HEADER HYDROLASE 06-OCT-07 2RH6 TITLE STRUCTURE OF XAC NPP FOR EVALUATION OF REFINEMENT METHODOLOGY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHODIESTERASE-NUCLEOTIDE PYROPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 40-432; COMPND 5 EC: 3.6.1.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS AXONOPODIS PV. CITRI; SOURCE 3 ORGANISM_TAXID: 190486; SOURCE 4 STRAIN: 306; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.G.ZALATAN,T.D.FENN,A.T.BRUNGER,D.HERSHLAG REVDAT 5 30-AUG-23 2RH6 1 REMARK LINK REVDAT 4 13-JUL-11 2RH6 1 VERSN REVDAT 3 24-FEB-09 2RH6 1 VERSN REVDAT 2 06-NOV-07 2RH6 1 JRNL REVDAT 1 30-OCT-07 2RH6 0 JRNL AUTH T.D.FENN,E.POZHARSKI,M.A.WILSON JRNL TITL CRYSTALLOGRAPHIC GOODNESS OF FIT: A NEW TREATMENT OF MODEL JRNL TITL 2 COMPLEXITY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.G.ZALATAN,T.D.FENN,A.T.BRUNGER,D.HERSCHLAG REMARK 1 TITL STRUCTURAL AND FUNCTIONAL COMPARISONS OF NUCLEOTIDE REMARK 1 TITL 2 PYROPHOSPHATASE/PHOSPHODIESTERASE AND ALKALINE PHOSPHATASE: REMARK 1 TITL 3 IMPLICATIONS FOR MECHANISM AND EVOLUTION. REMARK 1 REF BIOCHEMISTRY V. 45 9788 2006 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 16893180 REMARK 1 DOI 10.1021/BI060847T REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 82.2 REMARK 3 NUMBER OF REFLECTIONS : 93861 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4886 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2514 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 30.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.3740 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.4620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5882 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 669 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.477 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6343 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 5620 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8713 ; 1.294 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13020 ; 0.820 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 816 ; 5.881 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 286 ;34.207 ;22.517 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 922 ;12.659 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 61 ;11.314 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 918 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7350 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1356 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1347 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5935 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3090 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3734 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 513 ; 0.135 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.060 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.197 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 118 ; 0.278 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 48 ; 0.116 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5070 ; 0.870 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1606 ; 0.184 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6376 ; 0.999 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2784 ; 1.583 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2337 ; 2.334 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 44 A 425 4 REMARK 3 1 B 44 B 425 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 5747 ; 0.25 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 5747 ; 0.64 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2RH6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044854. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110794 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2GSN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS HCL, 19% PEG 3350, PH REMARK 280 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.02450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.97650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.31000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.97650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.02450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.31000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 40 REMARK 465 SER A 41 REMARK 465 ALA A 42 REMARK 465 SER A 43 REMARK 465 PRO A 426 REMARK 465 PRO A 427 REMARK 465 ALA A 428 REMARK 465 PRO A 429 REMARK 465 ASP A 430 REMARK 465 ALA A 431 REMARK 465 ARG A 432 REMARK 465 ALA B 40 REMARK 465 SER B 41 REMARK 465 ALA B 42 REMARK 465 SER B 43 REMARK 465 PRO B 426 REMARK 465 PRO B 427 REMARK 465 ALA B 428 REMARK 465 PRO B 429 REMARK 465 ASP B 430 REMARK 465 ALA B 431 REMARK 465 ARG B 432 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 90 O1P AMP A 433 1.94 REMARK 500 OG1 THR B 90 O1P AMP B 433 2.04 REMARK 500 O HOH A 482 O HOH A 733 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 155 39.06 70.01 REMARK 500 ALA A 162 76.83 -100.59 REMARK 500 ASP A 194 -164.19 -126.29 REMARK 500 ASP A 194 -164.19 -125.10 REMARK 500 GLN A 197 32.98 -88.22 REMARK 500 HIS A 216 -8.76 -140.17 REMARK 500 ARG A 354 93.76 -67.22 REMARK 500 ALA A 355 99.58 -52.78 REMARK 500 ARG A 357 -79.40 -136.60 REMARK 500 HIS A 363 -151.49 -125.15 REMARK 500 ASP B 194 -168.89 -127.06 REMARK 500 ASP B 194 -168.89 -125.91 REMARK 500 HIS B 267 32.08 -98.20 REMARK 500 ARG B 357 -75.42 -164.11 REMARK 500 HIS B 363 -152.46 -126.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 54 OD1 REMARK 620 2 THR A 90 OG1 125.1 REMARK 620 3 ASP A 257 OD2 108.8 103.5 REMARK 620 4 HIS A 258 NE2 108.6 111.0 95.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 210 OD1 REMARK 620 2 ASP A 210 OD2 56.4 REMARK 620 3 HIS A 214 NE2 99.6 92.5 REMARK 620 4 HIS A 363 NE2 93.9 147.1 107.7 REMARK 620 5 AMP A 433 O1P 87.8 79.4 163.8 86.1 REMARK 620 6 AMP A 433 O3P 155.1 103.5 95.7 100.1 72.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 54 OD1 REMARK 620 2 THR B 90 OG1 122.9 REMARK 620 3 ASP B 257 OD2 107.2 101.1 REMARK 620 4 HIS B 258 NE2 111.9 113.8 95.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 210 OD1 REMARK 620 2 HIS B 214 NE2 105.4 REMARK 620 3 HIS B 363 NE2 95.6 106.4 REMARK 620 4 AMP B 433 O3P 147.2 98.0 99.5 REMARK 620 5 AMP B 433 O1P 83.8 162.3 87.4 68.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 433 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 433 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 434 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GSU RELATED DB: PDB REMARK 900 SIMILAR DATASET AS 2GSU USED FOR ERROR ANALYSIS DBREF 2RH6 A 40 432 UNP Q8PIS1 Q8PIS1_XANAC 40 432 DBREF 2RH6 B 40 432 UNP Q8PIS1 Q8PIS1_XANAC 40 432 SEQRES 1 A 393 ALA SER ALA SER THR PRO HIS ALA LEU LEU LEU ILE SER SEQRES 2 A 393 ILE ASP GLY LEU ARG ALA ASP MET LEU ASP ARG GLY ILE SEQRES 3 A 393 THR PRO ASN LEU SER HIS LEU ALA ARG GLU GLY VAL ARG SEQRES 4 A 393 ALA ARG TRP MET ALA PRO SER TYR PRO SER LEU THR PHE SEQRES 5 A 393 PRO ASN HIS TYR THR LEU VAL THR GLY LEU ARG PRO ASP SEQRES 6 A 393 HIS HIS GLY ILE VAL HIS ASN SER MET ARG ASP PRO THR SEQRES 7 A 393 LEU GLY GLY PHE TRP LEU SER LYS SER GLU ALA VAL GLY SEQRES 8 A 393 ASP ALA ARG TRP TRP GLY GLY GLU PRO VAL TRP VAL GLY SEQRES 9 A 393 VAL GLU ASN THR GLY GLN HIS ALA ALA THR TRP SER TRP SEQRES 10 A 393 PRO GLY SER GLU ALA ALA ILE LYS GLY VAL ARG PRO SER SEQRES 11 A 393 GLN TRP ARG HIS TYR GLN LYS GLY VAL ARG LEU ASP THR SEQRES 12 A 393 ARG VAL ASP ALA VAL ARG GLY TRP LEU ALA THR ASP GLY SEQRES 13 A 393 ALA GLN ARG ASN ARG LEU VAL THR LEU TYR PHE GLU HIS SEQRES 14 A 393 VAL ASP GLU ALA GLY HIS ASP HIS GLY PRO GLU SER ARG SEQRES 15 A 393 GLN TYR ALA ASP ALA VAL ARG ALA VAL ASP ALA ALA ILE SEQRES 16 A 393 GLY ARG LEU LEU ALA GLY MET GLN ARG ASP GLY THR ARG SEQRES 17 A 393 ALA ARG THR ASN ILE ILE VAL VAL SER ASP HIS GLY MET SEQRES 18 A 393 ALA GLU VAL ALA PRO GLY HIS ALA ILE SER VAL GLU ASP SEQRES 19 A 393 ILE ALA PRO PRO GLN ILE ALA THR ALA ILE THR ASP GLY SEQRES 20 A 393 GLN VAL ILE GLY PHE GLU PRO LEU PRO GLY GLN GLN ALA SEQRES 21 A 393 ALA ALA GLU ALA SER VAL LEU GLY ALA HIS ASP HIS TYR SEQRES 22 A 393 ASP CYS TRP ARG LYS ALA GLU LEU PRO ALA ARG TRP GLN SEQRES 23 A 393 TYR GLY SER HIS PRO ARG ILE PRO SER LEU VAL CYS GLN SEQRES 24 A 393 MET HIS GLU GLY TRP ASP ALA LEU PHE PRO ASP LYS LEU SEQRES 25 A 393 ALA LYS ARG ALA GLN ARG GLY THR ARG GLY SER HIS GLY SEQRES 26 A 393 TYR ASP PRO ALA LEU PRO SER MET ARG ALA VAL PHE LEU SEQRES 27 A 393 ALA GLN GLY PRO ASP LEU ALA GLN GLY LYS THR LEU PRO SEQRES 28 A 393 GLY PHE ASP ASN VAL ASP VAL TYR ALA LEU MET SER ARG SEQRES 29 A 393 LEU LEU GLY ILE PRO ALA ALA PRO ASN ASP GLY ASN PRO SEQRES 30 A 393 ALA THR LEU LEU PRO ALA LEU ARG MET PRO PRO ALA PRO SEQRES 31 A 393 ASP ALA ARG SEQRES 1 B 393 ALA SER ALA SER THR PRO HIS ALA LEU LEU LEU ILE SER SEQRES 2 B 393 ILE ASP GLY LEU ARG ALA ASP MET LEU ASP ARG GLY ILE SEQRES 3 B 393 THR PRO ASN LEU SER HIS LEU ALA ARG GLU GLY VAL ARG SEQRES 4 B 393 ALA ARG TRP MET ALA PRO SER TYR PRO SER LEU THR PHE SEQRES 5 B 393 PRO ASN HIS TYR THR LEU VAL THR GLY LEU ARG PRO ASP SEQRES 6 B 393 HIS HIS GLY ILE VAL HIS ASN SER MET ARG ASP PRO THR SEQRES 7 B 393 LEU GLY GLY PHE TRP LEU SER LYS SER GLU ALA VAL GLY SEQRES 8 B 393 ASP ALA ARG TRP TRP GLY GLY GLU PRO VAL TRP VAL GLY SEQRES 9 B 393 VAL GLU ASN THR GLY GLN HIS ALA ALA THR TRP SER TRP SEQRES 10 B 393 PRO GLY SER GLU ALA ALA ILE LYS GLY VAL ARG PRO SER SEQRES 11 B 393 GLN TRP ARG HIS TYR GLN LYS GLY VAL ARG LEU ASP THR SEQRES 12 B 393 ARG VAL ASP ALA VAL ARG GLY TRP LEU ALA THR ASP GLY SEQRES 13 B 393 ALA GLN ARG ASN ARG LEU VAL THR LEU TYR PHE GLU HIS SEQRES 14 B 393 VAL ASP GLU ALA GLY HIS ASP HIS GLY PRO GLU SER ARG SEQRES 15 B 393 GLN TYR ALA ASP ALA VAL ARG ALA VAL ASP ALA ALA ILE SEQRES 16 B 393 GLY ARG LEU LEU ALA GLY MET GLN ARG ASP GLY THR ARG SEQRES 17 B 393 ALA ARG THR ASN ILE ILE VAL VAL SER ASP HIS GLY MET SEQRES 18 B 393 ALA GLU VAL ALA PRO GLY HIS ALA ILE SER VAL GLU ASP SEQRES 19 B 393 ILE ALA PRO PRO GLN ILE ALA THR ALA ILE THR ASP GLY SEQRES 20 B 393 GLN VAL ILE GLY PHE GLU PRO LEU PRO GLY GLN GLN ALA SEQRES 21 B 393 ALA ALA GLU ALA SER VAL LEU GLY ALA HIS ASP HIS TYR SEQRES 22 B 393 ASP CYS TRP ARG LYS ALA GLU LEU PRO ALA ARG TRP GLN SEQRES 23 B 393 TYR GLY SER HIS PRO ARG ILE PRO SER LEU VAL CYS GLN SEQRES 24 B 393 MET HIS GLU GLY TRP ASP ALA LEU PHE PRO ASP LYS LEU SEQRES 25 B 393 ALA LYS ARG ALA GLN ARG GLY THR ARG GLY SER HIS GLY SEQRES 26 B 393 TYR ASP PRO ALA LEU PRO SER MET ARG ALA VAL PHE LEU SEQRES 27 B 393 ALA GLN GLY PRO ASP LEU ALA GLN GLY LYS THR LEU PRO SEQRES 28 B 393 GLY PHE ASP ASN VAL ASP VAL TYR ALA LEU MET SER ARG SEQRES 29 B 393 LEU LEU GLY ILE PRO ALA ALA PRO ASN ASP GLY ASN PRO SEQRES 30 B 393 ALA THR LEU LEU PRO ALA LEU ARG MET PRO PRO ALA PRO SEQRES 31 B 393 ASP ALA ARG HET ZN A 1 1 HET ZN A 2 1 HET AMP A 433 23 HET ZN B 1 1 HET ZN B 2 1 HET AMP B 433 23 HET AMP B 434 23 HETNAM ZN ZINC ION HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 3 ZN 4(ZN 2+) FORMUL 5 AMP 3(C10 H14 N5 O7 P) FORMUL 10 HOH *669(H2 O) HELIX 1 1 ARG A 57 ARG A 63 5 7 HELIX 2 2 THR A 66 GLY A 76 1 11 HELIX 3 3 LEU A 89 GLY A 100 1 12 HELIX 4 4 ARG A 102 GLY A 107 1 6 HELIX 5 5 LYS A 125 GLY A 130 1 6 HELIX 6 6 ASP A 131 TRP A 135 5 5 HELIX 7 7 PRO A 139 ASN A 146 1 8 HELIX 8 8 ALA A 162 VAL A 166 5 5 HELIX 9 9 ARG A 179 THR A 193 1 15 HELIX 10 10 ASP A 194 GLN A 197 5 4 HELIX 11 11 GLU A 207 GLY A 217 1 11 HELIX 12 12 SER A 220 ASP A 244 1 25 HELIX 13 13 THR A 246 ALA A 248 5 3 HELIX 14 14 GLU A 272 ILE A 274 5 3 HELIX 15 15 GLN A 297 LEU A 306 1 10 HELIX 16 16 ALA A 318 LEU A 320 5 3 HELIX 17 17 PRO A 321 GLN A 325 5 5 HELIX 18 18 PHE A 347 ARG A 354 1 8 HELIX 19 19 LEU A 369 ARG A 373 5 5 HELIX 20 20 ASP A 396 GLY A 406 1 11 HELIX 21 21 LEU A 419 LEU A 423 5 5 HELIX 22 22 ARG B 57 ASP B 62 5 6 HELIX 23 23 THR B 66 GLY B 76 1 11 HELIX 24 24 LEU B 89 GLY B 100 1 12 HELIX 25 25 ARG B 102 GLY B 107 1 6 HELIX 26 26 LYS B 125 GLY B 130 1 6 HELIX 27 27 ASP B 131 TRP B 135 5 5 HELIX 28 28 PRO B 139 THR B 147 1 9 HELIX 29 29 ALA B 162 VAL B 166 5 5 HELIX 30 30 ARG B 179 THR B 193 1 15 HELIX 31 31 ASP B 194 GLN B 197 5 4 HELIX 32 32 GLU B 207 GLY B 217 1 11 HELIX 33 33 SER B 220 ASP B 244 1 25 HELIX 34 34 THR B 246 ALA B 248 5 3 HELIX 35 35 VAL B 271 ALA B 275 1 5 HELIX 36 36 GLN B 297 LEU B 306 1 10 HELIX 37 37 ALA B 318 LEU B 320 5 3 HELIX 38 38 PRO B 321 GLN B 325 5 5 HELIX 39 39 PHE B 347 ARG B 354 1 8 HELIX 40 40 LEU B 369 ARG B 373 5 5 HELIX 41 41 ASP B 396 GLY B 406 1 11 HELIX 42 42 LEU B 419 LEU B 423 5 5 SHEET 1 A 7 HIS A 150 THR A 153 0 SHEET 2 A 7 ASN A 199 PHE A 206 1 O LEU A 201 N ALA A 152 SHEET 3 A 7 ALA A 47 ILE A 53 1 N LEU A 48 O ARG A 200 SHEET 4 A 7 THR A 250 VAL A 255 1 O ASN A 251 N ALA A 47 SHEET 5 A 7 PHE A 376 GLN A 379 -1 O LEU A 377 N VAL A 254 SHEET 6 A 7 VAL A 77 ALA A 79 -1 N VAL A 77 O ALA A 378 SHEET 7 A 7 LYS A 387 LEU A 389 1 O LEU A 389 N ARG A 78 SHEET 1 B 2 MET A 82 ALA A 83 0 SHEET 2 B 2 PHE A 392 ASP A 393 1 O PHE A 392 N ALA A 83 SHEET 1 C 2 MET A 113 ASP A 115 0 SHEET 2 C 2 GLY A 119 PHE A 121 -1 O PHE A 121 N MET A 113 SHEET 1 D 2 ALA A 261 VAL A 263 0 SHEET 2 D 2 ARG A 360 SER A 362 -1 O SER A 362 N ALA A 261 SHEET 1 E 2 ALA A 268 SER A 270 0 SHEET 2 E 2 ASP A 344 LEU A 346 1 O LEU A 346 N ILE A 269 SHEET 1 F 5 ALA A 280 ALA A 282 0 SHEET 2 F 5 VAL A 288 PRO A 293 -1 O GLU A 292 N THR A 281 SHEET 3 F 5 LEU A 335 MET A 339 -1 O CYS A 337 N ILE A 289 SHEET 4 F 5 TYR A 312 ARG A 316 -1 N TRP A 315 O VAL A 336 SHEET 5 F 5 GLY A 307 ALA A 308 -1 N GLY A 307 O CYS A 314 SHEET 1 G 7 HIS B 150 THR B 153 0 SHEET 2 G 7 ASN B 199 PHE B 206 1 O LEU B 201 N ALA B 152 SHEET 3 G 7 ALA B 47 ILE B 53 1 N LEU B 48 O ARG B 200 SHEET 4 G 7 THR B 250 VAL B 255 1 O ILE B 253 N ILE B 51 SHEET 5 G 7 PHE B 376 GLN B 379 -1 O LEU B 377 N VAL B 254 SHEET 6 G 7 VAL B 77 ALA B 79 -1 N VAL B 77 O ALA B 378 SHEET 7 G 7 LYS B 387 LEU B 389 1 O LEU B 389 N ARG B 78 SHEET 1 H 2 MET B 82 ALA B 83 0 SHEET 2 H 2 PHE B 392 ASP B 393 1 O PHE B 392 N ALA B 83 SHEET 1 I 2 MET B 113 ASP B 115 0 SHEET 2 I 2 GLY B 119 PHE B 121 -1 O PHE B 121 N MET B 113 SHEET 1 J 2 ALA B 261 VAL B 263 0 SHEET 2 J 2 ARG B 360 SER B 362 -1 O SER B 362 N ALA B 261 SHEET 1 K 2 ALA B 268 SER B 270 0 SHEET 2 K 2 ASP B 344 LEU B 346 1 O LEU B 346 N ILE B 269 SHEET 1 L 5 ALA B 280 ALA B 282 0 SHEET 2 L 5 VAL B 288 PRO B 293 -1 O GLU B 292 N THR B 281 SHEET 3 L 5 LEU B 335 MET B 339 -1 O CYS B 337 N ILE B 289 SHEET 4 L 5 TYR B 312 ARG B 316 -1 N TRP B 315 O VAL B 336 SHEET 5 L 5 GLY B 307 ALA B 308 -1 N GLY B 307 O CYS B 314 SSBOND 1 CYS A 314 CYS A 337 1555 1555 2.07 SSBOND 2 CYS B 314 CYS B 337 1555 1555 2.08 LINK ZN ZN A 1 OD1 ASP A 54 1555 1555 2.03 LINK ZN ZN A 1 OG1 THR A 90 1555 1555 2.15 LINK ZN ZN A 1 OD2 ASP A 257 1555 1555 1.99 LINK ZN ZN A 1 NE2 HIS A 258 1555 1555 2.18 LINK ZN ZN A 2 OD1 ASP A 210 1555 1555 2.39 LINK ZN ZN A 2 OD2 ASP A 210 1555 1555 2.21 LINK ZN ZN A 2 NE2 HIS A 214 1555 1555 2.02 LINK ZN ZN A 2 NE2 HIS A 363 1555 1555 2.09 LINK ZN ZN A 2 O1P AMP A 433 1555 1555 2.31 LINK ZN ZN A 2 O3P AMP A 433 1555 1555 1.90 LINK ZN ZN B 1 OD1 ASP B 54 1555 1555 2.06 LINK ZN ZN B 1 OG1 THR B 90 1555 1555 2.09 LINK ZN ZN B 1 OD2 ASP B 257 1555 1555 2.01 LINK ZN ZN B 1 NE2 HIS B 258 1555 1555 2.07 LINK ZN ZN B 2 OD1 ASP B 210 1555 1555 2.29 LINK ZN ZN B 2 NE2 HIS B 214 1555 1555 2.01 LINK ZN ZN B 2 NE2 HIS B 363 1555 1555 2.10 LINK ZN ZN B 2 O3P AMP B 433 1555 1555 2.11 LINK ZN ZN B 2 O1P AMP B 433 1555 1555 2.34 CISPEP 1 TYR A 86 PRO A 87 0 -3.80 CISPEP 2 TYR B 86 PRO B 87 0 -4.49 SITE 1 AC1 5 ASP A 54 THR A 90 ASP A 257 HIS A 258 SITE 2 AC1 5 AMP A 433 SITE 1 AC2 4 ASP A 210 HIS A 214 HIS A 363 AMP A 433 SITE 1 AC3 5 ASP B 54 THR B 90 ASP B 257 HIS B 258 SITE 2 AC3 5 AMP B 433 SITE 1 AC4 4 ASP B 210 HIS B 214 HIS B 363 AMP B 433 SITE 1 AC5 18 ZN A 1 ZN A 2 ASP A 54 THR A 90 SITE 2 AC5 18 PHE A 91 ASN A 111 LEU A 123 SER A 155 SITE 3 AC5 18 TYR A 174 LYS A 176 TYR A 205 ASP A 210 SITE 4 AC5 18 GLU A 211 HIS A 214 HIS A 258 HIS A 363 SITE 5 AC5 18 HOH A 534 HOH A 736 SITE 1 AC6 18 ZN B 1 ZN B 2 ASP B 54 THR B 90 SITE 2 AC6 18 PHE B 91 ASN B 111 LEU B 123 SER B 155 SITE 3 AC6 18 TYR B 174 LYS B 176 TYR B 205 ASP B 210 SITE 4 AC6 18 GLU B 211 HIS B 214 HIS B 258 HIS B 363 SITE 5 AC6 18 HOH B 588 HOH B 637 SITE 1 AC7 12 GLN A 170 TRP A 171 ARG A 172 HOH A 538 SITE 2 AC7 12 HOH A 683 SER B 112 TRP B 122 PHE B 347 SITE 3 AC7 12 ASP B 349 HOH B 487 HOH B 590 HOH B 679 CRYST1 66.049 78.620 129.953 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015140 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012719 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007695 0.00000