HEADER TRANSCRIPTION 08-OCT-07 2RHA TITLE CRYSTAL STRUCTURE OF A PREDICTED DNA-BINDING TRANSCRIPTIONAL REGULATOR TITLE 2 (SARO_1072) FROM NOVOSPHINGOBIUM AROMATICIVORANS DSM AT 2.10 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, TETR FAMILY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOVOSPHINGOBIUM AROMATICIVORANS; SOURCE 3 ORGANISM_TAXID: 279238; SOURCE 4 STRAIN: DSM 12444; SOURCE 5 GENE: YP_496351.1, SARO_1072; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS TRANSCRIPTION REGULATOR, DNA/RNA-BINDING 3-HELICAL BUNDLE FOLD, HELIX KEYWDS 2 TURN HELIX MOTIF, HTH MOTIF, TRANSCRIPTION REGULATION, STRUCTURAL KEYWDS 3 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 4 STRUCTURE INITIATIVE, PSI-2, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 9 15-NOV-23 2RHA 1 REMARK REVDAT 8 20-SEP-23 2RHA 1 REMARK REVDAT 7 25-JAN-23 2RHA 1 REMARK SEQADV REVDAT 6 24-JUL-19 2RHA 1 REMARK LINK REVDAT 5 25-OCT-17 2RHA 1 REMARK REVDAT 4 13-JUL-11 2RHA 1 VERSN REVDAT 3 23-MAR-11 2RHA 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2RHA 1 VERSN REVDAT 1 30-OCT-07 2RHA 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PREDICTED DNA-BINDING TRANSCRIPTIONAL JRNL TITL 2 REGULATOR (YP_496351.1) FROM NOVOSPHINGOBIUM AROMATICIVORANS JRNL TITL 3 DSM 12444 AT 2.10 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 35315 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1772 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2434 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1612 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 202 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 39.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.16000 REMARK 3 B22 (A**2) : -1.16000 REMARK 3 B33 (A**2) : 2.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.432 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1795 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1263 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2417 ; 1.649 ; 2.010 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3052 ; 1.061 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 218 ; 5.285 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;28.005 ;22.771 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 310 ;14.614 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;22.999 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 259 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1963 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 379 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 413 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1286 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 891 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 918 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 143 ; 0.191 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.143 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 41 ; 0.315 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.243 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1183 ; 2.438 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 425 ; 0.481 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1708 ; 3.212 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 788 ; 6.549 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 709 ; 8.367 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): 27.2560 11.8262 51.5333 REMARK 3 T TENSOR REMARK 3 T11: -0.1193 T22: -0.1028 REMARK 3 T33: -0.1062 T12: 0.0280 REMARK 3 T13: 0.0190 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 0.8988 L22: 1.7411 REMARK 3 L33: 1.3633 L12: 0.0022 REMARK 3 L13: 0.0219 L23: 0.6009 REMARK 3 S TENSOR REMARK 3 S11: -0.0463 S12: 0.0875 S13: -0.1343 REMARK 3 S21: 0.0130 S22: 0.0321 S23: -0.1521 REMARK 3 S31: 0.1962 S32: 0.1285 S33: 0.0142 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF REMARK 3 THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO REMARK 3 ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. SULFATE (SO4) AND CITRATE (CIT) IONS FROM THE CRYSTALLIZATION REMARK 3 BUFFER AND GLYCEROL (GOL) FROM THE CRYO SOLUTION WERE MODELED REMARK 3 INTO THE STRUCTURE. REMARK 3 5. UNEXPLAINED ELECTRON DENSITY NEAR RESIDUES 9 AND 198 REMARK 3 WAS NOT MODELED. REMARK 4 REMARK 4 2RHA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044858. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35346 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 29.185 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.81600 REMARK 200 R SYM FOR SHELL (I) : 0.81600 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 2QTQ CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 1.6M (NH4)2SO4, 0.1M CITRATE REMARK 280 PH 5.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.63800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.41850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.41850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 83.45700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.41850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.41850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.81900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.41850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.41850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 83.45700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.41850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.41850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.81900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.63800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A REMARK 300 DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 111.27600 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 ASP A 4 REMARK 465 VAL A 5 REMARK 465 GLN A 6 REMARK 465 LYS A 7 REMARK 465 GLY A 8 REMARK 465 ASP A 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 12 CD OE1 OE2 REMARK 470 ARG A 44 NE CZ NH1 NH2 REMARK 470 SER A 49 OG REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 ARG A 95 CZ NH1 NH2 REMARK 470 GLU A 191 OE1 OE2 REMARK 470 GLN A 192 OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 155 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 172 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 172 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 177 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 85 -168.73 -114.18 REMARK 500 LEU A 137 61.58 38.77 REMARK 500 GLN A 186 65.83 -101.81 REMARK 500 ASP A 187 100.27 -59.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 223 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 224 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 225 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 226 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 229 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 376212 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE FOLLOWED BY THE TARGET SEQUENCE. DBREF 2RHA A 1 212 UNP Q2G9F6 Q2G9F6_NOVAD 1 212 SEQADV 2RHA GLY A 0 UNP Q2G9F6 EXPRESSION TAG SEQRES 1 A 213 GLY MSE SER SER ASP VAL GLN LYS GLY ASP ASN LEU GLU SEQRES 2 A 213 THR PRO GLY ALA ARG ASP LEU LEU LEU GLN THR ALA SER SEQRES 3 A 213 ASN ILE MSE ARG GLU GLY ASP VAL VAL ASP ILE SER LEU SEQRES 4 A 213 SER GLU LEU SER LEU ARG SER GLY LEU ASN SER ALA LEU SEQRES 5 A 213 VAL LYS TYR TYR PHE GLY ASN LYS ALA GLY LEU LEU LYS SEQRES 6 A 213 ALA LEU LEU ASP ARG ASP MSE GLU ASN ILE VAL LYS SER SEQRES 7 A 213 VAL ASP ALA LEU LEU ALA LYS ASP ASP MSE SER PRO GLU SEQRES 8 A 213 ALA LYS LEU ARG ARG HIS ILE SER LYS CYS ILE ASP THR SEQRES 9 A 213 TYR TYR ASP TYR PRO TYR LEU ASN ARG LEU LEU MSE ARG SEQRES 10 A 213 LEU VAL ARG ASP SER ASP GLU ALA GLU ALA LYS ARG ILE SEQRES 11 A 213 ALA ASP GLN TYR LEU LEU PRO LEU HIS ARG ALA TYR ASN SEQRES 12 A 213 ARG PHE ILE GLY GLU GLY VAL LYS ALA GLY VAL PHE ARG SEQRES 13 A 213 PRO ILE ASN PRO GLN LEU PHE TYR PHE THR VAL THR GLY SEQRES 14 A 213 ALA ALA ASP ARG PHE PHE SER ALA ARG LEU VAL LEU LYS SEQRES 15 A 213 HIS CYS PHE ASP GLN ASP THR LEU THR GLU GLN LEU ARG SEQRES 16 A 213 ASP SER TYR ARG GLU HIS THR VAL ASP PHE ILE MSE ALA SEQRES 17 A 213 GLY ILE LEU ALA HIS MODRES 2RHA MSE A 28 MET SELENOMETHIONINE MODRES 2RHA MSE A 71 MET SELENOMETHIONINE MODRES 2RHA MSE A 87 MET SELENOMETHIONINE MODRES 2RHA MSE A 115 MET SELENOMETHIONINE MODRES 2RHA MSE A 206 MET SELENOMETHIONINE HET MSE A 28 8 HET MSE A 71 16 HET MSE A 87 8 HET MSE A 115 8 HET MSE A 206 8 HET CL A 213 1 HET CL A 214 1 HET SO4 A 215 5 HET SO4 A 216 5 HET SO4 A 217 5 HET SO4 A 218 5 HET GOL A 219 6 HET GOL A 220 6 HET GOL A 221 6 HET GOL A 222 6 HET GOL A 223 6 HET GOL A 224 6 HET GOL A 225 6 HET GOL A 226 6 HET GOL A 227 6 HET GOL A 228 6 HET GOL A 229 6 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 CL 2(CL 1-) FORMUL 4 SO4 4(O4 S 2-) FORMUL 8 GOL 11(C3 H8 O3) FORMUL 19 HOH *202(H2 O) HELIX 1 1 GLY A 15 ASP A 32 1 18 HELIX 2 2 SER A 37 GLY A 46 1 10 HELIX 3 3 ASN A 48 GLY A 57 1 10 HELIX 4 4 ASN A 58 MSE A 71 1 14 HELIX 5 5 MSE A 71 ALA A 80 1 10 HELIX 6 6 LEU A 81 ALA A 83 5 3 HELIX 7 7 SER A 88 TYR A 107 1 20 HELIX 8 8 TYR A 109 SER A 121 1 13 HELIX 9 9 ASP A 122 LEU A 134 1 13 HELIX 10 10 LEU A 137 ALA A 151 1 15 HELIX 11 11 ASN A 158 ASP A 185 1 28 HELIX 12 12 THR A 190 LEU A 210 1 21 LINK C ILE A 27 N MSE A 28 1555 1555 1.32 LINK C MSE A 28 N ARG A 29 1555 1555 1.33 LINK C ASP A 70 N AMSE A 71 1555 1555 1.33 LINK C ASP A 70 N BMSE A 71 1555 1555 1.33 LINK C AMSE A 71 N GLU A 72 1555 1555 1.34 LINK C BMSE A 71 N GLU A 72 1555 1555 1.33 LINK C ASP A 86 N MSE A 87 1555 1555 1.34 LINK C MSE A 87 N SER A 88 1555 1555 1.32 LINK C LEU A 114 N MSE A 115 1555 1555 1.33 LINK C MSE A 115 N ARG A 116 1555 1555 1.33 LINK C ILE A 205 N MSE A 206 1555 1555 1.33 LINK C MSE A 206 N ALA A 207 1555 1555 1.32 SITE 1 AC1 1 ARG A 198 SITE 1 AC2 2 ASN A 158 HIS A 200 SITE 1 AC3 7 ARG A 29 GLU A 30 LYS A 181 HIS A 182 SITE 2 AC3 7 SO4 A 218 GOL A 226 HOH A 406 SITE 1 AC4 7 PRO A 14 GLY A 15 ALA A 16 ARG A 17 SITE 2 AC4 7 ASP A 18 HOH A 250 HOH A 324 SITE 1 AC5 6 LEU A 11 THR A 13 LEU A 51 TYR A 54 SITE 2 AC5 6 HIS A 200 HOH A 335 SITE 1 AC6 8 ARG A 29 TYR A 105 LYS A 181 ASP A 187 SITE 2 AC6 8 LEU A 189 SO4 A 215 GOL A 222 HOH A 406 SITE 1 AC7 4 VAL A 34 ARG A 119 HOH A 430 HOH A 431 SITE 1 AC8 3 SER A 37 LEU A 38 SER A 39 SITE 1 AC9 8 ALA A 130 ASP A 131 LEU A 134 LEU A 135 SITE 2 AC9 8 HIS A 138 GOL A 229 HOH A 299 HOH A 364 SITE 1 BC1 6 ARG A 29 ASP A 106 SO4 A 218 GOL A 226 SITE 2 BC1 6 HOH A 245 HOH A 406 SITE 1 BC2 3 THR A 190 GLU A 191 GLN A 192 SITE 1 BC3 4 ASN A 26 GLU A 30 ARG A 44 HOH A 326 SITE 1 BC4 11 ASN A 111 ARG A 112 MSE A 115 ASP A 171 SITE 2 BC4 11 ARG A 172 SER A 175 HOH A 242 HOH A 273 SITE 3 BC4 11 HOH A 290 HOH A 325 HOH A 428 SITE 1 BC5 5 ASN A 26 ARG A 29 GLU A 30 SO4 A 215 SITE 2 BC5 5 GOL A 222 SITE 1 BC6 3 SER A 88 ALA A 91 HOH A 380 SITE 1 BC7 6 LEU A 11 GLU A 12 ASN A 158 GLN A 160 SITE 2 BC7 6 HOH A 356 HOH A 368 SITE 1 BC8 6 LYS A 127 ALA A 130 ASP A 131 LEU A 134 SITE 2 BC8 6 GLN A 186 GOL A 221 CRYST1 102.837 102.837 111.276 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009724 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009724 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008987 0.00000