK 465 ILE B 335 REMARK 465 GLY B 405 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 328 CG OD1 OD2 REMARK 470 SER A 329 OG REMARK 470 ILE A 330 CG1 CG2 CD1 REMARK 470 LEU A 349 CG CD1 CD2 REMARK 470 ARG A 352 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 354 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 379 CG CD OE1 OE2 REMARK 470 ILE A 380 CG1 CG2 CD1 REMARK 470 LYS A 381 CG CD CE NZ REMARK 470 ASP B 246 CG OD1 OD2 REMARK 470 ASP B 247 CG OD1 OD2 REMARK 470 ARG B 269 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 298 CG OD1 ND2 REMARK 470 THR B 304 OG1 CG2 REMARK 470 PHE B 307 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 329 OG REMARK 470 ILE B 330 CG1 CG2 CD1 REMARK 470 LEU B 349 CG CD1 CD2 REMARK 470 GLU B 379 CG CD OE1 OE2 REMARK 470 ILE B 380 CG1 CG2 CD1 REMARK 470 LYS B 381 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP B 328 CG ASP B 328 OD2 0.146 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 275 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 260 114.23 -165.37 REMARK 500 ASP A 293 -77.25 -100.21 REMARK 500 ASP A 328 -76.11 -48.42 REMARK 500 ILE A 330 -59.58 72.05 REMARK 500 MSE A 351 -54.82 -146.97 REMARK 500 ALA B 252 -7.31 -58.29 REMARK 500 ALA B 253 -49.75 69.11 REMARK 500 ASP B 273 40.14 -99.88 REMARK 500 PRO B 275 -176.56 3.32 REMARK 500 MSE B 294 64.69 61.44 REMARK 500 THR B 305 147.20 -176.62 REMARK 500 SER B 376 94.60 -160.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 274 PRO B 275 -149.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 339 OD1 REMARK 620 2 ASP A 339 OD2 51.2 REMARK 620 3 GLU B 250 O 121.6 70.5 REMARK 620 4 ALA B 253 N 87.2 98.9 98.6 REMARK 620 5 THR B 255 OG1 161.8 145.3 76.0 95.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 340 OG1 REMARK 620 2 ASP A 387 OD1 90.4 REMARK 620 3 GLU B 250 OE1 97.4 167.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC90456.1 RELATED DB: TARGETDB DBREF 2RE1 A 242 405 UNP Q9JYN6 Q9JYN6_NEIMB 242 405 DBREF 2RE1 B 242 405 UNP Q9JYN6 Q9JYN6_NEIMB 242 405 SEQADV 2RE1 SER A 239 UNP Q9JYN6 EXPRESSION TAG SEQADV 2RE1 ASN A 240 UNP Q9JYN6 EXPRESSION TAG SEQADV 2RE1 ALA A 241 UNP Q9JYN6 EXPRESSION TAG SEQADV 2RE1 SER B 239 UNP Q9JYN6 EXPRESSION TAG SEQADV 2RE1 ASN B 240 UNP Q9JYN6 EXPRESSION TAG SEQADV 2RE1 ALA B 241 UNP Q9JYN6 EXPRESSION TAG SEQRES 1 A 167 SER ASN ALA THR PHE GLU GLU ASP ASP ASN MSE GLU ARG SEQRES 2 A 167 ALA ALA VAL THR GLY ILE ALA PHE ASP LYS ASN GLN ALA SEQRES 3 A 167 ARG ILE ASN VAL ARG GLY VAL PRO ASP LYS PRO GLY VAL SEQRES 4 A 167 ALA TYR GLN ILE LEU GLY ALA VAL ALA ASP ALA ASN ILE SEQRES 5 A 167 GLU VAL ASP MSE ILE ILE GLN ASN VAL GLY SER GLU GLY SEQRES 6 A 167 THR THR ASP PHE SER PHE THR VAL PRO ARG GLY ASP TYR SEQRES 7 A 167 LYS GLN THR LEU GLU ILE LEU SER GLU ARG GLN ASP SER SEQRES 8 A 167 ILE GLY ALA ALA SER ILE ASP GLY ASP ASP THR VAL CYS SEQRES 9 A 167 LYS VAL SER ALA VAL GLY LEU GLY MSE ARG SER HIS VAL SEQRES 10 A 167 GLY VAL ALA ALA LYS ILE PHE ARG THR LEU ALA GLU GLU SEQRES 11 A 167 GLY ILE ASN ILE GLN MSE ILE SER THR SER GLU ILE LYS SEQRES 12 A 167 VAL SER VAL LEU ILE ASP GLU LYS TYR MSE GLU LEU ALA SEQRES 13 A 167 THR ARG VAL LEU HIS LYS ALA PHE ASN LEU GLY SEQRES 1 B 167 SER ASN ALA THR PHE GLU GLU ASP ASP ASN MSE GLU ARG SEQRES 2 B 167 ALA ALA VAL THR GLY ILE ALA PHE ASP LYS ASN GLN ALA SEQRES 3 B 167 ARG ILE ASN VAL ARG GLY VAL PRO ASP LYS PRO GLY VAL SEQRES 4 B 167 ALA TYR GLN ILE LEU GLY ALA VAL ALA ASP ALA ASN ILE SEQRES 5 B 167 GLU VAL ASP MSE ILE ILE GLN ASN VAL GLY SER GLU GLY SEQRES 6 B 167 THR THR ASP PHE SER PHE THR VAL PRO ARG GLY ASP TYR SEQRES 7 B 167 LYS GLN THR LEU GLU ILE LEU SER GLU ARG GLN ASP SER SEQRES 8 B 167 ILE GLY ALA ALA SER ILE ASP GLY ASP ASP THR VAL CYS SEQRES 9 B 167 LYS VAL SER ALA VAL GLY LEU GLY MSE ARG SER HIS VAL SEQRES 10 B 167 GLY VAL ALA ALA LYS ILE PHE ARG THR LEU ALA GLU GLU SEQRES 11 B 167 GLY ILE ASN ILE GLN MSE ILE SER THR SER GLU ILE LYS SEQRES 12 B 167 VAL SER VAL LEU ILE ASP GLU LYS TYR MSE GLU LEU ALA SEQRES 13 B 167 THR ARG VAL LEU HIS LYS ALA PHE ASN LEU GLY MODRES 2RE1 MSE A 294 MET SELENOMETHIONINE MODRES 2RE1 MSE A 351 MET SELENOMETHIONINE MODRES 2RE1 MSE A 374 MET SELENOMETHIONINE MODRES 2RE1 MSE A 391 MET SELENOMETHIONINE MODRES 2RE1 MSE B 249 MET SELENOMETHIONINE MODRES 2RE1 MSE B 294 MET SELENOMETHIONINE MODRES 2RE1 MSE B 351 MET SELENOMETHIONINE MODRES 2RE1 MSE B 374 MET SELENOMETHIONINE MODRES 2RE1 MSE B 391 MET SELENOMETHIONINE HET MSE A 294 8 HET MSE A 351 8 HET MSE A 374 8 HET MSE A 391 8 HET MSE B 249 8 HET MSE B 294 8 HET MSE B 351 8 HET MSE B 374 8 HET MSE B 391 8 HET CA A 501 1 HET CA A 502 1 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 3 CA 2(CA 2+) HELIX 1 1 GLY A 276 ASP A 287 1 12 HELIX 2 2 PRO A 312 GLY A 314 5 3 HELIX 3 3 ASP A 315 ARG A 326 1 12 HELIX 4 4 GLY A 356 GLU A 368 1 13 HELIX 5 5 TYR A 390 PHE A 402 1 13 HELIX 6 6 ASP B 247 ALA B 252 1 6 HELIX 7 7 GLY B 276 ALA B 288 1 13 HELIX 8 8 ASP B 315 GLU B 325 1 11 HELIX 9 9 HIS B 354 GLU B 368 1 15 HELIX 10 10 TYR B 390 PHE B 402 1 13 SHEET 1 A 4 GLY A 256 ASP A 260 0 SHEET 2 A 4 VAL A 341 VAL A 347 -1 O VAL A 347 N GLY A 256 SHEET 3 A 4 LYS A 381 ASP A 387 -1 O VAL A 382 N ALA A 346 SHEET 4 A 4 MSE A 374 THR A 377 -1 N SER A 376 O SER A 383 SHEET 1 B10 SER A 334 ASP A 338 0 SHEET 2 B10 ALA A 264 PRO A 272 -1 N ARG A 269 O SER A 334 SHEET 3 B10 THR A 304 VAL A 311 -1 O PHE A 309 N ILE A 266 SHEET 4 B10 ILE A 295 GLN A 297 -1 N ILE A 296 O SER A 308 SHEET 5 B10 MSE B 374 THR B 377 -1 O THR B 377 N ILE A 295 SHEET 6 B10 LYS B 381 ASP B 387 -1 O LEU B 385 N MSE B 374 SHEET 7 B10 SER B 334 VAL B 347 -1 N VAL B 344 O VAL B 384 SHEET 8 B10 ALA B 258 ARG B 269 -1 N ARG B 265 O ASP B 338 SHEET 9 B10 PHE B 307 PRO B 312 -1 O PHE B 309 N ILE B 266 SHEET 10 B10 ASP B 293 ILE B 296 -1 N ASP B 293 O THR B 310 LINK C ASP A 293 N MSE A 294 1555 1555 1.33 LINK C MSE A 294 N ILE A 295 1555 1555 1.32 LINK C GLY A 350 N MSE A 351 1555 1555 1.33 LINK C MSE A 351 N ARG A 352 1555 1555 1.34 LINK C GLN A 373 N MSE A 374 1555 1555 1.32 LINK C MSE A 374 N ILE A 375 1555 1555 1.33 LINK C TYR A 390 N MSE A 391 1555 1555 1.33 LINK C MSE A 391 N GLU A 392 1555 1555 1.33 LINK C ASN B 248 N MSE B 249 1555 1555 1.34 LINK C MSE B 249 N GLU B 250 1555 1555 1.33 LINK C ASP B 293 N MSE B 294 1555 1555 1.33 LINK C MSE B 294 N ILE B 295 1555 1555 1.33 LINK C GLY B 350 N MSE B 351 1555 1555 1.33 LINK C MSE B 351 N ARG B 352 1555 1555 1.33 LINK C GLN B 373 N MSE B 374 1555 1555 1.33 LINK C MSE B 374 N ILE B 375 1555 1555 1.33 LINK C TYR B 390 N MSE B 391 1555 1555 1.32 LINK C MSE B 391 N GLU B 392 1555 1555 1.33 LINK OD1 ASP A 339 CA CA A 501 1555 1555 2.47 LINK OD2 ASP A 339 CA CA A 501 1555 1555 2.57 LINK OG1 THR A 340 CA CA A 502 1555 1555 2.52 LINK OD1 ASP A 387 CA CA A 502 1555 1555 2.52 LINK CA CA A 501 O GLU B 250 1555 6455 2.43 LINK CA CA A 501 N ALA B 253 1555 6455 3.28 LINK CA CA A 501 OG1 THR B 255 1555 6455 2.47 LINK CA CA A 502 OE1 GLU B 250 1555 6455 2.42 SITE 1 AC1 4 ASP A 339 GLU B 250 ALA B 253 THR B 255 SITE 1 AC2 3 THR A 340 ASP A 387 GLU B 250 CRYST1 61.806 61.806 191.901 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016180 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016180 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005211 0.00000