HEADER VIRAL PROTEIN/NUCLEAR PROTEIN 09-OCT-07 2RHK TITLE CRYSTAL STRUCTURE OF INFLUENZA A NS1A PROTEIN IN COMPLEX WITH F2F3 TITLE 2 FRAGMENT OF HUMAN CELLULAR FACTOR CPSF30, NORTHEAST STRUCTURAL TITLE 3 GENOMICS TARGETS OR8C AND HR6309A COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: NS1A EFFECTOR DOMAIN (UNP RESIDUES 85-215); COMPND 5 SYNONYM: NS1, NS1A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: F2F3 ZINC-BINDING DOMAINS (UNP RESIDUES 61-121); COMPND 11 SYNONYM: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30 KDA COMPND 12 SUBUNIT, CPSF 30 KDA SUBUNIT, NS1 EFFECTOR DOMAIN-BINDING PROTEIN 1, COMPND 13 NEB-1, NO ARCHES HOMOLOG, F2F3 ZINC-BINDING DOMAINS; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 11320; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PET21C; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PET14C KEYWDS INFLUENZA A, NONSTRUCTURAL PROTEIN, VIRAL PROTEIN: HOST COMPLEX, ZN KEYWDS 2 FINGER, ALTERNATIVE SPLICING, CYTOPLASM, HOST-VIRUS INTERACTION, KEYWDS 3 INTERFERON ANTIVIRAL SYSTEM EVASION, NUCLEUS, RNA-BINDING, KEYWDS 4 SUPPRESSOR OF RNA SILENCING, METAL-BINDING, MRNA PROCESSING, ZINC, KEYWDS 5 ZINC-FINGER, METAL BINDING PROTEIN, VIRAL PROTEIN-METAL BINDING KEYWDS 6 PROTEIN COMPLEX, VIRAL PROTEIN-NUCLEAR PROTEIN COMPLEX, STRUCTURAL KEYWDS 7 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL KEYWDS 8 GENOMICS CONSORTIUM, NESG EXPDTA X-RAY DIFFRACTION AUTHOR K.DAS,L.-C.MA,R.XIAO,B.RADVANSKY,J.ARAMINI,L.ZHAO,E.ARNOLD,R.M.KRUG, AUTHOR 2 G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 6 21-FEB-24 2RHK 1 REMARK REVDAT 5 20-OCT-21 2RHK 1 REMARK SEQADV REVDAT 4 31-MAR-10 2RHK 1 AUTHOR KEYWDS TITLE REVDAT 3 24-FEB-09 2RHK 1 VERSN REVDAT 2 23-SEP-08 2RHK 1 JRNL REVDAT 1 01-JUL-08 2RHK 0 JRNL AUTH K.DAS,L.C.MA,R.XIAO,B.RADVANSKY,J.ARAMINI,L.ZHAO,J.MARKLUND, JRNL AUTH 2 R.L.KUO,K.Y.TWU,E.ARNOLD,R.M.KRUG,G.T.MONTELIONE JRNL TITL STRUCTURAL BASIS FOR SUPPRESSION OF A HOST ANTIVIRAL JRNL TITL 2 RESPONSE BY INFLUENZA A VIRUS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 13093 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18725644 JRNL DOI 10.1073/PNAS.0805213105 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1225055.450 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 37096 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1159 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5620 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 170 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2911 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.66000 REMARK 3 B22 (A**2) : 6.66000 REMARK 3 B33 (A**2) : -13.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.26 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.130 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 53.03 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : NO3.PAR REMARK 3 PARAMETER FILE 5 : TRS.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NO3.TOP REMARK 3 TOPOLOGY FILE 5 : TRS.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RHK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044867. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-06; NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0; NULL REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; NULL REMARK 200 RADIATION SOURCE : NSLS; NULL REMARK 200 BEAMLINE : X25; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9800; NULL REMARK 200 MONOCHROMATOR : GRAPHITE; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37297 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -0.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M KNO3, 10% SUCROES, 0.1M SODIUM REMARK 280 ACITATE, PH 5.5, EVAPORATION, TEMPERATURE 293K, PH 5.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.69500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.34750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 154.04250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5870 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4870 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 50.96000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1830 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1810 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 84 REMARK 465 GLY A 204 REMARK 465 SER A 205 REMARK 465 SER A 206 REMARK 465 ASN A 207 REMARK 465 GLU A 208 REMARK 465 ASN A 209 REMARK 465 GLY A 210 REMARK 465 ARG A 211 REMARK 465 PRO A 212 REMARK 465 PRO A 213 REMARK 465 LEU A 214 REMARK 465 THR A 215 REMARK 465 LEU A 216 REMARK 465 GLU A 217 REMARK 465 HIS A 218 REMARK 465 HIS A 219 REMARK 465 HIS A 220 REMARK 465 HIS A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 MET B 84 REMARK 465 GLY B 204 REMARK 465 SER B 205 REMARK 465 SER B 206 REMARK 465 ASN B 207 REMARK 465 GLU B 208 REMARK 465 ASN B 209 REMARK 465 GLY B 210 REMARK 465 ARG B 211 REMARK 465 PRO B 212 REMARK 465 PRO B 213 REMARK 465 LEU B 214 REMARK 465 THR B 215 REMARK 465 LEU B 216 REMARK 465 GLU B 217 REMARK 465 HIS B 218 REMARK 465 HIS B 219 REMARK 465 HIS B 220 REMARK 465 HIS B 221 REMARK 465 HIS B 222 REMARK 465 HIS B 223 REMARK 465 MET C 50 REMARK 465 GLY C 51 REMARK 465 HIS C 52 REMARK 465 HIS C 53 REMARK 465 HIS C 54 REMARK 465 HIS C 55 REMARK 465 SER C 119 REMARK 465 LYS C 120 REMARK 465 ILE C 121 REMARK 465 MET D 50 REMARK 465 GLY D 51 REMARK 465 HIS D 52 REMARK 465 HIS D 53 REMARK 465 HIS D 54 REMARK 465 HIS D 55 REMARK 465 HIS D 56 REMARK 465 HIS D 57 REMARK 465 GLU D 118 REMARK 465 SER D 119 REMARK 465 LYS D 120 REMARK 465 ILE D 121 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 117 C - N - CD ANGL. DEV. = -13.0 DEGREES REMARK 500 PRO D 117 N - CA - C ANGL. DEV. = -16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 202 -36.16 -147.30 REMARK 500 GLU B 142 -60.62 -102.45 REMARK 500 SER B 165 10.77 -64.52 REMARK 500 HIS C 86 47.07 -103.58 REMARK 500 MET C 90 -9.33 -56.00 REMARK 500 HIS D 86 65.17 -104.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 68 SG REMARK 620 2 CYS C 76 SG 115.4 REMARK 620 3 CYS C 82 SG 109.5 111.2 REMARK 620 4 HIS C 86 NE2 111.9 102.7 105.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 96 SG REMARK 620 2 CYS C 105 SG 109.8 REMARK 620 3 CYS C 110 SG 114.3 108.5 REMARK 620 4 HIS C 114 NE2 116.6 103.0 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 68 SG REMARK 620 2 CYS D 76 SG 110.2 REMARK 620 3 CYS D 82 SG 110.0 113.7 REMARK 620 4 HIS D 86 NE2 115.2 98.5 108.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 96 SG REMARK 620 2 CYS D 105 SG 107.7 REMARK 620 3 CYS D 110 SG 115.6 108.1 REMARK 620 4 HIS D 114 NE2 115.8 102.8 105.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 C 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS D 11 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2D9N RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF CCCH TYPE ZINC-FINGER DOMAIN 2 IN CLEAVAGE REMARK 900 AND POLYADENYLATION SPECIFICITY FACTOR. REMARK 900 RELATED ID: 2GX9 RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF INFLUENZA VIRUS NS1 EFFECTOR DOMAIN. REMARK 900 RELATED ID: OR8C RELATED DB: TARGETDB REMARK 900 RELATED ID: HR6309A RELATED DB: TARGETDB DBREF 2RHK A 85 215 UNP P03495 NS1_IAUDO 85 215 DBREF 2RHK B 85 215 UNP P03495 NS1_IAUDO 85 215 DBREF 2RHK C 61 121 UNP O95639 CPSF4_HUMAN 61 121 DBREF 2RHK D 61 121 UNP O95639 CPSF4_HUMAN 61 121 SEQADV 2RHK MET A 84 UNP P03495 INITIATING METHIONINE SEQADV 2RHK LEU A 216 UNP P03495 EXPRESSION TAG SEQADV 2RHK GLU A 217 UNP P03495 EXPRESSION TAG SEQADV 2RHK HIS A 218 UNP P03495 EXPRESSION TAG SEQADV 2RHK HIS A 219 UNP P03495 EXPRESSION TAG SEQADV 2RHK HIS A 220 UNP P03495 EXPRESSION TAG SEQADV 2RHK HIS A 221 UNP P03495 EXPRESSION TAG SEQADV 2RHK HIS A 222 UNP P03495 EXPRESSION TAG SEQADV 2RHK HIS A 223 UNP P03495 EXPRESSION TAG SEQADV 2RHK MET B 84 UNP P03495 INITIATING METHIONINE SEQADV 2RHK LEU B 216 UNP P03495 EXPRESSION TAG SEQADV 2RHK GLU B 217 UNP P03495 EXPRESSION TAG SEQADV 2RHK HIS B 218 UNP P03495 EXPRESSION TAG SEQADV 2RHK HIS B 219 UNP P03495 EXPRESSION TAG SEQADV 2RHK HIS B 220 UNP P03495 EXPRESSION TAG SEQADV 2RHK HIS B 221 UNP P03495 EXPRESSION TAG SEQADV 2RHK HIS B 222 UNP P03495 EXPRESSION TAG SEQADV 2RHK HIS B 223 UNP P03495 EXPRESSION TAG SEQADV 2RHK MET C 50 UNP O95639 EXPRESSION TAG SEQADV 2RHK GLY C 51 UNP O95639 EXPRESSION TAG SEQADV 2RHK HIS C 52 UNP O95639 EXPRESSION TAG SEQADV 2RHK HIS C 53 UNP O95639 EXPRESSION TAG SEQADV 2RHK HIS C 54 UNP O95639 EXPRESSION TAG SEQADV 2RHK HIS C 55 UNP O95639 EXPRESSION TAG SEQADV 2RHK HIS C 56 UNP O95639 EXPRESSION TAG SEQADV 2RHK HIS C 57 UNP O95639 EXPRESSION TAG SEQADV 2RHK SER C 58 UNP O95639 EXPRESSION TAG SEQADV 2RHK HIS C 59 UNP O95639 EXPRESSION TAG SEQADV 2RHK MET C 60 UNP O95639 EXPRESSION TAG SEQADV 2RHK SER C 94 UNP O95639 PRO 94 ENGINEERED MUTATION SEQADV 2RHK MET D 50 UNP O95639 EXPRESSION TAG SEQADV 2RHK GLY D 51 UNP O95639 EXPRESSION TAG SEQADV 2RHK HIS D 52 UNP O95639 EXPRESSION TAG SEQADV 2RHK HIS D 53 UNP O95639 EXPRESSION TAG SEQADV 2RHK HIS D 54 UNP O95639 EXPRESSION TAG SEQADV 2RHK HIS D 55 UNP O95639 EXPRESSION TAG SEQADV 2RHK HIS D 56 UNP O95639 EXPRESSION TAG SEQADV 2RHK HIS D 57 UNP O95639 EXPRESSION TAG SEQADV 2RHK SER D 58 UNP O95639 EXPRESSION TAG SEQADV 2RHK HIS D 59 UNP O95639 EXPRESSION TAG SEQADV 2RHK MET D 60 UNP O95639 EXPRESSION TAG SEQADV 2RHK SER D 94 UNP O95639 PRO 94 ENGINEERED MUTATION SEQRES 1 A 140 MET PRO ALA SER ARG TYR ILE THR ASP MET THR ILE GLU SEQRES 2 A 140 GLU LEU SER ARG ASP TRP PHE MET LEU MET PRO LYS GLN SEQRES 3 A 140 LYS VAL GLU GLY PRO LEU CYS ILE ARG ILE ASP GLN ALA SEQRES 4 A 140 ILE MET ASP LYS ASN ILE MET LEU LYS ALA ASN PHE SER SEQRES 5 A 140 VAL ILE PHE ASP ARG LEU GLU THR LEU ILE LEU LEU ARG SEQRES 6 A 140 ALA PHE THR GLU GLU GLY ALA ILE VAL GLY GLU ILE SER SEQRES 7 A 140 PRO LEU PRO SER PHE PRO GLY HIS THR ILE GLU ASP VAL SEQRES 8 A 140 LYS ASN ALA ILE GLY VAL LEU ILE GLY GLY LEU GLU TRP SEQRES 9 A 140 ASN ASP ASN THR VAL ARG VAL SER LYS THR LEU GLN ARG SEQRES 10 A 140 PHE ALA TRP GLY SER SER ASN GLU ASN GLY ARG PRO PRO SEQRES 11 A 140 LEU THR LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 140 MET PRO ALA SER ARG TYR ILE THR ASP MET THR ILE GLU SEQRES 2 B 140 GLU LEU SER ARG ASP TRP PHE MET LEU MET PRO LYS GLN SEQRES 3 B 140 LYS VAL GLU GLY PRO LEU CYS ILE ARG ILE ASP GLN ALA SEQRES 4 B 140 ILE MET ASP LYS ASN ILE MET LEU LYS ALA ASN PHE SER SEQRES 5 B 140 VAL ILE PHE ASP ARG LEU GLU THR LEU ILE LEU LEU ARG SEQRES 6 B 140 ALA PHE THR GLU GLU GLY ALA ILE VAL GLY GLU ILE SER SEQRES 7 B 140 PRO LEU PRO SER PHE PRO GLY HIS THR ILE GLU ASP VAL SEQRES 8 B 140 LYS ASN ALA ILE GLY VAL LEU ILE GLY GLY LEU GLU TRP SEQRES 9 B 140 ASN ASP ASN THR VAL ARG VAL SER LYS THR LEU GLN ARG SEQRES 10 B 140 PHE ALA TRP GLY SER SER ASN GLU ASN GLY ARG PRO PRO SEQRES 11 B 140 LEU THR LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 72 MET GLY HIS HIS HIS HIS HIS HIS SER HIS MET SER GLY SEQRES 2 C 72 GLU LYS THR VAL VAL CYS LYS HIS TRP LEU ARG GLY LEU SEQRES 3 C 72 CYS LYS LYS GLY ASP GLN CYS GLU PHE LEU HIS GLU TYR SEQRES 4 C 72 ASP MET THR LYS MET SER GLU CYS TYR PHE TYR SER LYS SEQRES 5 C 72 PHE GLY GLU CYS SER ASN LYS GLU CYS PRO PHE LEU HIS SEQRES 6 C 72 ILE ASP PRO GLU SER LYS ILE SEQRES 1 D 72 MET GLY HIS HIS HIS HIS HIS HIS SER HIS MET SER GLY SEQRES 2 D 72 GLU LYS THR VAL VAL CYS LYS HIS TRP LEU ARG GLY LEU SEQRES 3 D 72 CYS LYS LYS GLY ASP GLN CYS GLU PHE LEU HIS GLU TYR SEQRES 4 D 72 ASP MET THR LYS MET SER GLU CYS TYR PHE TYR SER LYS SEQRES 5 D 72 PHE GLY GLU CYS SER ASN LYS GLU CYS PRO PHE LEU HIS SEQRES 6 D 72 ILE ASP PRO GLU SER LYS ILE HET NO3 A 2 4 HET NO3 A 3 4 HET NO3 A 4 4 HET NO3 A 5 4 HET ZN C 502 1 HET ZN C 501 1 HET NO3 C 1 4 HET ZN D 502 1 HET ZN D 501 1 HET TRS D 11 8 HETNAM NO3 NITRATE ION HETNAM ZN ZINC ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 5 NO3 5(N O3 1-) FORMUL 9 ZN 4(ZN 2+) FORMUL 14 TRS C4 H12 N O3 1+ FORMUL 15 HOH *185(H2 O) HELIX 1 1 THR A 94 ARG A 100 1 7 HELIX 2 2 THR A 170 ASN A 188 1 19 HELIX 3 3 SER A 195 ALA A 202 1 8 HELIX 4 4 THR B 94 ARG B 100 1 7 HELIX 5 5 THR B 170 ASN B 188 1 19 HELIX 6 6 SER B 195 ALA B 202 1 8 HELIX 7 7 CYS C 68 ARG C 73 1 6 HELIX 8 8 LYS C 78 CYS C 82 5 5 HELIX 9 9 CYS C 96 GLY C 103 1 8 HELIX 10 10 CYS D 68 ARG D 73 1 6 HELIX 11 11 LYS D 78 CYS D 82 5 5 HELIX 12 12 ASP D 89 MET D 93 5 5 HELIX 13 13 CYS D 96 GLY D 103 1 8 SHEET 1 A 6 ARG A 88 THR A 91 0 SHEET 2 A 6 ASN A 127 ILE A 137 -1 O PHE A 134 N ILE A 90 SHEET 3 A 6 ARG A 140 THR A 151 -1 O GLU A 142 N SER A 135 SHEET 4 A 6 ILE A 156 PRO A 162 -1 O VAL A 157 N ALA A 149 SHEET 5 A 6 LEU A 115 ASP A 120 -1 N CYS A 116 O SER A 161 SHEET 6 A 6 PRO A 107 GLU A 112 -1 N LYS A 110 O ILE A 117 SHEET 1 B 3 ARG A 88 THR A 91 0 SHEET 2 B 3 ASN A 127 ILE A 137 -1 O PHE A 134 N ILE A 90 SHEET 3 B 3 THR A 191 VAL A 194 1 O THR A 191 N ILE A 128 SHEET 1 C 6 ARG B 88 THR B 91 0 SHEET 2 C 6 ASN B 127 ILE B 137 -1 O PHE B 134 N ILE B 90 SHEET 3 C 6 ARG B 140 PHE B 150 -1 O GLU B 142 N SER B 135 SHEET 4 C 6 ILE B 156 PRO B 162 -1 O GLY B 158 N ALA B 149 SHEET 5 C 6 LEU B 115 ASP B 120 -1 N CYS B 116 O SER B 161 SHEET 6 C 6 PRO B 107 GLU B 112 -1 N GLU B 112 O LEU B 115 SHEET 1 D 3 ARG B 88 THR B 91 0 SHEET 2 D 3 ASN B 127 ILE B 137 -1 O PHE B 134 N ILE B 90 SHEET 3 D 3 THR B 191 VAL B 194 1 O THR B 191 N ILE B 128 LINK SG CYS C 68 ZN ZN C 501 1555 1555 2.42 LINK SG CYS C 76 ZN ZN C 501 1555 1555 2.36 LINK SG CYS C 82 ZN ZN C 501 1555 1555 2.42 LINK NE2 HIS C 86 ZN ZN C 501 1555 1555 2.18 LINK SG CYS C 96 ZN ZN C 502 1555 1555 2.35 LINK SG CYS C 105 ZN ZN C 502 1555 1555 2.38 LINK SG CYS C 110 ZN ZN C 502 1555 1555 2.34 LINK NE2 HIS C 114 ZN ZN C 502 1555 1555 2.15 LINK SG CYS D 68 ZN ZN D 501 1555 1555 2.50 LINK SG CYS D 76 ZN ZN D 501 1555 1555 2.35 LINK SG CYS D 82 ZN ZN D 501 1555 1555 2.41 LINK NE2 HIS D 86 ZN ZN D 501 1555 1555 2.20 LINK SG CYS D 96 ZN ZN D 502 1555 1555 2.30 LINK SG CYS D 105 ZN ZN D 502 1555 1555 2.42 LINK SG CYS D 110 ZN ZN D 502 1555 1555 2.38 LINK NE2 HIS D 114 ZN ZN D 502 1555 1555 2.13 SITE 1 AC1 3 LYS A 126 THR A 151 GLU A 153 SITE 1 AC2 2 GLU A 186 TRP A 203 SITE 1 AC3 5 ARG A 88 ARG A 200 PHE A 201 LYS B 175 SITE 2 AC3 5 TRP B 203 SITE 1 AC4 6 ARG A 88 PHE A 138 ASP A 139 ILE B 182 SITE 2 AC4 6 GLY B 183 GLU B 186 SITE 1 AC5 4 CYS C 96 CYS C 105 CYS C 110 HIS C 114 SITE 1 AC6 4 CYS C 68 CYS C 76 CYS C 82 HIS C 86 SITE 1 AC7 5 PRO B 167 TYR C 99 GLY C 103 ASP C 116 SITE 2 AC7 5 PRO C 117 SITE 1 AC8 4 CYS D 96 CYS D 105 CYS D 110 HIS D 114 SITE 1 AC9 4 CYS D 68 CYS D 76 CYS D 82 HIS D 86 SITE 1 BC1 5 PHE A 138 ARG A 140 TRP B 187 GLU D 95 SITE 2 BC1 5 TYR D 97 CRYST1 50.960 50.960 205.390 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019623 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019623 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004869 0.00000