HEADER METAL BINDING PROTEIN 05-OCT-07 2RGT TITLE CRYSTAL STRUCTURE OF LHX3 LIM DOMAINS 1 AND 2 WITH THE BINDING DOMAIN TITLE 2 OF ISL1 CAVEAT 2RGT THERE ARE SEVERAL CHIRALITY ERRORS IN CHAIN A AND B. COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUSION OF LIM/HOMEOBOX PROTEIN LHX3, LINKER, INSULIN GENE COMPND 3 ENHANCER PROTEIN ISL-1; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: LIM HOMEOBOX PROTEIN 3, HOMEOBOX PROTEIN LIM-3, HOMEOBOX COMPND 6 PROTEIN P-LIM, ISLET-1; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: FUSION OF LHX3 RESIDUES 28-153 TO ISL1 RESIDUES 262- COMPND 9 291 VIA A GLYCINE RICH LINKER WITH SEQUENCE GGSGGHMGSGG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090, 32630; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS PROTEIN-PROTEIN COMPLEX, LIM DOMAIN, ZN FINGER, ACTIVATOR, DNA- KEYWDS 2 BINDING, HOMEOBOX, METAL-BINDING, NUCLEUS, TRANSCRIPTION, KEYWDS 3 TRANSCRIPTION REGULATION, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.BHATI,M.LEE,J.M.GUSS,J.M.MATTHEWS REVDAT 6 13-MAR-24 2RGT 1 REMARK SEQADV REVDAT 5 25-OCT-17 2RGT 1 REMARK REVDAT 4 28-JUN-17 2RGT 1 SOURCE REVDAT 3 13-JUL-11 2RGT 1 VERSN REVDAT 2 24-FEB-09 2RGT 1 VERSN REVDAT 1 12-AUG-08 2RGT 0 JRNL AUTH M.BHATI,C.LEE,A.L.NANCARROW,M.LEE,V.J.CRAIG,I.BACH,J.M.GUSS, JRNL AUTH 2 J.P.MACKAY,J.M.MATTHEWS JRNL TITL IMPLEMENTING THE LIM CODE: THE STRUCTURAL BASIS FOR CELL JRNL TITL 2 TYPE-SPECIFIC ASSEMBLY OF LIM-HOMEODOMAIN COMPLEXES. JRNL REF EMBO J. V. 27 2018 2008 JRNL REFN ISSN 0261-4189 JRNL PMID 18583962 JRNL DOI 10.1038/EMBOJ.2008.123 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 23109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1188 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.11 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1275 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2369 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.10000 REMARK 3 B22 (A**2) : 4.26000 REMARK 3 B33 (A**2) : -2.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.34000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.199 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.151 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.983 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2417 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3257 ; 1.919 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 298 ; 7.861 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;33.223 ;23.130 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 406 ;18.923 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;21.198 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 346 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1851 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 954 ; 0.233 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1585 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 87 ; 0.174 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.073 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 106 ; 0.222 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.168 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1544 ; 1.083 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2407 ; 1.729 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 982 ; 2.550 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 850 ; 3.598 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 153 REMARK 3 ORIGIN FOR THE GROUP (A): -7.2213 43.9092 10.2896 REMARK 3 T TENSOR REMARK 3 T11: 0.0212 T22: -0.0450 REMARK 3 T33: -0.0621 T12: -0.0749 REMARK 3 T13: 0.0503 T23: 0.0419 REMARK 3 L TENSOR REMARK 3 L11: 4.3499 L22: 0.7126 REMARK 3 L33: 2.7448 L12: 0.8956 REMARK 3 L13: 1.9614 L23: 0.9350 REMARK 3 S TENSOR REMARK 3 S11: -0.0852 S12: 0.1058 S13: -0.1825 REMARK 3 S21: 0.0907 S22: 0.0915 S23: 0.1028 REMARK 3 S31: 0.3420 S32: -0.0437 S33: -0.0063 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 26 B 152 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2672 72.6887 12.9164 REMARK 3 T TENSOR REMARK 3 T11: -0.0029 T22: 0.0704 REMARK 3 T33: 0.0468 T12: -0.0292 REMARK 3 T13: -0.0499 T23: -0.0386 REMARK 3 L TENSOR REMARK 3 L11: 2.4421 L22: 1.2570 REMARK 3 L33: 2.7317 L12: 1.7520 REMARK 3 L13: 2.5828 L23: 1.8530 REMARK 3 S TENSOR REMARK 3 S11: -0.1974 S12: -0.2649 S13: 0.3081 REMARK 3 S21: -0.2339 S22: -0.1248 S23: 0.1557 REMARK 3 S31: -0.2835 S32: -0.0694 S33: 0.3222 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2RGT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044841. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23120 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 59.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.38800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0M TRI-SODIUM CITRATE, 0.1M TRIS, REMARK 280 HCL PH 7.25, VAPOUR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.74700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.10900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.74700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.10900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 26 REMARK 465 SER A 27 REMARK 465 THR A 28 REMARK 465 PRO A 29 REMARK 465 GLU A 30 REMARK 465 ILE A 31 REMARK 465 GLY A 155 REMARK 465 SER A 156 REMARK 465 GLY A 157 REMARK 465 GLY A 158 REMARK 465 SER A 159 REMARK 465 GLY A 160 REMARK 465 GLY A 161 REMARK 465 SER A 162 REMARK 465 GLY A 163 REMARK 465 GLY A 164 REMARK 465 TYR A 287 REMARK 465 GLN A 288 REMARK 465 PRO A 289 REMARK 465 PRO A 290 REMARK 465 TRP A 291 REMARK 465 GLN B 153 REMARK 465 GLY B 154 REMARK 465 GLY B 155 REMARK 465 SER B 156 REMARK 465 GLY B 157 REMARK 465 GLY B 158 REMARK 465 SER B 159 REMARK 465 GLY B 160 REMARK 465 GLY B 161 REMARK 465 SER B 162 REMARK 465 GLY B 163 REMARK 465 GLY B 164 REMARK 465 PRO B 289 REMARK 465 PRO B 290 REMARK 465 TRP B 291 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -3.76 -50.73 REMARK 500 ASP A 43 150.32 -45.27 REMARK 500 ASP A 51 57.91 38.27 REMARK 500 GLU A 70 -59.62 65.84 REMARK 500 GLN A 110 -120.00 59.87 REMARK 500 SER A 140 -11.78 82.57 REMARK 500 SER B 27 -116.32 64.79 REMARK 500 THR B 28 115.47 -32.37 REMARK 500 PRO B 29 175.26 -59.15 REMARK 500 ASP B 51 29.28 43.65 REMARK 500 ASP B 63 -60.17 -93.89 REMARK 500 GLN B 110 -119.11 60.59 REMARK 500 GLU B 138 -34.28 -38.31 REMARK 500 SER B 140 2.76 85.70 REMARK 500 THR B 150 -76.29 -81.19 REMARK 500 ALA B 151 -39.07 -136.97 REMARK 500 SER B 269 151.88 -46.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 205 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 34 SG REMARK 620 2 CYS A 37 SG 119.8 REMARK 620 3 HIS A 55 ND1 101.2 99.6 REMARK 620 4 CYS A 58 SG 120.2 100.4 114.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 206 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 61 SG REMARK 620 2 CYS A 64 SG 115.4 REMARK 620 3 CYS A 81 SG 115.9 117.1 REMARK 620 4 ASP A 84 OD1 104.7 94.8 105.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 207 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 93 SG REMARK 620 2 CYS A 96 SG 107.9 REMARK 620 3 HIS A 115 ND1 100.3 94.6 REMARK 620 4 CYS A 118 SG 114.7 116.7 119.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 208 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 121 SG REMARK 620 2 CYS A 124 SG 113.7 REMARK 620 3 CYS A 144 SG 108.1 123.3 REMARK 620 4 ASP A 147 OD2 103.1 105.7 100.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 34 SG REMARK 620 2 CYS B 37 SG 112.4 REMARK 620 3 HIS B 55 ND1 109.7 99.8 REMARK 620 4 CYS B 58 SG 113.0 118.0 102.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 61 SG REMARK 620 2 CYS B 64 SG 104.8 REMARK 620 3 CYS B 81 SG 120.3 120.5 REMARK 620 4 ASP B 84 OD2 99.6 101.7 106.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 93 SG REMARK 620 2 CYS B 96 SG 113.2 REMARK 620 3 HIS B 115 ND1 100.6 98.0 REMARK 620 4 CYS B 118 SG 112.0 115.5 116.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 121 SG REMARK 620 2 CYS B 124 SG 116.8 REMARK 620 3 CYS B 144 SG 110.6 120.0 REMARK 620 4 ASP B 147 OD2 115.6 91.4 99.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 204 REMARK 999 REMARK 999 SEQUENCE REMARK 999 FUSION OF LHX3 RESIDUES 28-153 TO ISL1 RESIDUES 262-291 VIA A REMARK 999 GLYCINE RICH LINKER WITH SEQUENCE GGSGGSGGSGG. RESIDUE NUMBERS 165- REMARK 999 261 ARE SIMPLY SKIPPED. DBREF 2RGT A 28 153 UNP P50481 LHX3_MOUSE 28 153 DBREF 2RGT A 262 291 UNP P61372 ISL1_MOUSE 262 291 DBREF 2RGT A 154 164 PDB 2RGT 2RGT 154 164 DBREF 2RGT B 28 153 UNP P50481 LHX3_MOUSE 28 153 DBREF 2RGT B 262 291 UNP P61372 ISL1_MOUSE 262 291 DBREF 2RGT B 154 164 PDB 2RGT 2RGT 154 164 SEQADV 2RGT GLY A 26 UNP P50481 EXPRESSION TAG SEQADV 2RGT SER A 27 UNP P50481 EXPRESSION TAG SEQADV 2RGT GLY B 26 UNP P50481 EXPRESSION TAG SEQADV 2RGT SER B 27 UNP P50481 EXPRESSION TAG SEQRES 1 A 169 GLY SER THR PRO GLU ILE PRO MET CYS ALA GLY CYS ASP SEQRES 2 A 169 GLN HIS ILE LEU ASP ARG PHE ILE LEU LYS ALA LEU ASP SEQRES 3 A 169 ARG HIS TRP HIS SER LYS CYS LEU LYS CYS SER ASP CYS SEQRES 4 A 169 HIS VAL PRO LEU ALA GLU ARG CYS PHE SER ARG GLY GLU SEQRES 5 A 169 SER VAL TYR CYS LYS ASP ASP PHE PHE LYS ARG PHE GLY SEQRES 6 A 169 THR LYS CYS ALA ALA CYS GLN LEU GLY ILE PRO PRO THR SEQRES 7 A 169 GLN VAL VAL ARG ARG ALA GLN ASP PHE VAL TYR HIS LEU SEQRES 8 A 169 HIS CYS PHE ALA CYS VAL VAL CYS LYS ARG GLN LEU ALA SEQRES 9 A 169 THR GLY ASP GLU PHE TYR LEU MET GLU ASP SER ARG LEU SEQRES 10 A 169 VAL CYS LYS ALA ASP TYR GLU THR ALA LYS GLN GLY GLY SEQRES 11 A 169 SER GLY GLY SER GLY GLY SER GLY GLY GLY THR PRO MET SEQRES 12 A 169 VAL ALA ALA SER PRO GLU ARG HIS ASP GLY GLY LEU GLN SEQRES 13 A 169 ALA ASN PRO VAL GLU VAL GLN SER TYR GLN PRO PRO TRP SEQRES 1 B 169 GLY SER THR PRO GLU ILE PRO MET CYS ALA GLY CYS ASP SEQRES 2 B 169 GLN HIS ILE LEU ASP ARG PHE ILE LEU LYS ALA LEU ASP SEQRES 3 B 169 ARG HIS TRP HIS SER LYS CYS LEU LYS CYS SER ASP CYS SEQRES 4 B 169 HIS VAL PRO LEU ALA GLU ARG CYS PHE SER ARG GLY GLU SEQRES 5 B 169 SER VAL TYR CYS LYS ASP ASP PHE PHE LYS ARG PHE GLY SEQRES 6 B 169 THR LYS CYS ALA ALA CYS GLN LEU GLY ILE PRO PRO THR SEQRES 7 B 169 GLN VAL VAL ARG ARG ALA GLN ASP PHE VAL TYR HIS LEU SEQRES 8 B 169 HIS CYS PHE ALA CYS VAL VAL CYS LYS ARG GLN LEU ALA SEQRES 9 B 169 THR GLY ASP GLU PHE TYR LEU MET GLU ASP SER ARG LEU SEQRES 10 B 169 VAL CYS LYS ALA ASP TYR GLU THR ALA LYS GLN GLY GLY SEQRES 11 B 169 SER GLY GLY SER GLY GLY SER GLY GLY GLY THR PRO MET SEQRES 12 B 169 VAL ALA ALA SER PRO GLU ARG HIS ASP GLY GLY LEU GLN SEQRES 13 B 169 ALA ASN PRO VAL GLU VAL GLN SER TYR GLN PRO PRO TRP HET ZN A 205 1 HET ZN A 206 1 HET ZN A 207 1 HET ZN A 208 1 HET ZN B 200 1 HET ZN B 201 1 HET ZN B 203 1 HET ZN B 204 1 HETNAM ZN ZINC ION FORMUL 3 ZN 8(ZN 2+) FORMUL 11 HOH *48(H2 O) HELIX 1 1 CYS A 81 GLY A 90 1 10 HELIX 2 2 HIS A 117 PHE A 119 5 3 HELIX 3 3 ASP A 147 GLY A 154 1 8 HELIX 4 4 HIS B 55 LEU B 59 5 5 HELIX 5 5 CYS B 81 GLY B 90 1 10 HELIX 6 6 HIS B 115 PHE B 119 5 5 HELIX 7 7 LYS B 145 GLU B 149 1 5 SHEET 1 A 2 LEU A 47 LYS A 48 0 SHEET 2 A 2 HIS A 53 TRP A 54 -1 O TRP A 54 N LEU A 47 SHEET 1 B 2 PHE A 73 SER A 74 0 SHEET 2 B 2 VAL A 79 TYR A 80 -1 O TYR A 80 N PHE A 73 SHEET 1 C 3 PHE A 112 HIS A 115 0 SHEET 2 C 3 VAL A 105 ALA A 109 -1 N ARG A 107 O TYR A 114 SHEET 3 C 3 GLU A 271 ARG A 272 -1 O GLU A 271 N VAL A 106 SHEET 1 D 3 LEU A 142 CYS A 144 0 SHEET 2 D 3 GLU A 133 LEU A 136 -1 N TYR A 135 O VAL A 143 SHEET 3 D 3 THR A 263 VAL A 266 -1 O THR A 263 N LEU A 136 SHEET 1 E 5 ARG B 52 TRP B 54 0 SHEET 2 E 5 PHE B 45 ALA B 49 -1 N LEU B 47 O TRP B 54 SHEET 3 E 5 ASN B 280 SER B 286 -1 O GLU B 283 N LYS B 48 SHEET 4 E 5 ARG B 71 ARG B 75 -1 N CYS B 72 O ASN B 280 SHEET 5 E 5 SER B 78 TYR B 80 -1 O TYR B 80 N PHE B 73 SHEET 1 F 2 ARG B 107 ALA B 109 0 SHEET 2 F 2 PHE B 112 TYR B 114 -1 O TYR B 114 N ARG B 107 SHEET 1 G 3 LEU B 142 CYS B 144 0 SHEET 2 G 3 GLU B 133 LEU B 136 -1 N TYR B 135 O VAL B 143 SHEET 3 G 3 THR B 263 VAL B 266 -1 O MET B 265 N PHE B 134 LINK SG CYS A 34 ZN ZN A 205 1555 1555 2.12 LINK SG CYS A 37 ZN ZN A 205 1555 1555 2.63 LINK ND1 HIS A 55 ZN ZN A 205 1555 1555 1.99 LINK SG CYS A 58 ZN ZN A 205 1555 1555 2.34 LINK SG CYS A 61 ZN ZN A 206 1555 1555 2.20 LINK SG CYS A 64 ZN ZN A 206 1555 1555 2.25 LINK SG CYS A 81 ZN ZN A 206 1555 1555 2.35 LINK OD1 ASP A 84 ZN ZN A 206 1555 1555 2.12 LINK SG CYS A 93 ZN ZN A 207 1555 1555 2.29 LINK SG CYS A 96 ZN ZN A 207 1555 1555 2.38 LINK ND1 HIS A 115 ZN ZN A 207 1555 1555 2.21 LINK SG CYS A 118 ZN ZN A 207 1555 1555 2.24 LINK SG CYS A 121 ZN ZN A 208 1555 1555 2.30 LINK SG CYS A 124 ZN ZN A 208 1555 1555 2.27 LINK SG CYS A 144 ZN ZN A 208 1555 1555 2.38 LINK OD2 ASP A 147 ZN ZN A 208 1555 1555 2.23 LINK SG CYS B 34 ZN ZN B 200 1555 1555 2.40 LINK SG CYS B 37 ZN ZN B 200 1555 1555 2.07 LINK ND1 HIS B 55 ZN ZN B 200 1555 1555 2.25 LINK SG CYS B 58 ZN ZN B 200 1555 1555 2.64 LINK SG CYS B 61 ZN ZN B 201 1555 1555 2.43 LINK SG CYS B 64 ZN ZN B 201 1555 1555 2.34 LINK SG CYS B 81 ZN ZN B 201 1555 1555 2.32 LINK OD2 ASP B 84 ZN ZN B 201 1555 1555 2.28 LINK SG CYS B 93 ZN ZN B 203 1555 1555 2.32 LINK SG CYS B 96 ZN ZN B 203 1555 1555 2.30 LINK ND1 HIS B 115 ZN ZN B 203 1555 1555 2.23 LINK SG CYS B 118 ZN ZN B 203 1555 1555 2.39 LINK SG CYS B 121 ZN ZN B 204 1555 1555 2.37 LINK SG CYS B 124 ZN ZN B 204 1555 1555 2.43 LINK SG CYS B 144 ZN ZN B 204 1555 1555 2.27 LINK OD2 ASP B 147 ZN ZN B 204 1555 1555 2.08 CISPEP 1 GLY B 26 SER B 27 0 -10.94 SITE 1 AC1 4 CYS A 34 CYS A 37 HIS A 55 CYS A 58 SITE 1 AC2 4 CYS A 61 CYS A 64 CYS A 81 ASP A 84 SITE 1 AC3 4 CYS A 93 CYS A 96 HIS A 115 CYS A 118 SITE 1 AC4 4 CYS A 121 CYS A 124 CYS A 144 ASP A 147 SITE 1 AC5 4 CYS B 34 CYS B 37 HIS B 55 CYS B 58 SITE 1 AC6 4 CYS B 61 CYS B 64 CYS B 81 ASP B 84 SITE 1 AC7 4 CYS B 93 CYS B 96 HIS B 115 CYS B 118 SITE 1 AC8 4 CYS B 121 CYS B 124 CYS B 144 ASP B 147 CRYST1 119.494 62.218 51.885 90.00 91.61 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008369 0.000000 0.000236 0.00000 SCALE2 0.000000 0.016073 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019281 0.00000