data_2RG3 # _entry.id 2RG3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2RG3 RCSB RCSB044816 WWPDB D_1000044816 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1ppg _pdbx_database_related.details 'leucocyte elastase' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2RG3 _pdbx_database_status.recvd_initial_deposition_date 2007-10-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Huang, W.' 1 'Yamamoto, Y.' 2 # _citation.id primary _citation.title 'X-ray snapshot of the mechanism of inactivation of human neutrophil elastase by 1,2,5-thiadiazolidin-3-one 1,1-dioxide derivatives.' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 51 _citation.page_first 2003 _citation.page_last 2008 _citation.year 2008 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18318470 _citation.pdbx_database_id_DOI 10.1021/jm700966p # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huang, W.' 1 ? primary 'Yamamoto, Y.' 2 ? primary 'Li, Y.' 3 ? primary 'Dou, D.' 4 ? primary 'Alliston, K.R.' 5 ? primary 'Hanzlik, R.P.' 6 ? primary 'Williams, T.D.' 7 ? primary 'Groutas, W.C.' 8 ? # _cell.entry_id 2RG3 _cell.length_a 73.200 _cell.length_b 73.200 _cell.length_c 70.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2RG3 _symmetry.space_group_name_H-M 'P 63' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Leukocyte elastase' 23525.244 1 3.4.21.37 ? ? ? 2 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose' 570.542 1 ? ? ? ? 3 non-polymer syn '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 238.305 1 ? ? ? ? 4 water nat water 18.015 121 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Elastase-2, Neutrophil elastase, PMN elastase, Bone marrow serine protease, Medullasin, Human leukocyte elastase, HLE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGY DPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTL VRGRQAGVCFGD(BG1)GSPLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ ; _entity_poly.pdbx_seq_one_letter_code_can ;IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGY DPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTL VRGRQAGVCFGDSGSPLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 VAL n 1 3 GLY n 1 4 GLY n 1 5 ARG n 1 6 ARG n 1 7 ALA n 1 8 ARG n 1 9 PRO n 1 10 HIS n 1 11 ALA n 1 12 TRP n 1 13 PRO n 1 14 PHE n 1 15 MET n 1 16 VAL n 1 17 SER n 1 18 LEU n 1 19 GLN n 1 20 LEU n 1 21 ARG n 1 22 GLY n 1 23 GLY n 1 24 HIS n 1 25 PHE n 1 26 CYS n 1 27 GLY n 1 28 ALA n 1 29 THR n 1 30 LEU n 1 31 ILE n 1 32 ALA n 1 33 PRO n 1 34 ASN n 1 35 PHE n 1 36 VAL n 1 37 MET n 1 38 SER n 1 39 ALA n 1 40 ALA n 1 41 HIS n 1 42 CYS n 1 43 VAL n 1 44 ALA n 1 45 ASN n 1 46 VAL n 1 47 ASN n 1 48 VAL n 1 49 ARG n 1 50 ALA n 1 51 VAL n 1 52 ARG n 1 53 VAL n 1 54 VAL n 1 55 LEU n 1 56 GLY n 1 57 ALA n 1 58 HIS n 1 59 ASN n 1 60 LEU n 1 61 SER n 1 62 ARG n 1 63 ARG n 1 64 GLU n 1 65 PRO n 1 66 THR n 1 67 ARG n 1 68 GLN n 1 69 VAL n 1 70 PHE n 1 71 ALA n 1 72 VAL n 1 73 GLN n 1 74 ARG n 1 75 ILE n 1 76 PHE n 1 77 GLU n 1 78 ASN n 1 79 GLY n 1 80 TYR n 1 81 ASP n 1 82 PRO n 1 83 VAL n 1 84 ASN n 1 85 LEU n 1 86 LEU n 1 87 ASN n 1 88 ASP n 1 89 ILE n 1 90 VAL n 1 91 ILE n 1 92 LEU n 1 93 GLN n 1 94 LEU n 1 95 ASN n 1 96 GLY n 1 97 SER n 1 98 ALA n 1 99 THR n 1 100 ILE n 1 101 ASN n 1 102 ALA n 1 103 ASN n 1 104 VAL n 1 105 GLN n 1 106 VAL n 1 107 ALA n 1 108 GLN n 1 109 LEU n 1 110 PRO n 1 111 ALA n 1 112 GLN n 1 113 GLY n 1 114 ARG n 1 115 ARG n 1 116 LEU n 1 117 GLY n 1 118 ASN n 1 119 GLY n 1 120 VAL n 1 121 GLN n 1 122 CYS n 1 123 LEU n 1 124 ALA n 1 125 MET n 1 126 GLY n 1 127 TRP n 1 128 GLY n 1 129 LEU n 1 130 LEU n 1 131 GLY n 1 132 ARG n 1 133 ASN n 1 134 ARG n 1 135 GLY n 1 136 ILE n 1 137 ALA n 1 138 SER n 1 139 VAL n 1 140 LEU n 1 141 GLN n 1 142 GLU n 1 143 LEU n 1 144 ASN n 1 145 VAL n 1 146 THR n 1 147 VAL n 1 148 VAL n 1 149 THR n 1 150 SER n 1 151 LEU n 1 152 CYS n 1 153 ARG n 1 154 ARG n 1 155 SER n 1 156 ASN n 1 157 VAL n 1 158 CYS n 1 159 THR n 1 160 LEU n 1 161 VAL n 1 162 ARG n 1 163 GLY n 1 164 ARG n 1 165 GLN n 1 166 ALA n 1 167 GLY n 1 168 VAL n 1 169 CYS n 1 170 PHE n 1 171 GLY n 1 172 ASP n 1 173 BG1 n 1 174 GLY n 1 175 SER n 1 176 PRO n 1 177 LEU n 1 178 VAL n 1 179 CYS n 1 180 ASN n 1 181 GLY n 1 182 LEU n 1 183 ILE n 1 184 HIS n 1 185 GLY n 1 186 ILE n 1 187 ALA n 1 188 SER n 1 189 PHE n 1 190 VAL n 1 191 ARG n 1 192 GLY n 1 193 GLY n 1 194 CYS n 1 195 ALA n 1 196 SER n 1 197 GLY n 1 198 LEU n 1 199 TYR n 1 200 PRO n 1 201 ASP n 1 202 ALA n 1 203 PHE n 1 204 ALA n 1 205 PRO n 1 206 VAL n 1 207 ALA n 1 208 GLN n 1 209 PHE n 1 210 VAL n 1 211 ASN n 1 212 TRP n 1 213 ILE n 1 214 ASP n 1 215 SER n 1 216 ILE n 1 217 ILE n 1 218 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ELA2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ELNE_HUMAN _struct_ref.pdbx_db_accession P08246 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGY DPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTL VRGRQAGVCFGDSGSPLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ ; _struct_ref.pdbx_align_begin 30 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2RG3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 218 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P08246 _struct_ref_seq.db_align_beg 30 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 247 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 16 _struct_ref_seq.pdbx_auth_seq_align_end 243 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2RG3 _struct_ref_seq_dif.mon_id BG1 _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 173 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P08246 _struct_ref_seq_dif.db_mon_id SER _struct_ref_seq_dif.pdbx_seq_db_seq_num 202 _struct_ref_seq_dif.details 'modified residue' _struct_ref_seq_dif.pdbx_auth_seq_num 195 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BG1 'L-peptide linking' n 'O-[(2S)-2-{methyl[(methylamino)sulfonyl]amino}pentanoyl]-L-serine' ? 'C10 H21 N3 O6 S' 311.355 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EPE non-polymer . '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' HEPES 'C8 H18 N2 O4 S' 238.305 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose ? 'C6 H12 O5' 164.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2RG3 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.34 _exptl_crystal.density_percent_sol 47.34 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'PEG, HEPES, pH 7.0, VAPOR DIFFUSION, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2006-03-09 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH3R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 2RG3 _reflns.observed_criterion_sigma_F 1 _reflns.observed_criterion_sigma_I 1 _reflns.d_resolution_high 1.8 _reflns.d_resolution_low 6.0 _reflns.number_all ? _reflns.number_obs 18706 _reflns.percent_possible_obs 91.4 _reflns.pdbx_Rmerge_I_obs 0.042 _reflns.pdbx_Rsym_value 0.042 _reflns.pdbx_netI_over_sigmaI 13.1 _reflns.B_iso_Wilson_estimate 25.0 _reflns.pdbx_redundancy 4.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 93.0 _reflns_shell.Rmerge_I_obs 0.327 _reflns_shell.pdbx_Rsym_value 0.327 _reflns_shell.meanI_over_sigI_obs 4.1 _reflns_shell.pdbx_redundancy 2.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1846 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2RG3 _refine.ls_d_res_high 1.8 _refine.ls_d_res_low 6.0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_ls_sigma_I 0 _refine.ls_number_reflns_all 19862 _refine.ls_number_reflns_obs 18706 _refine.ls_number_reflns_R_free ? _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.200 _refine.ls_R_factor_R_free ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2RG3 _refine_analyze.Luzzati_coordinate_error_obs 0.02 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1649 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 53 _refine_hist.number_atoms_solvent 121 _refine_hist.number_atoms_total 1823 _refine_hist.d_res_high 1.8 _refine_hist.d_res_low 6.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_angle_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.27 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 2RG3 _struct.title 'Covalent complex structure of elastase' _struct.pdbx_descriptor 'Leukocyte elastase (E.C.3.4.21.37)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2RG3 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'elastase, complex, covalent, Disease mutation, Glycoprotein, Hydrolase, Protease, Serine protease, Zymogen' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 39 ? ALA A 44 ? ALA A 55 ALA A 60 5 ? 6 HELX_P HELX_P2 2 ASN A 47 ? ALA A 50 C ASN A 63 ALA A 63 5 ? 4 HELX_P HELX_P3 3 PHE A 209 ? GLN A 218 ? PHE A 234 GLN A 243 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 26 SG ? ? ? 1_555 A CYS 42 SG ? ? A CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf2 disulf ? ? A CYS 122 SG ? ? ? 1_555 A CYS 179 SG ? ? A CYS 136 A CYS 201 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf3 disulf ? ? A CYS 152 SG ? ? ? 1_555 A CYS 158 SG ? ? A CYS 168 A CYS 182 1_555 ? ? ? ? ? ? ? 2.025 ? ? disulf4 disulf ? ? A CYS 169 SG ? ? ? 1_555 A CYS 194 SG ? ? A CYS 191 A CYS 220 1_555 ? ? ? ? ? ? ? 2.032 ? ? covale1 covale one ? A ASN 144 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 159 B NAG 1 1_555 ? ? ? ? ? ? ? 1.452 ? N-Glycosylation covale2 covale one ? A ASP 172 C ? ? ? 1_555 A BG1 173 N ? ? A ASP 194 A BG1 195 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale3 covale both ? A BG1 173 C ? ? ? 1_555 A GLY 174 N ? ? A BG1 195 A GLY 196 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.398 ? ? covale5 covale both ? B NAG . O6 ? ? ? 1_555 B FUC . C1 ? ? B NAG 1 B FUC 3 1_555 ? ? ? ? ? ? ? 1.402 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 5 ? ARG A 6 ? ARG A 20 ARG A 21 A 2 GLN A 141 ? VAL A 148 ? GLN A 156 VAL A 163 A 3 VAL A 157 ? LEU A 160 ? VAL A 181 LEU A 184 A 4 ASP A 201 ? PRO A 205 ? ASP A 226 PRO A 230 A 5 LEU A 182 ? PHE A 189 ? LEU A 208 PHE A 215 A 6 PRO A 176 ? CYS A 179 ? PRO A 198 CYS A 201 A 7 GLN A 121 ? GLY A 126 ? GLN A 135 GLY A 140 A 8 GLN A 141 ? VAL A 148 ? GLN A 156 VAL A 163 B 1 MET A 15 ? LEU A 20 ? MET A 30 LEU A 35 B 2 GLY A 23 ? ALA A 32 ? GLY A 39 ALA A 48 B 3 PHE A 35 ? SER A 38 ? PHE A 51 SER A 54 B 4 VAL A 90 ? LEU A 94 ? VAL A 104 LEU A 108 B 5 GLN A 68 ? GLU A 77 ? GLN A 81 GLU A 90 B 6 ARG A 52 ? LEU A 55 ? ARG A 65 LEU A 68 B 7 MET A 15 ? LEU A 20 ? MET A 30 LEU A 35 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 5 ? N ARG A 20 O GLU A 142 ? O GLU A 157 A 2 3 N THR A 146 ? N THR A 161 O LEU A 160 ? O LEU A 184 A 3 4 N THR A 159 ? N THR A 183 O ASP A 201 ? O ASP A 226 A 4 5 O ALA A 204 ? O ALA A 229 N ILE A 186 ? N ILE A 212 A 5 6 O LEU A 182 ? O LEU A 208 N CYS A 179 ? N CYS A 201 A 6 7 O VAL A 178 ? O VAL A 200 N LEU A 123 ? N LEU A 137 A 7 8 N ALA A 124 ? N ALA A 138 O LEU A 143 ? O LEU A 158 B 1 2 N LEU A 18 ? N LEU A 33 O CYS A 26 ? O CYS A 42 B 2 3 N THR A 29 ? N THR A 45 O MET A 37 ? O MET A 53 B 3 4 N VAL A 36 ? N VAL A 52 O LEU A 92 ? O LEU A 106 B 4 5 O GLN A 93 ? O GLN A 107 N GLN A 73 ? N GLN A 86 B 5 6 O PHE A 70 ? O PHE A 83 N VAL A 53 ? N VAL A 66 B 6 7 O ARG A 52 ? O ARG A 65 N GLN A 19 ? N GLN A 34 # _database_PDB_matrix.entry_id 2RG3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2RG3 _atom_sites.fract_transf_matrix[1][1] 0.013661 _atom_sites.fract_transf_matrix[1][2] 0.007887 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015775 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014265 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 16 16 ILE ILE A . n A 1 2 VAL 2 17 17 VAL VAL A . n A 1 3 GLY 3 18 18 GLY GLY A . n A 1 4 GLY 4 19 19 GLY GLY A . n A 1 5 ARG 5 20 20 ARG ARG A . n A 1 6 ARG 6 21 21 ARG ARG A . n A 1 7 ALA 7 22 22 ALA ALA A . n A 1 8 ARG 8 23 23 ARG ARG A . n A 1 9 PRO 9 24 24 PRO PRO A . n A 1 10 HIS 10 25 25 HIS HIS A . n A 1 11 ALA 11 26 26 ALA ALA A . n A 1 12 TRP 12 27 27 TRP TRP A . n A 1 13 PRO 13 28 28 PRO PRO A . n A 1 14 PHE 14 29 29 PHE PHE A . n A 1 15 MET 15 30 30 MET MET A . n A 1 16 VAL 16 31 31 VAL VAL A . n A 1 17 SER 17 32 32 SER SER A . n A 1 18 LEU 18 33 33 LEU LEU A . n A 1 19 GLN 19 34 34 GLN GLN A . n A 1 20 LEU 20 35 35 LEU LEU A . n A 1 21 ARG 21 36 36 ARG ARG A . n A 1 22 GLY 22 38 38 GLY GLY A . n A 1 23 GLY 23 39 39 GLY GLY A . n A 1 24 HIS 24 40 40 HIS HIS A . n A 1 25 PHE 25 41 41 PHE PHE A . n A 1 26 CYS 26 42 42 CYS CYS A . n A 1 27 GLY 27 43 43 GLY GLY A . n A 1 28 ALA 28 44 44 ALA ALA A . n A 1 29 THR 29 45 45 THR THR A . n A 1 30 LEU 30 46 46 LEU LEU A . n A 1 31 ILE 31 47 47 ILE ILE A . n A 1 32 ALA 32 48 48 ALA ALA A . n A 1 33 PRO 33 49 49 PRO PRO A . n A 1 34 ASN 34 50 50 ASN ASN A . n A 1 35 PHE 35 51 51 PHE PHE A . n A 1 36 VAL 36 52 52 VAL VAL A . n A 1 37 MET 37 53 53 MET MET A . n A 1 38 SER 38 54 54 SER SER A . n A 1 39 ALA 39 55 55 ALA ALA A . n A 1 40 ALA 40 56 56 ALA ALA A . n A 1 41 HIS 41 57 57 HIS HIS A . n A 1 42 CYS 42 58 58 CYS CYS A . n A 1 43 VAL 43 59 59 VAL VAL A . n A 1 44 ALA 44 60 60 ALA ALA A . n A 1 45 ASN 45 61 61 ASN ASN A . n A 1 46 VAL 46 62 62 VAL VAL A . n A 1 47 ASN 47 63 63 ASN ASN A . n A 1 48 VAL 48 63 63 VAL VAL A A n A 1 49 ARG 49 63 63 ARG ARG A B n A 1 50 ALA 50 63 63 ALA ALA A C n A 1 51 VAL 51 64 64 VAL VAL A . n A 1 52 ARG 52 65 65 ARG ARG A . n A 1 53 VAL 53 66 66 VAL VAL A . n A 1 54 VAL 54 67 67 VAL VAL A . n A 1 55 LEU 55 68 68 LEU LEU A . n A 1 56 GLY 56 69 69 GLY GLY A . n A 1 57 ALA 57 70 70 ALA ALA A . n A 1 58 HIS 58 71 71 HIS HIS A . n A 1 59 ASN 59 72 72 ASN ASN A . n A 1 60 LEU 60 73 73 LEU LEU A . n A 1 61 SER 61 74 74 SER SER A . n A 1 62 ARG 62 75 75 ARG ARG A . n A 1 63 ARG 63 76 76 ARG ARG A . n A 1 64 GLU 64 77 77 GLU GLU A . n A 1 65 PRO 65 78 78 PRO PRO A . n A 1 66 THR 66 79 79 THR THR A . n A 1 67 ARG 67 80 80 ARG ARG A . n A 1 68 GLN 68 81 81 GLN GLN A . n A 1 69 VAL 69 82 82 VAL VAL A . n A 1 70 PHE 70 83 83 PHE PHE A . n A 1 71 ALA 71 84 84 ALA ALA A . n A 1 72 VAL 72 85 85 VAL VAL A . n A 1 73 GLN 73 86 86 GLN GLN A . n A 1 74 ARG 74 87 87 ARG ARG A . n A 1 75 ILE 75 88 88 ILE ILE A . n A 1 76 PHE 76 89 89 PHE PHE A . n A 1 77 GLU 77 90 90 GLU GLU A . n A 1 78 ASN 78 92 92 ASN ASN A . n A 1 79 GLY 79 93 93 GLY GLY A . n A 1 80 TYR 80 94 94 TYR TYR A . n A 1 81 ASP 81 95 95 ASP ASP A . n A 1 82 PRO 82 96 96 PRO PRO A . n A 1 83 VAL 83 97 97 VAL VAL A . n A 1 84 ASN 84 98 98 ASN ASN A . n A 1 85 LEU 85 99 99 LEU LEU A . n A 1 86 LEU 86 100 100 LEU LEU A . n A 1 87 ASN 87 101 101 ASN ASN A . n A 1 88 ASP 88 102 102 ASP ASP A . n A 1 89 ILE 89 103 103 ILE ILE A . n A 1 90 VAL 90 104 104 VAL VAL A . n A 1 91 ILE 91 105 105 ILE ILE A . n A 1 92 LEU 92 106 106 LEU LEU A . n A 1 93 GLN 93 107 107 GLN GLN A . n A 1 94 LEU 94 108 108 LEU LEU A . n A 1 95 ASN 95 109 109 ASN ASN A . n A 1 96 GLY 96 110 110 GLY GLY A . n A 1 97 SER 97 111 111 SER SER A . n A 1 98 ALA 98 112 112 ALA ALA A . n A 1 99 THR 99 113 113 THR THR A . n A 1 100 ILE 100 114 114 ILE ILE A . n A 1 101 ASN 101 115 115 ASN ASN A . n A 1 102 ALA 102 116 116 ALA ALA A . n A 1 103 ASN 103 117 117 ASN ASN A . n A 1 104 VAL 104 118 118 VAL VAL A . n A 1 105 GLN 105 119 119 GLN GLN A . n A 1 106 VAL 106 120 120 VAL VAL A . n A 1 107 ALA 107 121 121 ALA ALA A . n A 1 108 GLN 108 122 122 GLN GLN A . n A 1 109 LEU 109 123 123 LEU LEU A . n A 1 110 PRO 110 124 124 PRO PRO A . n A 1 111 ALA 111 125 125 ALA ALA A . n A 1 112 GLN 112 126 126 GLN GLN A . n A 1 113 GLY 113 127 127 GLY GLY A . n A 1 114 ARG 114 128 128 ARG ARG A . n A 1 115 ARG 115 129 129 ARG ARG A . n A 1 116 LEU 116 130 130 LEU LEU A . n A 1 117 GLY 117 131 131 GLY GLY A . n A 1 118 ASN 118 132 132 ASN ASN A . n A 1 119 GLY 119 133 133 GLY GLY A . n A 1 120 VAL 120 134 134 VAL VAL A . n A 1 121 GLN 121 135 135 GLN GLN A . n A 1 122 CYS 122 136 136 CYS CYS A . n A 1 123 LEU 123 137 137 LEU LEU A . n A 1 124 ALA 124 138 138 ALA ALA A . n A 1 125 MET 125 139 139 MET MET A . n A 1 126 GLY 126 140 140 GLY GLY A . n A 1 127 TRP 127 141 141 TRP TRP A . n A 1 128 GLY 128 142 142 GLY GLY A . n A 1 129 LEU 129 143 143 LEU LEU A . n A 1 130 LEU 130 144 144 LEU LEU A . n A 1 131 GLY 131 145 145 GLY GLY A . n A 1 132 ARG 132 146 146 ARG ARG A . n A 1 133 ASN 133 147 147 ASN ASN A . n A 1 134 ARG 134 148 148 ARG ARG A . n A 1 135 GLY 135 150 150 GLY GLY A . n A 1 136 ILE 136 151 151 ILE ILE A . n A 1 137 ALA 137 152 152 ALA ALA A . n A 1 138 SER 138 153 153 SER SER A . n A 1 139 VAL 139 154 154 VAL VAL A . n A 1 140 LEU 140 155 155 LEU LEU A . n A 1 141 GLN 141 156 156 GLN GLN A . n A 1 142 GLU 142 157 157 GLU GLU A . n A 1 143 LEU 143 158 158 LEU LEU A . n A 1 144 ASN 144 159 159 ASN ASN A . n A 1 145 VAL 145 160 160 VAL VAL A . n A 1 146 THR 146 161 161 THR THR A . n A 1 147 VAL 147 162 162 VAL VAL A . n A 1 148 VAL 148 163 163 VAL VAL A . n A 1 149 THR 149 164 164 THR THR A . n A 1 150 SER 150 165 165 SER SER A . n A 1 151 LEU 151 166 166 LEU LEU A . n A 1 152 CYS 152 168 168 CYS CYS A . n A 1 153 ARG 153 177 177 ARG ARG A . n A 1 154 ARG 154 178 178 ARG ARG A . n A 1 155 SER 155 179 179 SER SER A . n A 1 156 ASN 156 180 180 ASN ASN A . n A 1 157 VAL 157 181 181 VAL VAL A . n A 1 158 CYS 158 182 182 CYS CYS A . n A 1 159 THR 159 183 183 THR THR A . n A 1 160 LEU 160 184 184 LEU LEU A . n A 1 161 VAL 161 185 185 VAL VAL A . n A 1 162 ARG 162 186 186 ARG ARG A . n A 1 163 GLY 163 186 186 GLY GLY A A n A 1 164 ARG 164 186 186 ARG ARG A B n A 1 165 GLN 165 187 187 GLN GLN A . n A 1 166 ALA 166 188 188 ALA ALA A . n A 1 167 GLY 167 189 189 GLY GLY A . n A 1 168 VAL 168 190 190 VAL VAL A . n A 1 169 CYS 169 191 191 CYS CYS A . n A 1 170 PHE 170 192 192 PHE PHE A . n A 1 171 GLY 171 193 193 GLY GLY A . n A 1 172 ASP 172 194 194 ASP ASP A . n A 1 173 BG1 173 195 195 BG1 BG1 A . n A 1 174 GLY 174 196 196 GLY GLY A . n A 1 175 SER 175 197 197 SER SER A . n A 1 176 PRO 176 198 198 PRO PRO A . n A 1 177 LEU 177 199 199 LEU LEU A . n A 1 178 VAL 178 200 200 VAL VAL A . n A 1 179 CYS 179 201 201 CYS CYS A . n A 1 180 ASN 180 202 202 ASN ASN A . n A 1 181 GLY 181 207 207 GLY GLY A . n A 1 182 LEU 182 208 208 LEU LEU A . n A 1 183 ILE 183 209 209 ILE ILE A . n A 1 184 HIS 184 210 210 HIS HIS A . n A 1 185 GLY 185 211 211 GLY GLY A . n A 1 186 ILE 186 212 212 ILE ILE A . n A 1 187 ALA 187 213 213 ALA ALA A . n A 1 188 SER 188 214 214 SER SER A . n A 1 189 PHE 189 215 215 PHE PHE A . n A 1 190 VAL 190 216 216 VAL VAL A . n A 1 191 ARG 191 217 217 ARG ARG A . n A 1 192 GLY 192 218 218 GLY GLY A . n A 1 193 GLY 193 219 219 GLY GLY A . n A 1 194 CYS 194 220 220 CYS CYS A . n A 1 195 ALA 195 220 220 ALA ALA A A n A 1 196 SER 196 221 221 SER SER A . n A 1 197 GLY 197 222 222 GLY GLY A . n A 1 198 LEU 198 223 223 LEU LEU A . n A 1 199 TYR 199 224 224 TYR TYR A . n A 1 200 PRO 200 225 225 PRO PRO A . n A 1 201 ASP 201 226 226 ASP ASP A . n A 1 202 ALA 202 227 227 ALA ALA A . n A 1 203 PHE 203 228 228 PHE PHE A . n A 1 204 ALA 204 229 229 ALA ALA A . n A 1 205 PRO 205 230 230 PRO PRO A . n A 1 206 VAL 206 231 231 VAL VAL A . n A 1 207 ALA 207 232 232 ALA ALA A . n A 1 208 GLN 208 233 233 GLN GLN A . n A 1 209 PHE 209 234 234 PHE PHE A . n A 1 210 VAL 210 235 235 VAL VAL A . n A 1 211 ASN 211 236 236 ASN ASN A . n A 1 212 TRP 212 237 237 TRP TRP A . n A 1 213 ILE 213 238 238 ILE ILE A . n A 1 214 ASP 214 239 239 ASP ASP A . n A 1 215 SER 215 240 240 SER SER A . n A 1 216 ILE 216 241 241 ILE ILE A . n A 1 217 ILE 217 242 242 ILE ILE A . n A 1 218 GLN 218 243 243 GLN GLN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EPE 1 404 404 EPE EPE A . D 4 HOH 1 405 405 HOH HOH A . D 4 HOH 2 406 406 HOH HOH A . D 4 HOH 3 407 407 HOH HOH A . D 4 HOH 4 408 408 HOH HOH A . D 4 HOH 5 409 409 HOH HOH A . D 4 HOH 6 410 410 HOH HOH A . D 4 HOH 7 411 411 HOH HOH A . D 4 HOH 8 412 412 HOH HOH A . D 4 HOH 9 413 413 HOH HOH A . D 4 HOH 10 414 414 HOH HOH A . D 4 HOH 11 415 415 HOH HOH A . D 4 HOH 12 416 416 HOH HOH A . D 4 HOH 13 417 417 HOH HOH A . D 4 HOH 14 418 418 HOH HOH A . D 4 HOH 15 419 419 HOH HOH A . D 4 HOH 16 420 420 HOH HOH A . D 4 HOH 17 421 421 HOH HOH A . D 4 HOH 18 422 422 HOH HOH A . D 4 HOH 19 423 423 HOH HOH A . D 4 HOH 20 424 424 HOH HOH A . D 4 HOH 21 425 425 HOH HOH A . D 4 HOH 22 426 426 HOH HOH A . D 4 HOH 23 427 427 HOH HOH A . D 4 HOH 24 428 428 HOH HOH A . D 4 HOH 25 429 429 HOH HOH A . D 4 HOH 26 430 430 HOH HOH A . D 4 HOH 27 431 431 HOH HOH A . D 4 HOH 28 432 432 HOH HOH A . D 4 HOH 29 433 433 HOH HOH A . D 4 HOH 30 434 434 HOH HOH A . D 4 HOH 31 435 435 HOH HOH A . D 4 HOH 32 436 436 HOH HOH A . D 4 HOH 33 437 437 HOH HOH A . D 4 HOH 34 438 438 HOH HOH A . D 4 HOH 35 439 439 HOH HOH A . D 4 HOH 36 440 440 HOH HOH A . D 4 HOH 37 441 441 HOH HOH A . D 4 HOH 38 442 442 HOH HOH A . D 4 HOH 39 443 443 HOH HOH A . D 4 HOH 40 444 444 HOH HOH A . D 4 HOH 41 445 445 HOH HOH A . D 4 HOH 42 446 446 HOH HOH A . D 4 HOH 43 447 447 HOH HOH A . D 4 HOH 44 448 448 HOH HOH A . D 4 HOH 45 449 449 HOH HOH A . D 4 HOH 46 450 450 HOH HOH A . D 4 HOH 47 451 451 HOH HOH A . D 4 HOH 48 452 452 HOH HOH A . D 4 HOH 49 453 453 HOH HOH A . D 4 HOH 50 454 454 HOH HOH A . D 4 HOH 51 455 455 HOH HOH A . D 4 HOH 52 456 456 HOH HOH A . D 4 HOH 53 457 457 HOH HOH A . D 4 HOH 54 458 458 HOH HOH A . D 4 HOH 55 459 459 HOH HOH A . D 4 HOH 56 460 460 HOH HOH A . D 4 HOH 57 461 461 HOH HOH A . D 4 HOH 58 462 462 HOH HOH A . D 4 HOH 59 463 463 HOH HOH A . D 4 HOH 60 464 464 HOH HOH A . D 4 HOH 61 465 465 HOH HOH A . D 4 HOH 62 466 466 HOH HOH A . D 4 HOH 63 467 467 HOH HOH A . D 4 HOH 64 468 468 HOH HOH A . D 4 HOH 65 469 469 HOH HOH A . D 4 HOH 66 470 470 HOH HOH A . D 4 HOH 67 471 471 HOH HOH A . D 4 HOH 68 472 472 HOH HOH A . D 4 HOH 69 473 473 HOH HOH A . D 4 HOH 70 474 474 HOH HOH A . D 4 HOH 71 475 475 HOH HOH A . D 4 HOH 72 476 476 HOH HOH A . D 4 HOH 73 477 477 HOH HOH A . D 4 HOH 74 478 478 HOH HOH A . D 4 HOH 75 479 479 HOH HOH A . D 4 HOH 76 480 480 HOH HOH A . D 4 HOH 77 481 481 HOH HOH A . D 4 HOH 78 482 482 HOH HOH A . D 4 HOH 79 483 483 HOH HOH A . D 4 HOH 80 484 484 HOH HOH A . D 4 HOH 81 485 485 HOH HOH A . D 4 HOH 82 486 486 HOH HOH A . D 4 HOH 83 487 487 HOH HOH A . D 4 HOH 84 488 488 HOH HOH A . D 4 HOH 85 489 489 HOH HOH A . D 4 HOH 86 490 490 HOH HOH A . D 4 HOH 87 491 491 HOH HOH A . D 4 HOH 88 492 492 HOH HOH A . D 4 HOH 89 493 493 HOH HOH A . D 4 HOH 90 494 494 HOH HOH A . D 4 HOH 91 495 495 HOH HOH A . D 4 HOH 92 496 496 HOH HOH A . D 4 HOH 93 497 497 HOH HOH A . D 4 HOH 94 498 498 HOH HOH A . D 4 HOH 95 499 499 HOH HOH A . D 4 HOH 96 500 500 HOH HOH A . D 4 HOH 97 501 501 HOH HOH A . D 4 HOH 98 502 502 HOH HOH A . D 4 HOH 99 503 503 HOH HOH A . D 4 HOH 100 504 504 HOH HOH A . D 4 HOH 101 505 505 HOH HOH A . D 4 HOH 102 506 506 HOH HOH A . D 4 HOH 103 507 507 HOH HOH A . D 4 HOH 104 508 508 HOH HOH A . D 4 HOH 105 509 509 HOH HOH A . D 4 HOH 106 510 510 HOH HOH A . D 4 HOH 107 511 511 HOH HOH A . D 4 HOH 108 512 512 HOH HOH A . D 4 HOH 109 513 513 HOH HOH A . D 4 HOH 110 514 514 HOH HOH A . D 4 HOH 111 515 515 HOH HOH A . D 4 HOH 112 516 516 HOH HOH A . D 4 HOH 113 517 517 HOH HOH A . D 4 HOH 114 518 518 HOH HOH A . D 4 HOH 115 519 519 HOH HOH A . D 4 HOH 116 520 520 HOH HOH A . D 4 HOH 117 521 521 HOH HOH A . D 4 HOH 118 522 522 HOH HOH A . D 4 HOH 119 523 523 HOH HOH A . D 4 HOH 120 524 524 HOH HOH A . D 4 HOH 121 525 525 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 144 A ASN 159 ? ASN 'GLYCOSYLATION SITE' 2 A BG1 173 A BG1 195 ? SER ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-07-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Derived calculations' 7 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' pdbx_branch_scheme 5 3 'Structure model' pdbx_chem_comp_identifier 6 3 'Structure model' pdbx_entity_branch 7 3 'Structure model' pdbx_entity_branch_descriptor 8 3 'Structure model' pdbx_entity_branch_link 9 3 'Structure model' pdbx_entity_branch_list 10 3 'Structure model' pdbx_entity_nonpoly 11 3 'Structure model' pdbx_nonpoly_scheme 12 3 'Structure model' pdbx_struct_assembly_gen 13 3 'Structure model' struct_asym 14 3 'Structure model' struct_conn 15 3 'Structure model' struct_ref_seq_dif 16 3 'Structure model' struct_site 17 3 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.auth_asym_id' 6 3 'Structure model' '_atom_site.auth_atom_id' 7 3 'Structure model' '_atom_site.auth_comp_id' 8 3 'Structure model' '_atom_site.auth_seq_id' 9 3 'Structure model' '_atom_site.label_asym_id' 10 3 'Structure model' '_atom_site.label_atom_id' 11 3 'Structure model' '_atom_site.label_comp_id' 12 3 'Structure model' '_atom_site.label_entity_id' 13 3 'Structure model' '_atom_site.type_symbol' 14 3 'Structure model' '_chem_comp.name' 15 3 'Structure model' '_chem_comp.type' 16 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 17 3 'Structure model' '_struct_conn.pdbx_dist_value' 18 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 3 'Structure model' '_struct_conn.pdbx_role' 20 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 21 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 34 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 CNS refinement . ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 28 ? ? -58.52 -8.50 2 1 HIS A 71 ? ? -139.89 -58.71 3 1 ARG A 146 ? ? -74.37 23.29 4 1 ASN A 147 ? ? 166.73 63.08 5 1 ARG A 148 ? ? -141.64 -17.61 6 1 LEU A 223 ? ? -122.96 -57.82 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 A NAG 401 n B 2 NAG 2 B NAG 2 A NAG 403 n B 2 FUC 3 B FUC 3 A FUC 402 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-1-2/a4-b1_a6-c1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}[(6+1)][a-L-Fucp]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 FUC C1 O1 1 NAG O6 HO6 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 FUC 3 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' EPE 4 water HOH #