HEADER HYDROLASE 28-SEP-07 2RF8 TITLE CRYSTAL STRUCTURE OF THE MUTANT C2A CONJUGATED BILE ACID HYDROLASE TITLE 2 FROM CLOSTRIDIUM PERFRINGENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLOYLGLYCINE HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CONJUGATED BILE ACID HYDROLASE, CBAH, BILE SALT HYDROLASE; COMPND 5 EC: 3.5.1.24; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 GENE: CBH; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PKLH101 KEYWDS CHOLOYLGLYCINE HYDROLASE, BILE SALT HYDROLASE, CBAH, BSH, NTN- KEYWDS 2 HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.ROSSMANN,W.SAENGER REVDAT 5 30-AUG-23 2RF8 1 REMARK REVDAT 4 20-OCT-21 2RF8 1 REMARK SEQADV REVDAT 3 13-JUL-11 2RF8 1 VERSN REVDAT 2 24-FEB-09 2RF8 1 VERSN REVDAT 1 07-OCT-08 2RF8 0 JRNL AUTH M.ROSSMANN,W.SAENGER JRNL TITL STRUCTURAL BASIS FOR THE CATALYTIC ACTIVITY AND PROCESSING JRNL TITL 2 OF THE CONJUGATED BILE SALT HYDROLASE FROM CLOSTRIDIUM JRNL TITL 3 PERFRINGENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 15424 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 763 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1029 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5222 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.31000 REMARK 3 B22 (A**2) : 1.31000 REMARK 3 B33 (A**2) : -2.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.511 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.332 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.381 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.848 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5341 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7233 ; 0.886 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 655 ; 4.979 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 258 ;37.712 ;25.659 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 931 ;14.353 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ; 8.597 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 811 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4034 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2528 ; 0.164 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3675 ; 0.296 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 295 ; 0.106 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 94 ; 0.121 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.084 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3357 ; 0.216 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5292 ; 0.375 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2252 ; 0.241 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1941 ; 0.394 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2RF8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044785. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : TOROIDAL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17112 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14200 REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46200 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2BJG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM BISTRIS PH 5.5, 20 MM AMMONIUM REMARK 280 SULFATE, 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 169.41650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 84.70825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 254.12475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 169.41650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 254.12475 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 84.70825 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20960 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -84.70825 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7200 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -84.70825 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 84.70825 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 367 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 45 16.83 59.10 REMARK 500 ASN A 125 44.23 -109.66 REMARK 500 THR A 174 -113.06 -129.27 REMARK 500 PRO A 177 -166.20 -74.59 REMARK 500 ALA B 2 177.53 173.60 REMARK 500 ASP B 21 78.50 -112.89 REMARK 500 VAL B 85 -163.26 -112.66 REMARK 500 THR B 174 -107.28 -129.45 REMARK 500 PRO B 177 -169.23 -73.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET B 1 ALA B 2 41.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 334 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BJF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CONJUGATED BILE ACID HYDROLASE FROM REMARK 900 CLOSTRIDIUM PERFRINGENS IN COMPLEX WITH REACTION PRODUCTS TAURINE REMARK 900 AND DEOXYCHOLATE REMARK 900 RELATED ID: 2BJG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CONJUGATED BILE ACID HYDROLASE FROM REMARK 900 CLOSTRIDIUM PERFRINGENS IN COMPLEX WITH REACTION PRODUCTS TAURINE REMARK 900 AND DEOXYCHOLATE DBREF 2RF8 A 1 329 UNP P54965 CBH_CLOPE 1 329 DBREF 2RF8 B 1 329 UNP P54965 CBH_CLOPE 1 329 SEQADV 2RF8 ALA A 2 UNP P54965 CYS 2 ENGINEERED MUTATION SEQADV 2RF8 ALA B 2 UNP P54965 CYS 2 ENGINEERED MUTATION SEQRES 1 A 329 MET ALA THR GLY LEU ALA LEU GLU THR LYS ASP GLY LEU SEQRES 2 A 329 HIS LEU PHE GLY ARG ASN MET ASP ILE GLU TYR SER PHE SEQRES 3 A 329 ASN GLN SER ILE ILE PHE ILE PRO ARG ASN PHE LYS CYS SEQRES 4 A 329 VAL ASN LYS SER ASN LYS LYS GLU LEU THR THR LYS TYR SEQRES 5 A 329 ALA VAL LEU GLY MET GLY THR ILE PHE ASP ASP TYR PRO SEQRES 6 A 329 THR PHE ALA ASP GLY MET ASN GLU LYS GLY LEU GLY CYS SEQRES 7 A 329 ALA GLY LEU ASN PHE PRO VAL TYR VAL SER TYR SER LYS SEQRES 8 A 329 GLU ASP ILE GLU GLY LYS THR ASN ILE PRO VAL TYR ASN SEQRES 9 A 329 PHE LEU LEU TRP VAL LEU ALA ASN PHE SER SER VAL GLU SEQRES 10 A 329 GLU VAL LYS GLU ALA LEU LYS ASN ALA ASN ILE VAL ASP SEQRES 11 A 329 ILE PRO ILE SER GLU ASN ILE PRO ASN THR THR LEU HIS SEQRES 12 A 329 TRP MET ILE SER ASP ILE THR GLY LYS SER ILE VAL VAL SEQRES 13 A 329 GLU GLN THR LYS GLU LYS LEU ASN VAL PHE ASP ASN ASN SEQRES 14 A 329 ILE GLY VAL LEU THR ASN SER PRO THR PHE ASP TRP HIS SEQRES 15 A 329 VAL ALA ASN LEU ASN GLN TYR VAL GLY LEU ARG TYR ASN SEQRES 16 A 329 GLN VAL PRO GLU PHE LYS LEU GLY ASP GLN SER LEU THR SEQRES 17 A 329 ALA LEU GLY GLN GLY THR GLY LEU VAL GLY LEU PRO GLY SEQRES 18 A 329 ASP PHE THR PRO ALA SER ARG PHE ILE ARG VAL ALA PHE SEQRES 19 A 329 LEU ARG ASP ALA MET ILE LYS ASN ASP LYS ASP SER ILE SEQRES 20 A 329 ASP LEU ILE GLU PHE PHE HIS ILE LEU ASN ASN VAL ALA SEQRES 21 A 329 MET VAL ARG GLY SER THR ARG THR VAL GLU GLU LYS SER SEQRES 22 A 329 ASP LEU THR GLN TYR THR SER CYS MET CYS LEU GLU LYS SEQRES 23 A 329 GLY ILE TYR TYR TYR ASN THR TYR GLU ASN ASN GLN ILE SEQRES 24 A 329 ASN ALA ILE ASP MET ASN LYS GLU ASN LEU ASP GLY ASN SEQRES 25 A 329 GLU ILE LYS THR TYR LYS TYR ASN LYS THR LEU SER ILE SEQRES 26 A 329 ASN HIS VAL ASN SEQRES 1 B 329 MET ALA THR GLY LEU ALA LEU GLU THR LYS ASP GLY LEU SEQRES 2 B 329 HIS LEU PHE GLY ARG ASN MET ASP ILE GLU TYR SER PHE SEQRES 3 B 329 ASN GLN SER ILE ILE PHE ILE PRO ARG ASN PHE LYS CYS SEQRES 4 B 329 VAL ASN LYS SER ASN LYS LYS GLU LEU THR THR LYS TYR SEQRES 5 B 329 ALA VAL LEU GLY MET GLY THR ILE PHE ASP ASP TYR PRO SEQRES 6 B 329 THR PHE ALA ASP GLY MET ASN GLU LYS GLY LEU GLY CYS SEQRES 7 B 329 ALA GLY LEU ASN PHE PRO VAL TYR VAL SER TYR SER LYS SEQRES 8 B 329 GLU ASP ILE GLU GLY LYS THR ASN ILE PRO VAL TYR ASN SEQRES 9 B 329 PHE LEU LEU TRP VAL LEU ALA ASN PHE SER SER VAL GLU SEQRES 10 B 329 GLU VAL LYS GLU ALA LEU LYS ASN ALA ASN ILE VAL ASP SEQRES 11 B 329 ILE PRO ILE SER GLU ASN ILE PRO ASN THR THR LEU HIS SEQRES 12 B 329 TRP MET ILE SER ASP ILE THR GLY LYS SER ILE VAL VAL SEQRES 13 B 329 GLU GLN THR LYS GLU LYS LEU ASN VAL PHE ASP ASN ASN SEQRES 14 B 329 ILE GLY VAL LEU THR ASN SER PRO THR PHE ASP TRP HIS SEQRES 15 B 329 VAL ALA ASN LEU ASN GLN TYR VAL GLY LEU ARG TYR ASN SEQRES 16 B 329 GLN VAL PRO GLU PHE LYS LEU GLY ASP GLN SER LEU THR SEQRES 17 B 329 ALA LEU GLY GLN GLY THR GLY LEU VAL GLY LEU PRO GLY SEQRES 18 B 329 ASP PHE THR PRO ALA SER ARG PHE ILE ARG VAL ALA PHE SEQRES 19 B 329 LEU ARG ASP ALA MET ILE LYS ASN ASP LYS ASP SER ILE SEQRES 20 B 329 ASP LEU ILE GLU PHE PHE HIS ILE LEU ASN ASN VAL ALA SEQRES 21 B 329 MET VAL ARG GLY SER THR ARG THR VAL GLU GLU LYS SER SEQRES 22 B 329 ASP LEU THR GLN TYR THR SER CYS MET CYS LEU GLU LYS SEQRES 23 B 329 GLY ILE TYR TYR TYR ASN THR TYR GLU ASN ASN GLN ILE SEQRES 24 B 329 ASN ALA ILE ASP MET ASN LYS GLU ASN LEU ASP GLY ASN SEQRES 25 B 329 GLU ILE LYS THR TYR LYS TYR ASN LYS THR LEU SER ILE SEQRES 26 B 329 ASN HIS VAL ASN HET GOL A 332 6 HET GOL A 334 6 HET GOL B 333 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *214(H2 O) HELIX 1 1 ASN A 104 PHE A 113 1 10 HELIX 2 2 SER A 115 LEU A 123 1 9 HELIX 3 3 THR A 178 LEU A 186 1 9 HELIX 4 4 ASN A 187 VAL A 190 5 4 HELIX 5 5 GLY A 213 VAL A 217 5 5 HELIX 6 6 THR A 224 ASP A 243 1 20 HELIX 7 7 LYS A 244 ILE A 247 5 4 HELIX 8 8 ASP A 248 VAL A 259 1 12 HELIX 9 9 ASN A 305 GLU A 307 5 3 HELIX 10 10 ASN B 104 PHE B 113 1 10 HELIX 11 11 SER B 115 LEU B 123 1 9 HELIX 12 12 THR B 178 ASN B 187 1 10 HELIX 13 13 GLN B 188 VAL B 190 5 3 HELIX 14 14 GLY B 213 VAL B 217 5 5 HELIX 15 15 THR B 224 ASP B 243 1 20 HELIX 16 16 LYS B 244 ILE B 247 5 4 HELIX 17 17 ASP B 248 VAL B 259 1 12 HELIX 18 18 ASN B 305 GLU B 307 5 3 SHEET 1 A 7 VAL A 172 LEU A 173 0 SHEET 2 A 7 THR A 3 GLU A 8 -1 N GLY A 4 O LEU A 173 SHEET 3 A 7 HIS A 14 ILE A 22 -1 O LEU A 15 N LEU A 7 SHEET 4 A 7 LEU A 275 CYS A 283 -1 O MET A 282 N PHE A 16 SHEET 5 A 7 ILE A 288 THR A 293 -1 O TYR A 290 N CYS A 281 SHEET 6 A 7 ASN A 300 ASP A 303 -1 O ILE A 302 N TYR A 289 SHEET 7 A 7 ASN B 326 HIS B 327 1 O ASN B 326 N ALA A 301 SHEET 1 B 8 LEU A 163 ASP A 167 0 SHEET 2 B 8 SER A 153 GLN A 158 -1 N VAL A 155 O PHE A 166 SHEET 3 B 8 LEU A 142 SER A 147 -1 N TRP A 144 O VAL A 156 SHEET 4 B 8 GLY A 77 ASN A 82 -1 N GLY A 77 O SER A 147 SHEET 5 B 8 TYR A 64 ASN A 72 -1 N ALA A 68 O GLY A 80 SHEET 6 B 8 VAL A 54 PHE A 61 -1 N LEU A 55 O MET A 71 SHEET 7 B 8 SER A 29 ILE A 33 -1 N ILE A 31 O GLY A 56 SHEET 8 B 8 LYS A 315 TYR A 317 -1 O LYS A 315 N PHE A 32 SHEET 1 C 2 LYS A 38 VAL A 40 0 SHEET 2 C 2 GLU A 47 THR A 49 -1 O LEU A 48 N CYS A 39 SHEET 1 D 2 THR A 98 PRO A 101 0 SHEET 2 D 2 ALA A 126 VAL A 129 1 O ASN A 127 N ILE A 100 SHEET 1 E 2 GLU A 199 LEU A 202 0 SHEET 2 E 2 GLN A 205 THR A 208 -1 O LEU A 207 N PHE A 200 SHEET 1 F 7 ASN A 326 HIS A 327 0 SHEET 2 F 7 ASN B 300 ASP B 303 1 O ALA B 301 N ASN A 326 SHEET 3 F 7 ILE B 288 THR B 293 -1 N TYR B 291 O ASN B 300 SHEET 4 F 7 LEU B 275 CYS B 283 -1 N CYS B 281 O TYR B 290 SHEET 5 F 7 HIS B 14 ILE B 22 -1 N PHE B 16 O MET B 282 SHEET 6 F 7 THR B 3 GLU B 8 -1 N LEU B 7 O LEU B 15 SHEET 7 F 7 VAL B 172 LEU B 173 -1 O LEU B 173 N GLY B 4 SHEET 1 G 8 LEU B 163 ASP B 167 0 SHEET 2 G 8 SER B 153 GLN B 158 -1 N GLU B 157 O ASN B 164 SHEET 3 G 8 LEU B 142 SER B 147 -1 N ILE B 146 O ILE B 154 SHEET 4 G 8 GLY B 77 ASN B 82 -1 N GLY B 77 O SER B 147 SHEET 5 G 8 TYR B 64 ASN B 72 -1 N ALA B 68 O GLY B 80 SHEET 6 G 8 VAL B 54 PHE B 61 -1 N LEU B 55 O MET B 71 SHEET 7 G 8 SER B 29 ILE B 33 -1 N ILE B 33 O VAL B 54 SHEET 8 G 8 LYS B 315 TYR B 317 -1 O TYR B 317 N ILE B 30 SHEET 1 H 2 LYS B 38 VAL B 40 0 SHEET 2 H 2 GLU B 47 THR B 49 -1 O LEU B 48 N CYS B 39 SHEET 1 I 2 THR B 98 PRO B 101 0 SHEET 2 I 2 ALA B 126 VAL B 129 1 O ASN B 127 N ILE B 100 SHEET 1 J 2 GLU B 199 LEU B 202 0 SHEET 2 J 2 GLN B 205 THR B 208 -1 O LEU B 207 N PHE B 200 CISPEP 1 SER A 176 PRO A 177 0 3.70 CISPEP 2 SER B 176 PRO B 177 0 3.83 SITE 1 AC1 7 ALA A 2 ASN A 82 PRO A 84 ASN A 175 SITE 2 AC1 7 ARG A 228 MET A 261 GLN B 212 SITE 1 AC2 9 LEU A 210 GLY A 211 MET B 1 ASN B 82 SITE 2 AC2 9 PRO B 84 ASN B 175 PRO B 225 HOH B 373 SITE 3 AC2 9 HOH B 379 SITE 1 AC3 4 ASN A 36 LYS A 38 ASN A 312 HOH A 419 CRYST1 64.640 64.640 338.833 90.00 90.00 90.00 P 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015470 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015470 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002951 0.00000