HEADER TRANSFERASE 28-SEP-07 2RFD TITLE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE EGFR KINASE DOMAIN AND A TITLE 2 MIG6 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PROTEIN KINASE DOMAIN; COMPND 5 SYNONYM: RECEPTOR TYROSINE-PROTEIN KINASE ERBB-1; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: ERBB RECEPTOR FEEDBACK INHIBITOR 1; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: SEQUENCE DATABASE RESIDUES, 340-364; COMPND 13 SYNONYM: MITOGEN-INDUCIBLE GENE 6 PROTEIN, MIG-6; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGFR, ERBB1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULORVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC-HT; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606 KEYWDS KINASE DOMAIN, INHIBITION, DIMER, ALTERNATIVE SPLICING, ANTI- KEYWDS 2 ONCOGENE, ATP-BINDING, CELL CYCLE, DISEASE MUTATION, GLYCOPROTEIN, KEYWDS 3 MEMBRANE, NUCLEOTIDE-BINDING, PHOSPHORYLATION, POLYMORPHISM, KEYWDS 4 RECEPTOR, SECRETED, TRANSFERASE, TRANSMEMBRANE, TYROSINE-PROTEIN KEYWDS 5 KINASE, UBL CONJUGATION, CYTOPLASM EXPDTA X-RAY DIFFRACTION AUTHOR X.ZHANG,K.A.PICKIN,R.BOSE,N.JURA,P.A.COLE,J.KURIYAN REVDAT 5 30-AUG-23 2RFD 1 REMARK REVDAT 4 20-OCT-21 2RFD 1 SOURCE REMARK SEQADV REVDAT 3 25-OCT-17 2RFD 1 REMARK REVDAT 2 24-FEB-09 2RFD 1 VERSN REVDAT 1 04-DEC-07 2RFD 0 JRNL AUTH X.ZHANG,K.A.PICKIN,R.BOSE,N.JURA,P.A.COLE,J.KURIYAN JRNL TITL INHIBITION OF THE EGF RECEPTOR BY BINDING OF MIG6 TO AN JRNL TITL 2 ACTIVATING KINASE DOMAIN INTERFACE. JRNL REF NATURE V. 450 741 2007 JRNL REFN ISSN 0028-0836 JRNL PMID 18046415 JRNL DOI 10.1038/NATURE05998 REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 16460 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 798 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4740 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.92600 REMARK 3 B22 (A**2) : -2.92600 REMARK 3 B33 (A**2) : 5.85300 REMARK 3 B12 (A**2) : -15.29300 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.578 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.891 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.815 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.147 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 40.67 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RFD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044790. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17156 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.45400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2GS7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 200 MM NA2SO4, 100 MM BIS REMARK 280 -TRIS PROPANE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.28400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 158.56800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 118.92600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 198.21000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.64200 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 79.28400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 158.56800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 198.21000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 118.92600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 39.64200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1610 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1410 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 675 REMARK 465 ALA A 676 REMARK 465 MET A 677 REMARK 465 ALA A 678 REMARK 465 ALA A 726 REMARK 465 THR A 727 REMARK 465 SER A 728 REMARK 465 ALA A 840 REMARK 465 GLU A 841 REMARK 465 GLU A 842 REMARK 465 LYS A 843 REMARK 465 GLU A 844 REMARK 465 TYR A 845 REMARK 465 HIS A 846 REMARK 465 ALA A 847 REMARK 465 GLU A 848 REMARK 465 GLY A 849 REMARK 465 GLY A 850 REMARK 465 SER A 967 REMARK 465 PRO A 968 REMARK 465 THR A 969 REMARK 465 ASP A 970 REMARK 465 SER A 971 REMARK 465 ASN A 972 REMARK 465 PHE A 973 REMARK 465 TYR A 974 REMARK 465 ARG A 975 REMARK 465 ALA A 976 REMARK 465 LEU A 977 REMARK 465 MET A 978 REMARK 465 ASP A 979 REMARK 465 GLU A 980 REMARK 465 PRO A 995 REMARK 465 GLN A 996 REMARK 465 GLN A 997 REMARK 465 GLY A 998 REMARK 465 GLY B 675 REMARK 465 ALA B 676 REMARK 465 MET B 677 REMARK 465 ALA B 678 REMARK 465 ALA B 726 REMARK 465 THR B 727 REMARK 465 SER B 728 REMARK 465 PRO B 729 REMARK 465 GLU B 842 REMARK 465 LYS B 843 REMARK 465 GLU B 844 REMARK 465 TYR B 845 REMARK 465 HIS B 846 REMARK 465 ALA B 847 REMARK 465 GLU B 848 REMARK 465 GLY B 849 REMARK 465 SER B 967 REMARK 465 PRO B 968 REMARK 465 THR B 969 REMARK 465 ASP B 970 REMARK 465 SER B 971 REMARK 465 ASN B 972 REMARK 465 PHE B 973 REMARK 465 TYR B 974 REMARK 465 ARG B 975 REMARK 465 ALA B 976 REMARK 465 LEU B 977 REMARK 465 MET B 978 REMARK 465 ASP B 979 REMARK 465 GLU B 980 REMARK 465 GLU B 981 REMARK 465 ASP B 982 REMARK 465 MET B 983 REMARK 465 ASP B 984 REMARK 465 PRO B 995 REMARK 465 GLN B 996 REMARK 465 GLN B 997 REMARK 465 GLY B 998 REMARK 465 SER C 340 REMARK 465 TYR C 341 REMARK 465 LEU C 342 REMARK 465 ASN C 343 REMARK 465 GLY C 344 REMARK 465 VAL C 345 REMARK 465 LYS C 362 REMARK 465 ALA C 363 REMARK 465 LEU C 364 REMARK 465 SER D 340 REMARK 465 TYR D 341 REMARK 465 LEU D 342 REMARK 465 ASN D 343 REMARK 465 GLY D 344 REMARK 465 VAL D 345 REMARK 465 SER D 361 REMARK 465 LYS D 362 REMARK 465 ALA D 363 REMARK 465 LEU D 364 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 689 CG CD CE NZ REMARK 470 PHE A 699 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 710 CG CD OE1 OE2 REMARK 470 LYS A 715 CG CD CE NZ REMARK 470 ARG A 724 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 725 CG CD OE1 OE2 REMARK 470 LYS A 730 CG CD CE NZ REMARK 470 LYS A 733 CG CD CE NZ REMARK 470 LYS A 782 CG CD CE NZ REMARK 470 LYS A 946 CG CD CE NZ REMARK 470 ARG A 962 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 964 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 981 CG CD OE1 OE2 REMARK 470 ASP A 982 CG OD1 OD2 REMARK 470 LYS B 692 CG CD CE NZ REMARK 470 LYS B 704 CG CD CE NZ REMARK 470 LYS B 713 CG CD CE NZ REMARK 470 ARG B 724 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 725 CG CD OE1 OE2 REMARK 470 LYS B 782 CG CD CE NZ REMARK 470 ARG B 808 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 851 CG CD CE NZ REMARK 470 LYS B 855 CG CD CE NZ REMARK 470 ARG B 962 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 964 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 985 CG OD1 OD2 REMARK 470 GLU B 991 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 770 C - N - CA ANGL. DEV. = 12.4 DEGREES REMARK 500 PRO C 348 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 687 8.32 -62.69 REMARK 500 ALA A 698 -94.23 -43.91 REMARK 500 ILE A 708 77.92 -106.81 REMARK 500 PRO A 709 96.80 -47.76 REMARK 500 GLU A 710 128.16 -38.12 REMARK 500 ALA A 743 40.34 -97.84 REMARK 500 THR A 759 -138.49 -139.34 REMARK 500 HIS A 781 8.43 -156.77 REMARK 500 LYS A 782 -65.80 -27.19 REMARK 500 ASN A 784 -7.18 164.51 REMARK 500 SER A 787 -71.59 -56.80 REMARK 500 ARG A 812 -38.78 88.40 REMARK 500 LEU A 863 -74.41 -70.84 REMARK 500 SER A 900 -38.68 -37.26 REMARK 500 LYS A 905 0.82 -69.95 REMARK 500 ILE A 917 -50.12 -20.42 REMARK 500 ASP A 932 4.42 -63.01 REMARK 500 ASP A 950 53.92 -159.77 REMARK 500 GLN A 952 -14.57 -48.77 REMARK 500 ASP A 982 -88.80 -171.22 REMARK 500 MET A 983 -160.92 57.71 REMARK 500 ASP A 985 15.04 90.95 REMARK 500 ALA B 698 -73.65 19.29 REMARK 500 LYS B 704 75.32 -106.30 REMARK 500 GLU B 710 130.95 -39.04 REMARK 500 LYS B 733 -73.53 -91.95 REMARK 500 VAL B 745 93.22 -45.34 REMARK 500 THR B 759 -132.07 -138.91 REMARK 500 ASP B 776 4.99 -66.57 REMARK 500 LYS B 782 -62.44 -21.78 REMARK 500 ASP B 783 79.81 -107.07 REMARK 500 ASN B 784 -0.85 177.97 REMARK 500 ARG B 812 -40.51 73.26 REMARK 500 HIS B 826 109.82 -170.11 REMARK 500 HIS B 864 30.28 -140.89 REMARK 500 ARG B 865 51.05 35.61 REMARK 500 SER B 888 139.78 -30.12 REMARK 500 TYR B 920 -8.59 -57.52 REMARK 500 MET B 923 -70.51 -78.17 REMARK 500 VAL B 924 -32.60 -39.71 REMARK 500 ALA B 948 26.84 -58.05 REMARK 500 ASP B 950 64.49 -160.92 REMARK 500 GLN B 952 -9.64 -54.86 REMARK 500 ASP B 960 -38.38 -39.57 REMARK 500 ARG B 962 52.08 -62.54 REMARK 500 LEU B 993 35.31 -87.26 REMARK 500 PRO D 347 175.10 -53.35 REMARK 500 PRO D 354 52.75 -102.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RF9 RELATED DB: PDB REMARK 900 RELATED ID: 2RFE RELATED DB: PDB DBREF 2RFD A 678 998 UNP P00533 EGFR_HUMAN 702 1022 DBREF 2RFD B 678 998 UNP P00533 EGFR_HUMAN 702 1022 DBREF 2RFD C 340 364 UNP Q9UJM3 ERRFI_HUMAN 340 364 DBREF 2RFD D 340 364 UNP Q9UJM3 ERRFI_HUMAN 340 364 SEQADV 2RFD GLY A 675 UNP P00533 EXPRESSION TAG SEQADV 2RFD ALA A 676 UNP P00533 EXPRESSION TAG SEQADV 2RFD MET A 677 UNP P00533 EXPRESSION TAG SEQADV 2RFD GLU A 799 UNP P00533 LYS 823 ENGINEERED MUTATION SEQADV 2RFD GLY B 675 UNP P00533 EXPRESSION TAG SEQADV 2RFD ALA B 676 UNP P00533 EXPRESSION TAG SEQADV 2RFD MET B 677 UNP P00533 EXPRESSION TAG SEQADV 2RFD GLU B 799 UNP P00533 LYS 823 ENGINEERED MUTATION SEQRES 1 A 324 GLY ALA MET ALA LEU LEU ARG ILE LEU LYS GLU THR GLU SEQRES 2 A 324 PHE LYS LYS ILE LYS VAL LEU GLY SER GLY ALA PHE GLY SEQRES 3 A 324 THR VAL TYR LYS GLY LEU TRP ILE PRO GLU GLY GLU LYS SEQRES 4 A 324 VAL LYS ILE PRO VAL ALA ILE LYS GLU LEU ARG GLU ALA SEQRES 5 A 324 THR SER PRO LYS ALA ASN LYS GLU ILE LEU ASP GLU ALA SEQRES 6 A 324 TYR VAL MET ALA SER VAL ASP ASN PRO HIS VAL CYS ARG SEQRES 7 A 324 LEU LEU GLY ILE CYS LEU THR SER THR VAL GLN LEU ILE SEQRES 8 A 324 THR GLN LEU MET PRO PHE GLY CYS LEU LEU ASP TYR VAL SEQRES 9 A 324 ARG GLU HIS LYS ASP ASN ILE GLY SER GLN TYR LEU LEU SEQRES 10 A 324 ASN TRP CYS VAL GLN ILE ALA GLU GLY MET ASN TYR LEU SEQRES 11 A 324 GLU ASP ARG ARG LEU VAL HIS ARG ASP LEU ALA ALA ARG SEQRES 12 A 324 ASN VAL LEU VAL LYS THR PRO GLN HIS VAL LYS ILE THR SEQRES 13 A 324 ASP PHE GLY LEU ALA LYS LEU LEU GLY ALA GLU GLU LYS SEQRES 14 A 324 GLU TYR HIS ALA GLU GLY GLY LYS VAL PRO ILE LYS TRP SEQRES 15 A 324 MET ALA LEU GLU SER ILE LEU HIS ARG ILE TYR THR HIS SEQRES 16 A 324 GLN SER ASP VAL TRP SER TYR GLY VAL THR VAL TRP GLU SEQRES 17 A 324 LEU MET THR PHE GLY SER LYS PRO TYR ASP GLY ILE PRO SEQRES 18 A 324 ALA SER GLU ILE SER SER ILE LEU GLU LYS GLY GLU ARG SEQRES 19 A 324 LEU PRO GLN PRO PRO ILE CYS THR ILE ASP VAL TYR MET SEQRES 20 A 324 ILE MET VAL LYS CYS TRP MET ILE ASP ALA ASP SER ARG SEQRES 21 A 324 PRO LYS PHE ARG GLU LEU ILE ILE GLU PHE SER LYS MET SEQRES 22 A 324 ALA ARG ASP PRO GLN ARG TYR LEU VAL ILE GLN GLY ASP SEQRES 23 A 324 GLU ARG MET HIS LEU PRO SER PRO THR ASP SER ASN PHE SEQRES 24 A 324 TYR ARG ALA LEU MET ASP GLU GLU ASP MET ASP ASP VAL SEQRES 25 A 324 VAL ASP ALA ASP GLU TYR LEU ILE PRO GLN GLN GLY SEQRES 1 B 324 GLY ALA MET ALA LEU LEU ARG ILE LEU LYS GLU THR GLU SEQRES 2 B 324 PHE LYS LYS ILE LYS VAL LEU GLY SER GLY ALA PHE GLY SEQRES 3 B 324 THR VAL TYR LYS GLY LEU TRP ILE PRO GLU GLY GLU LYS SEQRES 4 B 324 VAL LYS ILE PRO VAL ALA ILE LYS GLU LEU ARG GLU ALA SEQRES 5 B 324 THR SER PRO LYS ALA ASN LYS GLU ILE LEU ASP GLU ALA SEQRES 6 B 324 TYR VAL MET ALA SER VAL ASP ASN PRO HIS VAL CYS ARG SEQRES 7 B 324 LEU LEU GLY ILE CYS LEU THR SER THR VAL GLN LEU ILE SEQRES 8 B 324 THR GLN LEU MET PRO PHE GLY CYS LEU LEU ASP TYR VAL SEQRES 9 B 324 ARG GLU HIS LYS ASP ASN ILE GLY SER GLN TYR LEU LEU SEQRES 10 B 324 ASN TRP CYS VAL GLN ILE ALA GLU GLY MET ASN TYR LEU SEQRES 11 B 324 GLU ASP ARG ARG LEU VAL HIS ARG ASP LEU ALA ALA ARG SEQRES 12 B 324 ASN VAL LEU VAL LYS THR PRO GLN HIS VAL LYS ILE THR SEQRES 13 B 324 ASP PHE GLY LEU ALA LYS LEU LEU GLY ALA GLU GLU LYS SEQRES 14 B 324 GLU TYR HIS ALA GLU GLY GLY LYS VAL PRO ILE LYS TRP SEQRES 15 B 324 MET ALA LEU GLU SER ILE LEU HIS ARG ILE TYR THR HIS SEQRES 16 B 324 GLN SER ASP VAL TRP SER TYR GLY VAL THR VAL TRP GLU SEQRES 17 B 324 LEU MET THR PHE GLY SER LYS PRO TYR ASP GLY ILE PRO SEQRES 18 B 324 ALA SER GLU ILE SER SER ILE LEU GLU LYS GLY GLU ARG SEQRES 19 B 324 LEU PRO GLN PRO PRO ILE CYS THR ILE ASP VAL TYR MET SEQRES 20 B 324 ILE MET VAL LYS CYS TRP MET ILE ASP ALA ASP SER ARG SEQRES 21 B 324 PRO LYS PHE ARG GLU LEU ILE ILE GLU PHE SER LYS MET SEQRES 22 B 324 ALA ARG ASP PRO GLN ARG TYR LEU VAL ILE GLN GLY ASP SEQRES 23 B 324 GLU ARG MET HIS LEU PRO SER PRO THR ASP SER ASN PHE SEQRES 24 B 324 TYR ARG ALA LEU MET ASP GLU GLU ASP MET ASP ASP VAL SEQRES 25 B 324 VAL ASP ALA ASP GLU TYR LEU ILE PRO GLN GLN GLY SEQRES 1 C 25 SER TYR LEU ASN GLY VAL MET PRO PRO THR GLN SER PHE SEQRES 2 C 25 ALA PRO ASP PRO LYS TYR VAL SER SER LYS ALA LEU SEQRES 1 D 25 SER TYR LEU ASN GLY VAL MET PRO PRO THR GLN SER PHE SEQRES 2 D 25 ALA PRO ASP PRO LYS TYR VAL SER SER LYS ALA LEU HET SO4 A 1 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 O4 S 2- HELIX 1 1 ALA A 731 ALA A 743 1 13 HELIX 2 2 CYS A 773 GLU A 780 1 8 HELIX 3 3 GLY A 786 ARG A 807 1 22 HELIX 4 4 ALA A 815 ARG A 817 5 3 HELIX 5 5 GLY A 833 LEU A 838 1 6 HELIX 6 6 ALA A 858 ARG A 865 1 8 HELIX 7 7 THR A 868 THR A 885 1 18 HELIX 8 8 PRO A 895 LYS A 905 1 11 HELIX 9 9 THR A 916 LYS A 925 1 10 HELIX 10 10 ASP A 930 ARG A 934 5 5 HELIX 11 11 LYS A 936 LYS A 946 1 11 HELIX 12 12 ASP A 950 TYR A 954 5 5 HELIX 13 13 ASP A 988 LEU A 993 1 6 HELIX 14 14 ALA B 731 ALA B 743 1 13 HELIX 15 15 LEU B 774 ARG B 779 1 6 HELIX 16 16 HIS B 781 ILE B 785 5 5 HELIX 17 17 GLY B 786 ARG B 807 1 22 HELIX 18 18 GLY B 833 GLY B 839 1 7 HELIX 19 19 ALA B 858 HIS B 864 1 7 HELIX 20 20 THR B 868 THR B 885 1 18 HELIX 21 21 PRO B 895 GLU B 904 1 10 HELIX 22 22 THR B 916 LYS B 925 1 10 HELIX 23 23 CYS B 926 MET B 928 5 3 HELIX 24 24 ASP B 930 ARG B 934 5 5 HELIX 25 25 LYS B 936 ALA B 948 1 13 HELIX 26 26 ARG B 949 TYR B 954 5 6 SHEET 1 A 6 ARG A 681 ILE A 682 0 SHEET 2 A 6 LEU A 753 LEU A 758 1 O ILE A 756 N ARG A 681 SHEET 3 A 6 VAL A 762 GLN A 767 -1 O ILE A 765 N GLY A 755 SHEET 4 A 6 ILE A 716 LEU A 723 -1 N LYS A 721 O LEU A 764 SHEET 5 A 6 THR A 701 TRP A 707 -1 N TYR A 703 O ILE A 720 SHEET 6 A 6 PHE A 688 GLY A 695 -1 N GLY A 695 O VAL A 702 SHEET 1 B 2 VAL A 819 THR A 823 0 SHEET 2 B 2 HIS A 826 ILE A 829 -1 O LYS A 828 N LEU A 820 SHEET 1 C 2 GLU A 907 ARG A 908 0 SHEET 2 C 2 GLN C 350 SER C 351 -1 O GLN C 350 N ARG A 908 SHEET 1 D 6 ARG B 681 ILE B 682 0 SHEET 2 D 6 LEU B 753 LEU B 758 1 O ILE B 756 N ARG B 681 SHEET 3 D 6 VAL B 762 GLN B 767 -1 O ILE B 765 N GLY B 755 SHEET 4 D 6 ILE B 716 LEU B 723 -1 N ALA B 719 O THR B 766 SHEET 5 D 6 LEU B 706 TRP B 707 -1 N TRP B 707 O ILE B 716 SHEET 6 D 6 PHE B 688 LYS B 689 -1 N LYS B 689 O LEU B 706 SHEET 1 E 6 ARG B 681 ILE B 682 0 SHEET 2 E 6 LEU B 753 LEU B 758 1 O ILE B 756 N ARG B 681 SHEET 3 E 6 VAL B 762 GLN B 767 -1 O ILE B 765 N GLY B 755 SHEET 4 E 6 ILE B 716 LEU B 723 -1 N ALA B 719 O THR B 766 SHEET 5 E 6 GLY B 700 TYR B 703 -1 N TYR B 703 O ILE B 720 SHEET 6 E 6 VAL B 693 GLY B 697 -1 N GLY B 695 O VAL B 702 SHEET 1 F 2 VAL B 819 THR B 823 0 SHEET 2 F 2 HIS B 826 ILE B 829 -1 O LYS B 828 N LEU B 820 SHEET 1 G 2 GLU B 907 ARG B 908 0 SHEET 2 G 2 GLN D 350 SER D 351 -1 O GLN D 350 N ARG B 908 CISPEP 1 ALA C 353 PRO C 354 0 0.32 CISPEP 2 ALA D 353 PRO D 354 0 0.50 SITE 1 AC1 6 ARG A 808 LEU A 809 VAL A 810 LYS A 836 SITE 2 AC1 6 LYS B 936 ARG B 938 CRYST1 143.964 143.964 237.852 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006946 0.004010 0.000000 0.00000 SCALE2 0.000000 0.008021 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004204 0.00000