HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 02-OCT-07 2RG4 TITLE CRYSTAL STRUCTURE OF THE UNCHARACTERIZED PROTEIN Q2CBJ1_9RHOB FROM TITLE 2 OCEANICOLA GRANULOSUS HTCC2516 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OCEANICOLA GRANULOSUS; SOURCE 3 ORGANISM_TAXID: 314256; SOURCE 4 STRAIN: HTCC2516; SOURCE 5 GENE: OG2516_08446; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS RHODOBACTERALES, OCEANICOLA GRANULOSUS HTCC2516, Q2CBJ1_9RHOB, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NEW YORK KEYWDS 3 SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, UNKNOWN KEYWDS 4 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,R.TORO,A.J.MEYER,J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW AUTHOR 2 YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 8 21-FEB-24 2RG4 1 REMARK REVDAT 7 03-FEB-21 2RG4 1 AUTHOR JRNL REMARK SEQADV REVDAT 7 2 1 LINK REVDAT 6 14-NOV-18 2RG4 1 AUTHOR REVDAT 5 25-OCT-17 2RG4 1 REMARK REVDAT 4 13-JUL-11 2RG4 1 VERSN REVDAT 3 24-FEB-09 2RG4 1 VERSN REVDAT 2 04-DEC-07 2RG4 1 AUTHOR JRNL REVDAT 1 23-OCT-07 2RG4 0 JRNL AUTH V.N.MALASHKEVICH,R.TORO,A.J.MEYER,J.M.SAUDER,S.K.BURLEY, JRNL AUTH 2 S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF THE UNCHARACTERIZED PROTEIN JRNL TITL 2 Q2CBJ1_9RHOB FROM OCEANICOLA GRANULOSUS HTCC2516. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 31410 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1584 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1785 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.4310 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.5610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3260 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 347 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.197 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.189 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.155 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.542 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3372 ; 0.023 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4596 ; 2.343 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 414 ;12.014 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;39.798 ;23.250 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 522 ;18.959 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;19.183 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 486 ; 0.173 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2638 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1561 ; 0.242 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2231 ; 0.320 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 255 ; 0.208 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 162 ; 0.227 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 48 ; 0.195 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2117 ; 2.142 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3320 ; 6.086 ;20.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1454 ;12.577 ;20.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1274 ; 6.550 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 207 REMARK 3 RESIDUE RANGE : A 2 A 207 REMARK 3 ORIGIN FOR THE GROUP (A): 34.7741 33.8865 66.6950 REMARK 3 T TENSOR REMARK 3 T11: -0.0278 T22: -0.0112 REMARK 3 T33: -0.0425 T12: 0.0076 REMARK 3 T13: 0.0096 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.4867 L22: 0.2625 REMARK 3 L33: 0.2828 L12: 0.0779 REMARK 3 L13: 0.0923 L23: -0.0820 REMARK 3 S TENSOR REMARK 3 S11: 0.0177 S12: 0.0916 S13: 0.0029 REMARK 3 S21: -0.0456 S22: 0.0032 S23: -0.0303 REMARK 3 S31: -0.0086 S32: 0.0149 S33: -0.0209 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE BIJVOET DIFFERENCES WERE USED IN REMARK 3 PHASING. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 2RG4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044817. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97900 REMARK 200 MONOCHROMATOR : X29 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70428 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.66800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, 0.3M MAGNESIUM FORMATE, REMARK 280 PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.33000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.73800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.73800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 123.49500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.73800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.73800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.16500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.73800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.73800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 123.49500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.73800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.73800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.16500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 82.33000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15320 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 164.66000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 208 REMARK 465 GLU A 209 REMARK 465 GLY A 210 REMARK 465 HIS A 211 REMARK 465 HIS A 212 REMARK 465 HIS A 213 REMARK 465 HIS A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 465 MET B 1 REMARK 465 GLY B 208 REMARK 465 GLU B 209 REMARK 465 GLY B 210 REMARK 465 HIS B 211 REMARK 465 HIS B 212 REMARK 465 HIS B 213 REMARK 465 HIS B 214 REMARK 465 HIS B 215 REMARK 465 HIS B 216 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 240 O HOH B 287 1.80 REMARK 500 O HOH B 246 O HOH B 333 1.99 REMARK 500 O ARG B 158 N GLY B 160 2.04 REMARK 500 CE1 HIS A 119 O HOH A 410 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 182 O HOH B 283 7556 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 23 N - CA - C ANGL. DEV. = -22.9 DEGREES REMARK 500 GLY A 56 C - N - CA ANGL. DEV. = -13.4 DEGREES REMARK 500 PRO A 135 C - N - CA ANGL. DEV. = 26.5 DEGREES REMARK 500 PRO A 135 C - N - CD ANGL. DEV. = -28.9 DEGREES REMARK 500 PRO A 135 N - CA - C ANGL. DEV. = 19.2 DEGREES REMARK 500 GLU A 136 N - CA - C ANGL. DEV. = -18.1 DEGREES REMARK 500 ARG A 162 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 186 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 TYR B 57 N - CA - CB ANGL. DEV. = 14.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 42 68.75 -102.90 REMARK 500 ASP A 96 -134.11 52.60 REMARK 500 PRO A 135 -30.90 40.34 REMARK 500 GLU A 136 5.70 -158.97 REMARK 500 THR A 138 -129.30 -132.00 REMARK 500 TYR B 57 104.39 -169.06 REMARK 500 ASP B 96 -131.00 65.50 REMARK 500 GLU B 112 133.81 -38.75 REMARK 500 THR B 138 144.34 55.20 REMARK 500 LYS B 159 39.48 -42.55 REMARK 500 GLU B 163 46.50 -73.41 REMARK 500 MET B 191 121.90 -39.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 22 GLY A 23 138.19 REMARK 500 GLY A 56 TYR A 57 149.97 REMARK 500 MET A 134 PRO A 135 93.60 REMARK 500 GLU A 136 GLY A 137 141.04 REMARK 500 GLY B 56 TYR B 57 -113.33 REMARK 500 LEU B 91 GLU B 92 -42.97 REMARK 500 PRO B 135 GLU B 136 78.68 REMARK 500 GLU B 136 GLY B 137 -146.70 REMARK 500 GLY B 137 THR B 138 38.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 217 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 119 NE2 REMARK 620 2 HIS A 121 NE2 89.1 REMARK 620 3 HIS A 187 NE2 98.5 97.2 REMARK 620 4 HOH A 292 O 172.4 87.7 88.8 REMARK 620 5 HOH A 294 O 81.3 86.2 176.6 91.6 REMARK 620 6 HOH A 414 O 102.3 166.2 89.0 80.1 87.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 217 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 119 NE2 REMARK 620 2 HIS B 121 NE2 86.3 REMARK 620 3 HIS B 187 NE2 93.9 108.3 REMARK 620 4 HOH B 245 O 85.4 86.6 165.0 REMARK 620 5 HOH B 367 O 171.3 90.5 94.9 86.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 217 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-10416F RELATED DB: TARGETDB DBREF 2RG4 A 4 208 UNP Q2CBJ1 Q2CBJ1_9RHOB 2 206 DBREF 2RG4 B 4 208 UNP Q2CBJ1 Q2CBJ1_9RHOB 2 206 SEQADV 2RG4 MET A 1 UNP Q2CBJ1 EXPRESSION TAG SEQADV 2RG4 SER A 2 UNP Q2CBJ1 EXPRESSION TAG SEQADV 2RG4 LEU A 3 UNP Q2CBJ1 EXPRESSION TAG SEQADV 2RG4 GLU A 209 UNP Q2CBJ1 EXPRESSION TAG SEQADV 2RG4 GLY A 210 UNP Q2CBJ1 EXPRESSION TAG SEQADV 2RG4 HIS A 211 UNP Q2CBJ1 EXPRESSION TAG SEQADV 2RG4 HIS A 212 UNP Q2CBJ1 EXPRESSION TAG SEQADV 2RG4 HIS A 213 UNP Q2CBJ1 EXPRESSION TAG SEQADV 2RG4 HIS A 214 UNP Q2CBJ1 EXPRESSION TAG SEQADV 2RG4 HIS A 215 UNP Q2CBJ1 EXPRESSION TAG SEQADV 2RG4 HIS A 216 UNP Q2CBJ1 EXPRESSION TAG SEQADV 2RG4 MET B 1 UNP Q2CBJ1 EXPRESSION TAG SEQADV 2RG4 SER B 2 UNP Q2CBJ1 EXPRESSION TAG SEQADV 2RG4 LEU B 3 UNP Q2CBJ1 EXPRESSION TAG SEQADV 2RG4 GLU B 209 UNP Q2CBJ1 EXPRESSION TAG SEQADV 2RG4 GLY B 210 UNP Q2CBJ1 EXPRESSION TAG SEQADV 2RG4 HIS B 211 UNP Q2CBJ1 EXPRESSION TAG SEQADV 2RG4 HIS B 212 UNP Q2CBJ1 EXPRESSION TAG SEQADV 2RG4 HIS B 213 UNP Q2CBJ1 EXPRESSION TAG SEQADV 2RG4 HIS B 214 UNP Q2CBJ1 EXPRESSION TAG SEQADV 2RG4 HIS B 215 UNP Q2CBJ1 EXPRESSION TAG SEQADV 2RG4 HIS B 216 UNP Q2CBJ1 EXPRESSION TAG SEQRES 1 A 216 MET SER LEU ALA GLN ILE LYS SER LEU PHE ALA THR ARG SEQRES 2 A 216 LEU TYR HIS ALA PRO LEU SER GLU HIS GLY PRO ALA LEU SEQRES 3 A 216 ASP PRO ALA GLU PHE ALA ALA SER CYS TYR SER ILE ALA SEQRES 4 A 216 GLU ASP ASP ASP ALA GLY GLN GLU TRP CYS GLU ARG GLU SEQRES 5 A 216 GLY TYR PRO GLY TYR THR SER TYR ALA SER LEU THR ASP SEQRES 6 A 216 LEU PRO TRP ARG PHE PRO ILE PHE ALA ASP LEU VAL LYS SEQRES 7 A 216 SER LEU ASP ALA HIS VAL ALA ALA PHE ALA GLU ASP LEU SEQRES 8 A 216 GLU PHE GLU LEU ASP GLY LYS ALA LEU ARG LEU GLU ASP SEQRES 9 A 216 ILE TRP ILE ASN ILE LEU PRO GLU GLY GLY VAL HIS GLY SEQRES 10 A 216 SER HIS ILE HIS PRO HIS SER VAL ILE SER GLY THR THR SEQRES 11 A 216 TYR VAL ALA MET PRO GLU GLY THR SER ALA LEU LYS LEU SEQRES 12 A 216 GLU ASP PRO ARG LEU PRO PHE MET MET ALA ALA PRO THR SEQRES 13 A 216 ARG ARG LYS GLY ALA ARG GLU GLU LEU ARG THR PHE ARG SEQRES 14 A 216 SER VAL ALA PRO LYS VAL GLY ASP VAL LEU LEU TRP GLU SEQRES 15 A 216 SER TRP LEU ARG HIS GLU VAL PRO MET ASN MET ALA GLU SEQRES 16 A 216 GLU ASP ARG ILE SER VAL SER PHE ASN TYR ALA TRP GLY SEQRES 17 A 216 GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 216 MET SER LEU ALA GLN ILE LYS SER LEU PHE ALA THR ARG SEQRES 2 B 216 LEU TYR HIS ALA PRO LEU SER GLU HIS GLY PRO ALA LEU SEQRES 3 B 216 ASP PRO ALA GLU PHE ALA ALA SER CYS TYR SER ILE ALA SEQRES 4 B 216 GLU ASP ASP ASP ALA GLY GLN GLU TRP CYS GLU ARG GLU SEQRES 5 B 216 GLY TYR PRO GLY TYR THR SER TYR ALA SER LEU THR ASP SEQRES 6 B 216 LEU PRO TRP ARG PHE PRO ILE PHE ALA ASP LEU VAL LYS SEQRES 7 B 216 SER LEU ASP ALA HIS VAL ALA ALA PHE ALA GLU ASP LEU SEQRES 8 B 216 GLU PHE GLU LEU ASP GLY LYS ALA LEU ARG LEU GLU ASP SEQRES 9 B 216 ILE TRP ILE ASN ILE LEU PRO GLU GLY GLY VAL HIS GLY SEQRES 10 B 216 SER HIS ILE HIS PRO HIS SER VAL ILE SER GLY THR THR SEQRES 11 B 216 TYR VAL ALA MET PRO GLU GLY THR SER ALA LEU LYS LEU SEQRES 12 B 216 GLU ASP PRO ARG LEU PRO PHE MET MET ALA ALA PRO THR SEQRES 13 B 216 ARG ARG LYS GLY ALA ARG GLU GLU LEU ARG THR PHE ARG SEQRES 14 B 216 SER VAL ALA PRO LYS VAL GLY ASP VAL LEU LEU TRP GLU SEQRES 15 B 216 SER TRP LEU ARG HIS GLU VAL PRO MET ASN MET ALA GLU SEQRES 16 B 216 GLU ASP ARG ILE SER VAL SER PHE ASN TYR ALA TRP GLY SEQRES 17 B 216 GLU GLY HIS HIS HIS HIS HIS HIS HET FE A 217 1 HET FE B 217 1 HETNAM FE FE (III) ION FORMUL 3 FE 2(FE 3+) FORMUL 5 HOH *347(H2 O) HELIX 1 1 SER A 20 HIS A 22 5 3 HELIX 2 2 ASP A 27 ASP A 42 1 16 HELIX 3 3 ASP A 42 GLY A 53 1 12 HELIX 4 4 ASP A 65 PHE A 70 1 6 HELIX 5 5 PHE A 70 LEU A 91 1 22 HELIX 6 6 ARG A 147 MET A 151 5 5 HELIX 7 7 ARG A 162 ARG A 166 5 5 HELIX 8 8 SER B 20 HIS B 22 5 3 HELIX 9 9 ASP B 27 ASP B 42 1 16 HELIX 10 10 ASP B 42 GLU B 52 1 11 HELIX 11 11 ASP B 65 PHE B 70 1 6 HELIX 12 12 PHE B 70 LEU B 91 1 22 HELIX 13 13 ARG B 147 MET B 151 5 5 SHEET 1 A 6 TYR A 15 PRO A 18 0 SHEET 2 A 6 ASP A 177 GLU A 182 -1 O VAL A 178 N ALA A 17 SHEET 3 A 6 ILE A 126 ALA A 133 -1 N SER A 127 O TRP A 181 SHEET 4 A 6 ARG A 198 ALA A 206 -1 O TYR A 205 N ILE A 126 SHEET 5 A 6 ARG A 101 LEU A 110 -1 N GLU A 103 O ASN A 204 SHEET 6 A 6 TYR A 57 THR A 58 -1 N TYR A 57 O ILE A 109 SHEET 1 B 4 HIS A 116 HIS A 119 0 SHEET 2 B 4 HIS A 187 VAL A 189 -1 O VAL A 189 N HIS A 116 SHEET 3 B 4 LEU A 141 GLU A 144 -1 N LYS A 142 O GLU A 188 SHEET 4 B 4 PHE A 168 VAL A 171 -1 O VAL A 171 N LEU A 141 SHEET 1 C 6 TYR B 15 PRO B 18 0 SHEET 2 C 6 ASP B 177 GLU B 182 -1 O VAL B 178 N ALA B 17 SHEET 3 C 6 ILE B 126 ALA B 133 -1 N SER B 127 O TRP B 181 SHEET 4 C 6 ARG B 198 ALA B 206 -1 O VAL B 201 N THR B 130 SHEET 5 C 6 ARG B 101 LEU B 110 -1 N ASN B 108 O SER B 200 SHEET 6 C 6 TYR B 57 THR B 58 -1 N TYR B 57 O ILE B 109 SHEET 1 D 4 HIS B 116 HIS B 119 0 SHEET 2 D 4 HIS B 187 VAL B 189 -1 O VAL B 189 N HIS B 116 SHEET 3 D 4 LEU B 141 GLU B 144 -1 N LYS B 142 O GLU B 188 SHEET 4 D 4 PHE B 168 VAL B 171 -1 O ARG B 169 N LEU B 143 LINK NE2 HIS A 119 FE FE A 217 1555 1555 2.06 LINK NE2 HIS A 121 FE FE A 217 1555 1555 2.19 LINK NE2 HIS A 187 FE FE A 217 1555 1555 2.24 LINK FE FE A 217 O HOH A 292 1555 1555 2.29 LINK FE FE A 217 O HOH A 294 1555 1555 2.45 LINK FE FE A 217 O HOH A 414 1555 1555 2.52 LINK NE2 HIS B 119 FE FE B 217 1555 1555 2.32 LINK NE2 HIS B 121 FE FE B 217 1555 1555 2.26 LINK NE2 HIS B 187 FE FE B 217 1555 1555 2.22 LINK FE FE B 217 O HOH B 245 1555 1555 2.60 LINK FE FE B 217 O HOH B 367 1555 1555 2.42 CISPEP 1 PRO A 135 GLU A 136 0 14.81 CISPEP 2 GLY A 137 THR A 138 0 18.84 CISPEP 3 ALA B 161 ARG B 162 0 -9.41 SITE 1 AC1 5 HIS B 119 HIS B 121 HIS B 187 HOH B 245 SITE 2 AC1 5 HOH B 367 SITE 1 AC2 6 HIS A 119 HIS A 121 HIS A 187 HOH A 292 SITE 2 AC2 6 HOH A 294 HOH A 414 CRYST1 69.476 69.476 164.660 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014393 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014393 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006073 0.00000