HEADER UNKNOWN FUNCTION 25-SEP-07 2RE3 TITLE CRYSTAL STRUCTURE OF A DUF1285 FAMILY PROTEIN (SPO_0140) FROM TITLE 2 SILICIBACTER POMEROYI DSS-3 AT 2.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SILICIBACTER POMEROYI DSS-3; SOURCE 3 ORGANISM_TAXID: 246200; SOURCE 4 STRAIN: DSS-3, DSM 15171; SOURCE 5 ATCC: 700808; SOURCE 6 GENE: YP_165412.1, SPO0140; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 25-JAN-23 2RE3 1 REMARK SEQADV REVDAT 7 24-JUL-19 2RE3 1 REMARK LINK REVDAT 6 25-OCT-17 2RE3 1 REMARK REVDAT 5 13-JUL-11 2RE3 1 VERSN REVDAT 4 23-MAR-11 2RE3 1 JRNL REVDAT 3 28-JUL-10 2RE3 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2RE3 1 VERSN REVDAT 1 09-OCT-07 2RE3 0 JRNL AUTH G.W.HAN,C.BAKOLITSA,M.D.MILLER,A.KUMAR,D.CARLTON, JRNL AUTH 2 R.J.NAJMANOVICH,P.ABDUBEK,T.ASTAKHOVA,H.L.AXELROD,C.CHEN, JRNL AUTH 3 H.J.CHIU,T.CLAYTON,D.DAS,M.C.DELLER,L.DUAN,D.ERNST, JRNL AUTH 4 J.FEUERHELM,J.C.GRANT,A.GRZECHNIK,L.JAROSZEWSKI,K.K.JIN, JRNL AUTH 5 H.A.JOHNSON,H.E.KLOCK,M.W.KNUTH,P.KOZBIAL,S.S.KRISHNA, JRNL AUTH 6 D.MARCIANO,D.MCMULLAN,A.T.MORSE,E.NIGOGHOSSIAN,L.OKACH, JRNL AUTH 7 R.REYES,C.L.RIFE,N.SEFCOVIC,H.J.TIEN,C.B.TRAME, JRNL AUTH 8 H.VAN DEN BEDEM,D.WEEKES,Q.XU,K.O.HODGSON,J.WOOLEY, JRNL AUTH 9 M.A.ELSLIGER,A.M.DEACON,A.GODZIK,S.A.LESLEY,I.A.WILSON JRNL TITL STRUCTURES OF THE FIRST REPRESENTATIVES OF PFAM FAMILY JRNL TITL 2 PF06938 (DUF1285) REVEAL A NEW FOLD WITH REPEATED STRUCTURAL JRNL TITL 3 MOTIFS AND POSSIBLE INVOLVEMENT IN SIGNAL TRANSDUCTION. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 1218 2010 JRNL REFN ESSN 1744-3091 JRNL PMID 20944214 JRNL DOI 10.1107/S1744309109050416 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 18959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 972 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1278 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2840 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 186 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.92000 REMARK 3 B22 (A**2) : 0.92000 REMARK 3 B33 (A**2) : -1.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.418 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.275 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.182 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.258 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3040 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2107 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4146 ; 1.557 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5089 ; 0.929 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 389 ; 6.781 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;32.295 ;22.766 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 478 ;17.080 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;22.427 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 437 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3501 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 665 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 551 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2249 ; 0.209 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1474 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1670 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 159 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.077 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 52 ; 0.239 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.155 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1969 ; 1.875 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 767 ; 0.446 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3068 ; 2.937 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1247 ; 3.511 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1078 ; 4.322 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 10 A 192 4 REMARK 3 1 B 10 B 192 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2310 ; 0.410 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2310 ; 0.650 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 192 REMARK 3 ORIGIN FOR THE GROUP (A): 22.5585 4.6421 46.3050 REMARK 3 T TENSOR REMARK 3 T11: -0.0862 T22: -0.0501 REMARK 3 T33: -0.0452 T12: -0.0045 REMARK 3 T13: -0.0054 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 1.1477 L22: 1.6595 REMARK 3 L33: 4.0291 L12: 0.1053 REMARK 3 L13: 0.4754 L23: 1.0819 REMARK 3 S TENSOR REMARK 3 S11: 0.0389 S12: -0.0431 S13: -0.0899 REMARK 3 S21: -0.0126 S22: 0.0920 S23: -0.1995 REMARK 3 S31: 0.2017 S32: 0.2994 S33: -0.1309 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 193 REMARK 3 ORIGIN FOR THE GROUP (A): 4.2794 22.6291 39.4055 REMARK 3 T TENSOR REMARK 3 T11: -0.0980 T22: -0.0387 REMARK 3 T33: -0.0504 T12: -0.0238 REMARK 3 T13: 0.0110 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.0207 L22: 1.1552 REMARK 3 L33: 3.5886 L12: 0.1049 REMARK 3 L13: -1.2136 L23: -0.6221 REMARK 3 S TENSOR REMARK 3 S11: 0.1066 S12: -0.0306 S13: 0.2002 REMARK 3 S21: 0.0200 S22: -0.0226 S23: 0.1141 REMARK 3 S31: -0.2148 S32: -0.1070 S33: -0.0840 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF REMARK 3 THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO REMARK 3 ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. THE ELECTRON DENSITIES FOR RESIDUES 134-139 IN SUBUNIT B REMARK 3 ARE DISORDERED, AND THESE RESIDUES WERE MODELED BASED ON REMARK 3 THE MODEL FOR THE NCS-RELATED A SUBUNIT. REMARK 3 5. ONE GLYCEROL (GOL) FROM THE CRYOPROTECTION BUFFER WAS REMARK 3 MODELED INTO THE STRUCTURE. REMARK 4 REMARK 4 2RE3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044749. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97908, 0.97935 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19038 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.488 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : 0.12900 REMARK 200 FOR THE DATA SET : 4.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.76000 REMARK 200 R SYM FOR SHELL (I) : 0.76000 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 20.0% ETHANOL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.34350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.68500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.68500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 137.01525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.68500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.68500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.67175 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.68500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.68500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 137.01525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.68500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.68500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.67175 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 91.34350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION REMARK 300 ON BURIED SURFACE AREA. REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT REMARK 300 OF A MONOMER AS A BIOLOGICALLY SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 GLN A 4 REMARK 465 LYS A 5 REMARK 465 PRO A 6 REMARK 465 VAL A 7 REMARK 465 LYS A 8 REMARK 465 PRO A 9 REMARK 465 GLY A 193 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 465 GLY B 3 REMARK 465 GLN B 4 REMARK 465 LYS B 5 REMARK 465 PRO B 6 REMARK 465 VAL B 7 REMARK 465 LYS B 8 REMARK 465 PRO B 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 108 CE NZ REMARK 470 THR A 137 OG1 CG2 REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 SER B 10 OG REMARK 470 LYS B 108 CE NZ REMARK 470 GLN B 133 CG CD OE1 NE2 REMARK 470 THR B 137 OG1 CG2 REMARK 470 GLU B 139 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 58 73.24 -101.13 REMARK 500 ARG A 59 62.39 -171.32 REMARK 500 GLU A 74 -118.41 50.33 REMARK 500 GLU A 74 -118.80 50.33 REMARK 500 ASP A 92 -94.16 -133.25 REMARK 500 ALA A 136 -81.70 -55.63 REMARK 500 GLU B 74 -117.70 59.69 REMARK 500 ASP B 92 -92.59 -144.57 REMARK 500 ALA B 136 -79.79 -65.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 10 ALA A 11 -33.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 194 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 374660 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE FOLLOWED BY THE TARGET SEQUENCE. DBREF 2RE3 A 1 193 UNP Q5LWU5 Q5LWU5_SILPO 1 193 DBREF 2RE3 B 1 193 UNP Q5LWU5 Q5LWU5_SILPO 1 193 SEQADV 2RE3 GLY A 0 UNP Q5LWU5 EXPRESSION TAG SEQADV 2RE3 GLY B 0 UNP Q5LWU5 EXPRESSION TAG SEQRES 1 A 194 GLY MSE SER GLY GLN LYS PRO VAL LYS PRO SER ALA ASP SEQRES 2 A 194 GLY LEU LEU ALA SER ALA ARG ALA ILE LYS SER LYS GLY SEQRES 3 A 194 PRO ALA PRO VAL HIS LEU TRP ASN PRO PRO PHE ASN GLY SEQRES 4 A 194 ASP ILE ASP MSE ARG ILE ALA ARG ASP GLY THR TRP PHE SEQRES 5 A 194 TYR GLN GLY THR PRO ILE ASN ARG PRO ALA MSE VAL ARG SEQRES 6 A 194 LEU PHE SER SER ILE LEU LYS ARG GLU GLU ASP ARG PHE SEQRES 7 A 194 TYR LEU VAL THR PRO VAL GLU LYS VAL GLY ILE ARG VAL SEQRES 8 A 194 ASP ASP ALA PRO PHE VAL ALA VAL ASP VAL GLU VAL ALA SEQRES 9 A 194 GLY GLN GLY ARG LYS GLN VAL LEU THR PHE THR THR HIS SEQRES 10 A 194 VAL GLY ASP SER ALA VAL ALA GLY GLU GLY ASN PRO ILE SEQRES 11 A 194 ARG MSE ALA GLN ASP PRO ALA THR GLY GLU PRO ALA PRO SEQRES 12 A 194 TYR VAL HIS VAL ARG ALA GLY LEU GLU ALA LEU ILE ASP SEQRES 13 A 194 ARG LYS SER PHE TYR ARG LEU MSE ASP LEU GLY GLU ILE SEQRES 14 A 194 GLU ASP GLY TRP PHE GLY LEU TRP SER SER GLY SER PHE SEQRES 15 A 194 PHE PRO LEU MSE THR VAL GLU GLU LEU GLU ARG GLY SEQRES 1 B 194 GLY MSE SER GLY GLN LYS PRO VAL LYS PRO SER ALA ASP SEQRES 2 B 194 GLY LEU LEU ALA SER ALA ARG ALA ILE LYS SER LYS GLY SEQRES 3 B 194 PRO ALA PRO VAL HIS LEU TRP ASN PRO PRO PHE ASN GLY SEQRES 4 B 194 ASP ILE ASP MSE ARG ILE ALA ARG ASP GLY THR TRP PHE SEQRES 5 B 194 TYR GLN GLY THR PRO ILE ASN ARG PRO ALA MSE VAL ARG SEQRES 6 B 194 LEU PHE SER SER ILE LEU LYS ARG GLU GLU ASP ARG PHE SEQRES 7 B 194 TYR LEU VAL THR PRO VAL GLU LYS VAL GLY ILE ARG VAL SEQRES 8 B 194 ASP ASP ALA PRO PHE VAL ALA VAL ASP VAL GLU VAL ALA SEQRES 9 B 194 GLY GLN GLY ARG LYS GLN VAL LEU THR PHE THR THR HIS SEQRES 10 B 194 VAL GLY ASP SER ALA VAL ALA GLY GLU GLY ASN PRO ILE SEQRES 11 B 194 ARG MSE ALA GLN ASP PRO ALA THR GLY GLU PRO ALA PRO SEQRES 12 B 194 TYR VAL HIS VAL ARG ALA GLY LEU GLU ALA LEU ILE ASP SEQRES 13 B 194 ARG LYS SER PHE TYR ARG LEU MSE ASP LEU GLY GLU ILE SEQRES 14 B 194 GLU ASP GLY TRP PHE GLY LEU TRP SER SER GLY SER PHE SEQRES 15 B 194 PHE PRO LEU MSE THR VAL GLU GLU LEU GLU ARG GLY MODRES 2RE3 MSE A 42 MET SELENOMETHIONINE MODRES 2RE3 MSE A 62 MET SELENOMETHIONINE MODRES 2RE3 MSE A 131 MET SELENOMETHIONINE MODRES 2RE3 MSE A 163 MET SELENOMETHIONINE MODRES 2RE3 MSE A 185 MET SELENOMETHIONINE MODRES 2RE3 MSE B 42 MET SELENOMETHIONINE MODRES 2RE3 MSE B 62 MET SELENOMETHIONINE MODRES 2RE3 MSE B 131 MET SELENOMETHIONINE MODRES 2RE3 MSE B 163 MET SELENOMETHIONINE MODRES 2RE3 MSE B 185 MET SELENOMETHIONINE HET MSE A 42 8 HET MSE A 62 8 HET MSE A 131 16 HET MSE A 163 8 HET MSE A 185 8 HET MSE B 42 8 HET MSE B 62 8 HET MSE B 131 16 HET MSE B 163 8 HET MSE B 185 8 HET GOL A 194 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *186(H2 O) HELIX 1 1 GLY A 13 ILE A 21 1 9 HELIX 2 2 PRO A 28 TRP A 32 5 5 HELIX 3 3 ARG A 59 SER A 68 1 10 HELIX 4 4 GLN A 105 GLN A 109 5 5 HELIX 5 5 ASP A 155 ASP A 164 1 10 HELIX 6 6 VAL A 187 ARG A 192 1 6 HELIX 7 7 GLY B 13 ILE B 21 1 9 HELIX 8 8 PRO B 28 TRP B 32 5 5 HELIX 9 9 ARG B 59 SER B 68 1 10 HELIX 10 10 GLN B 105 GLN B 109 5 5 HELIX 11 11 ASP B 155 ASP B 164 1 10 HELIX 12 12 VAL B 187 GLY B 193 1 7 SHEET 1 A 6 THR A 55 PRO A 56 0 SHEET 2 A 6 TRP A 50 TYR A 52 -1 N TYR A 52 O THR A 55 SHEET 3 A 6 PHE A 36 ILE A 44 -1 N ARG A 43 O PHE A 51 SHEET 4 A 6 LYS A 85 VAL A 90 1 O LYS A 85 N ASN A 37 SHEET 5 A 6 ARG A 76 VAL A 80 -1 N PHE A 77 O ILE A 88 SHEET 6 A 6 LEU A 70 GLU A 73 -1 N LYS A 71 O TYR A 78 SHEET 1 B 6 SER A 120 VAL A 122 0 SHEET 2 B 6 VAL A 110 THR A 115 -1 N PHE A 113 O ALA A 121 SHEET 3 B 6 PHE A 95 ALA A 103 -1 N GLU A 101 O THR A 112 SHEET 4 B 6 LEU A 150 ILE A 154 1 O LEU A 153 N PHE A 95 SHEET 5 B 6 TYR A 143 ARG A 147 -1 N ARG A 147 O LEU A 150 SHEET 6 B 6 ILE A 129 ARG A 130 -1 N ARG A 130 O TYR A 143 SHEET 1 C 3 GLU A 167 GLU A 169 0 SHEET 2 C 3 TRP A 172 SER A 177 -1 O GLY A 174 N GLU A 167 SHEET 3 C 3 SER A 180 THR A 186 -1 O PHE A 182 N LEU A 175 SHEET 1 D 6 THR B 55 PRO B 56 0 SHEET 2 D 6 TRP B 50 TYR B 52 -1 N TYR B 52 O THR B 55 SHEET 3 D 6 PHE B 36 ILE B 44 -1 N ARG B 43 O PHE B 51 SHEET 4 D 6 LYS B 85 VAL B 90 1 O LYS B 85 N ASN B 37 SHEET 5 D 6 ARG B 76 VAL B 80 -1 N LEU B 79 O VAL B 86 SHEET 6 D 6 LEU B 70 GLU B 73 -1 N LYS B 71 O TYR B 78 SHEET 1 E 6 SER B 120 VAL B 122 0 SHEET 2 E 6 VAL B 110 THR B 115 -1 N PHE B 113 O ALA B 121 SHEET 3 E 6 PHE B 95 ALA B 103 -1 N ALA B 103 O VAL B 110 SHEET 4 E 6 LEU B 150 ILE B 154 1 O LEU B 153 N ALA B 97 SHEET 5 E 6 PRO B 140 ARG B 147 -1 N ARG B 147 O LEU B 150 SHEET 6 E 6 ILE B 129 GLN B 133 -1 N ALA B 132 O ALA B 141 SHEET 1 F 3 GLU B 167 GLU B 169 0 SHEET 2 F 3 TRP B 172 SER B 177 -1 O GLY B 174 N GLU B 167 SHEET 3 F 3 SER B 180 THR B 186 -1 O MSE B 185 N PHE B 173 LINK C ASP A 41 N MSE A 42 1555 1555 1.32 LINK C MSE A 42 N ARG A 43 1555 1555 1.33 LINK C ALA A 61 N MSE A 62 1555 1555 1.32 LINK C MSE A 62 N VAL A 63 1555 1555 1.33 LINK C ARG A 130 N AMSE A 131 1555 1555 1.34 LINK C ARG A 130 N BMSE A 131 1555 1555 1.32 LINK C AMSE A 131 N ALA A 132 1555 1555 1.33 LINK C BMSE A 131 N ALA A 132 1555 1555 1.32 LINK C LEU A 162 N MSE A 163 1555 1555 1.32 LINK C MSE A 163 N ASP A 164 1555 1555 1.33 LINK C LEU A 184 N MSE A 185 1555 1555 1.34 LINK C MSE A 185 N THR A 186 1555 1555 1.33 LINK C ASP B 41 N MSE B 42 1555 1555 1.32 LINK C MSE B 42 N ARG B 43 1555 1555 1.33 LINK C ALA B 61 N MSE B 62 1555 1555 1.32 LINK C MSE B 62 N VAL B 63 1555 1555 1.33 LINK C BARG B 130 N BMSE B 131 1555 1555 1.32 LINK C AARG B 130 N AMSE B 131 1555 1555 1.33 LINK C BMSE B 131 N ALA B 132 1555 1555 1.34 LINK C AMSE B 131 N ALA B 132 1555 1555 1.32 LINK C LEU B 162 N MSE B 163 1555 1555 1.33 LINK C MSE B 163 N ASP B 164 1555 1555 1.34 LINK C LEU B 184 N MSE B 185 1555 1555 1.34 LINK C MSE B 185 N THR B 186 1555 1555 1.34 CISPEP 1 SER B 10 ALA B 11 0 -28.44 SITE 1 AC1 2 LYS A 22 SER A 23 CRYST1 75.370 75.370 182.687 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013268 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013268 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005474 0.00000