HEADER HYDROLASE 10-OCT-07 2RI9 TITLE PENICILLIUM CITRINUM ALPHA-1,2-MANNOSIDASE IN COMPLEX WITH A SUBSTRATE TITLE 2 ANALOG CAVEAT 2RI9 MAN D 3 HAS WRONG CHIRALITY AT ATOM C1 MAN H 3 HAS WRONG CAVEAT 2 2RI9 CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MAN(9)-ALPHA-MANNOSIDASE; COMPND 5 EC: 3.2.1.113; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PENICILLIUM CITRINUM; SOURCE 3 ORGANISM_TAXID: 5077; SOURCE 4 GENE: MSDC; SOURCE 5 EXPRESSION_SYSTEM: ASPERGILLUS ORYZAE; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 5062; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: MS2; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTAPM1 KEYWDS ALTERNATIVE CONFORMATIONS, MODULATION OF ACTIVITY, GLYCOPROTEIN, KEYWDS 2 GLYCOSIDASE, HYDROLASE, SECRETED EXPDTA X-RAY DIFFRACTION AUTHOR Y.D.LOBSANOV,T.YOSHIDA,T.DESMET,W.NERINCKX,P.YIP,M.CLAEYSSENS, AUTHOR 2 A.HERSCOVICS,P.L.HOWELL REVDAT 4 29-JUL-20 2RI9 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 13-JUL-11 2RI9 1 VERSN REVDAT 2 24-FEB-09 2RI9 1 VERSN REVDAT 1 25-MAR-08 2RI9 0 JRNL AUTH Y.D.LOBSANOV,T.YOSHIDA,T.DESMET,W.NERINCKX,P.YIP, JRNL AUTH 2 M.CLAEYSSENS,A.HERSCOVICS,P.L.HOWELL JRNL TITL MODULATION OF ACTIVITY BY ARG407: STRUCTURE OF A FUNGAL JRNL TITL 2 ALPHA-1,2-MANNOSIDASE IN COMPLEX WITH A SUBSTRATE ANALOGUE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 64 227 2008 JRNL REFN ISSN 0907-4449 JRNL PMID 18323617 JRNL DOI 10.1107/S0907444907065572 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 242423.450 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 69761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4966 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7418 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 514 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7450 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 304 REMARK 3 SOLVENT ATOMS : 717 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.80000 REMARK 3 B22 (A**2) : -0.42000 REMARK 3 B33 (A**2) : 1.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.29000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.18 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.23 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.930 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.340 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.990 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.850 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.570 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 72.62 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NEW_GOL.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : CARB+MAM+LYX_NEW.TOP REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : NEW_GOL.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RI9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044890. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70492 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.26600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-18% PEG 6000, 0.1M HEPES, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.49850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 65 O HOH A 677 2.00 REMARK 500 O HOH B 111 O HOH B 704 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A1059 -33.54 -130.58 REMARK 500 ARG A1126 -62.92 -96.17 REMARK 500 ASN A1148 60.13 -169.72 REMARK 500 HIS A1186 11.64 91.04 REMARK 500 LEU A1202 -31.20 -132.29 REMARK 500 ASP A1266 -51.99 -121.21 REMARK 500 ASP A1267 -79.47 -16.13 REMARK 500 ARG A1321 -3.97 75.85 REMARK 500 CYS A1332 1.06 -65.04 REMARK 500 TRP A1379 22.92 -143.07 REMARK 500 VAL A1405 42.62 -102.29 REMARK 500 ALA A1509 154.71 -49.84 REMARK 500 ASN B2077 14.96 57.88 REMARK 500 PHE B2111 7.52 -60.29 REMARK 500 ARG B2126 -61.51 -98.01 REMARK 500 TYR B2135 -71.75 -56.62 REMARK 500 GLN B2139 5.03 -66.64 REMARK 500 PRO B2141 -6.09 -56.95 REMARK 500 ALA B2142 43.17 -140.82 REMARK 500 ASN B2144 64.91 -112.23 REMARK 500 ASN B2148 96.30 -53.05 REMARK 500 PRO B2173 -74.16 -53.35 REMARK 500 HIS B2186 19.75 49.43 REMARK 500 THR B2213 -66.67 -98.02 REMARK 500 ASP B2215 79.65 -50.40 REMARK 500 GLU B2216 -13.05 -44.57 REMARK 500 GLU B2238 67.70 -118.05 REMARK 500 SER B2261 159.35 175.46 REMARK 500 ASP B2266 -45.83 -131.00 REMARK 500 ASP B2267 -74.29 -18.18 REMARK 500 ASP B2280 95.32 -162.33 REMARK 500 LYS B2282 -73.21 -61.61 REMARK 500 SER B2319 110.97 -161.20 REMARK 500 ASN B2320 77.72 47.51 REMARK 500 ARG B2321 17.56 55.36 REMARK 500 LEU B2325 51.60 -91.37 REMARK 500 CYS B2332 2.26 -60.41 REMARK 500 LYS B2371 23.79 82.76 REMARK 500 LYS B2383 28.64 -146.17 REMARK 500 VAL B2405 44.57 -104.84 REMARK 500 ASN B2457 26.15 48.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 AUTHORS STATE THAT ALPHA-D-LYXOSIDE WAS OBSERVED AS A MOIETY OF REMARK 600 METHYL-ALPHA-D-LYXOPYRANOSYL-(1',2)-ALPHA-D-MANNOPYRANOSIDE, A REMARK 600 SUBSTRATE ANALOG FOR P.CITRINUM ALPHA-1,2-MANNOSIDASE. IN THIS REMARK 600 ENZYME-SUBSTRATE COMPLEX STRUCTURE THE LYXOSIDE WAS FOUND IN THE REMARK 600 NON-STANDARD 1C4 CHAIR CONFORMATION (SEE PRIMARY CITATION FOR REMARK 600 DETAIL). REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1550 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 154 O REMARK 620 2 HOH A 155 O 85.6 REMARK 620 3 HOH A 156 O 111.4 71.3 REMARK 620 4 HOH A 157 O 74.4 130.6 74.9 REMARK 620 5 THR A1501 O 89.5 143.6 142.5 81.9 REMARK 620 6 THR A1501 OG1 146.5 126.0 74.3 75.7 71.7 REMARK 620 7 GOL A1903 O1 134.6 78.1 102.9 145.2 80.1 70.5 REMARK 620 8 GOL A1903 O2 74.1 72.7 142.9 138.3 71.3 122.2 60.7 REMARK 620 9 LDY F 2 O2 134.9 72.7 98.5 148.3 86.0 72.7 6.0 62.0 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2551 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 159 O REMARK 620 2 HOH B 160 O 73.7 REMARK 620 3 HOH B 161 O 135.7 83.1 REMARK 620 4 HOH B 187 O 82.9 107.8 68.8 REMARK 620 5 THR B2501 O 74.1 89.6 144.0 146.0 REMARK 620 6 THR B2501 OG1 73.3 145.1 129.5 78.9 70.8 REMARK 620 7 GOL B2903 O2 129.3 73.0 75.5 143.8 68.6 121.9 REMARK 620 8 GOL B2903 O1 143.0 133.3 79.1 105.3 80.6 73.1 60.9 REMARK 620 9 LDY J 2 O2 142.3 136.8 78.5 101.4 83.1 70.9 64.6 4.0 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KKT RELATED DB: PDB REMARK 900 RELATED ID: 1KRE RELATED DB: PDB REMARK 900 RELATED ID: 1KRF RELATED DB: PDB REMARK 900 RELATED ID: 2RI8 RELATED DB: PDB DBREF 2RI9 A 1036 1510 UNP P31723 MAN12_PENCI 36 510 DBREF 2RI9 B 2036 2510 UNP P31723 MAN12_PENCI 36 510 SEQRES 1 A 475 SER ASN GLN ALA LYS ALA ASP ALA VAL LYS GLU ALA PHE SEQRES 2 A 475 GLN HIS ALA TRP ASN GLY TYR MET LYS TYR ALA PHE PRO SEQRES 3 A 475 HIS ASP GLU LEU THR PRO VAL SER ASN GLY HIS ALA ASP SEQRES 4 A 475 SER ARG ASN GLY TRP GLY ALA SER ALA VAL ASP ALA LEU SEQRES 5 A 475 SER THR ALA VAL ILE MET GLY LYS ALA ASP VAL VAL ASN SEQRES 6 A 475 ALA ILE LEU GLU HIS VAL ALA ASP ILE ASP PHE SER LYS SEQRES 7 A 475 THR SER ASP THR VAL SER LEU PHE GLU THR THR ILE ARG SEQRES 8 A 475 TYR LEU ALA GLY MET LEU SER GLY TYR ASP LEU LEU GLN SEQRES 9 A 475 GLY PRO ALA LYS ASN LEU VAL ASP ASN GLN ASP LEU ILE SEQRES 10 A 475 ASP GLY LEU LEU ASP GLN SER ARG ASN LEU ALA ASP VAL SEQRES 11 A 475 LEU LYS PHE ALA PHE ASP THR PRO SER GLY VAL PRO TYR SEQRES 12 A 475 ASN ASN ILE ASN ILE THR SER HIS GLY ASN ASP GLY ALA SEQRES 13 A 475 THR THR ASN GLY LEU ALA VAL THR GLY THR LEU VAL LEU SEQRES 14 A 475 GLU TRP THR ARG LEU SER ASP LEU THR GLY ASP GLU GLU SEQRES 15 A 475 TYR ALA LYS LEU SER GLN LYS ALA GLU SER TYR LEU LEU SEQRES 16 A 475 LYS PRO GLN PRO SER SER SER GLU PRO PHE PRO GLY LEU SEQRES 17 A 475 VAL GLY SER SER ILE ASN ILE ASN ASP GLY GLN PHE ALA SEQRES 18 A 475 ASP SER ARG VAL SER TRP ASN GLY GLY ASP ASP SER PHE SEQRES 19 A 475 TYR GLU TYR LEU ILE LYS MET TYR VAL TYR ASP PRO LYS SEQRES 20 A 475 ARG PHE GLU THR TYR LYS ASP ARG TRP VAL LEU ALA ALA SEQRES 21 A 475 GLU SER THR ILE LYS HIS LEU LYS SER HIS PRO LYS SER SEQRES 22 A 475 ARG PRO ASP LEU THR PHE LEU SER SER TYR SER ASN ARG SEQRES 23 A 475 ASN TYR ASP LEU SER SER GLN HIS LEU THR CYS PHE ASP SEQRES 24 A 475 GLY GLY SER PHE LEU LEU GLY GLY THR VAL LEU ASP ARG SEQRES 25 A 475 GLN ASP PHE ILE ASP PHE GLY LEU GLU LEU VAL ASP GLY SEQRES 26 A 475 CYS GLU ALA THR TYR ASN SER THR LEU THR LYS ILE GLY SEQRES 27 A 475 PRO ASP SER TRP GLY TRP ASP PRO LYS LYS VAL PRO SER SEQRES 28 A 475 ASP GLN LYS GLU PHE TYR GLU LYS ALA GLY PHE TYR ILE SEQRES 29 A 475 SER SER GLY SER TYR VAL LEU ARG PRO GLU VAL ILE GLU SEQRES 30 A 475 SER PHE TYR TYR ALA HIS ARG VAL THR GLY LYS GLU ILE SEQRES 31 A 475 TYR ARG ASP TRP VAL TRP ASN ALA PHE VAL ALA ILE ASN SEQRES 32 A 475 SER THR CYS ARG THR ASP SER GLY PHE ALA ALA VAL SER SEQRES 33 A 475 ASP VAL ASN LYS ALA ASN GLY GLY SER LYS TYR ASP ASN SEQRES 34 A 475 GLN GLU SER PHE LEU PHE ALA GLU VAL MET LYS TYR SER SEQRES 35 A 475 TYR LEU ALA HIS SER GLU ASP ALA ALA TRP GLN VAL GLN SEQRES 36 A 475 LYS GLY GLY LYS ASN THR PHE VAL TYR ASN THR GLU ALA SEQRES 37 A 475 HIS PRO ILE SER VAL ALA ARG SEQRES 1 B 475 SER ASN GLN ALA LYS ALA ASP ALA VAL LYS GLU ALA PHE SEQRES 2 B 475 GLN HIS ALA TRP ASN GLY TYR MET LYS TYR ALA PHE PRO SEQRES 3 B 475 HIS ASP GLU LEU THR PRO VAL SER ASN GLY HIS ALA ASP SEQRES 4 B 475 SER ARG ASN GLY TRP GLY ALA SER ALA VAL ASP ALA LEU SEQRES 5 B 475 SER THR ALA VAL ILE MET GLY LYS ALA ASP VAL VAL ASN SEQRES 6 B 475 ALA ILE LEU GLU HIS VAL ALA ASP ILE ASP PHE SER LYS SEQRES 7 B 475 THR SER ASP THR VAL SER LEU PHE GLU THR THR ILE ARG SEQRES 8 B 475 TYR LEU ALA GLY MET LEU SER GLY TYR ASP LEU LEU GLN SEQRES 9 B 475 GLY PRO ALA LYS ASN LEU VAL ASP ASN GLN ASP LEU ILE SEQRES 10 B 475 ASP GLY LEU LEU ASP GLN SER ARG ASN LEU ALA ASP VAL SEQRES 11 B 475 LEU LYS PHE ALA PHE ASP THR PRO SER GLY VAL PRO TYR SEQRES 12 B 475 ASN ASN ILE ASN ILE THR SER HIS GLY ASN ASP GLY ALA SEQRES 13 B 475 THR THR ASN GLY LEU ALA VAL THR GLY THR LEU VAL LEU SEQRES 14 B 475 GLU TRP THR ARG LEU SER ASP LEU THR GLY ASP GLU GLU SEQRES 15 B 475 TYR ALA LYS LEU SER GLN LYS ALA GLU SER TYR LEU LEU SEQRES 16 B 475 LYS PRO GLN PRO SER SER SER GLU PRO PHE PRO GLY LEU SEQRES 17 B 475 VAL GLY SER SER ILE ASN ILE ASN ASP GLY GLN PHE ALA SEQRES 18 B 475 ASP SER ARG VAL SER TRP ASN GLY GLY ASP ASP SER PHE SEQRES 19 B 475 TYR GLU TYR LEU ILE LYS MET TYR VAL TYR ASP PRO LYS SEQRES 20 B 475 ARG PHE GLU THR TYR LYS ASP ARG TRP VAL LEU ALA ALA SEQRES 21 B 475 GLU SER THR ILE LYS HIS LEU LYS SER HIS PRO LYS SER SEQRES 22 B 475 ARG PRO ASP LEU THR PHE LEU SER SER TYR SER ASN ARG SEQRES 23 B 475 ASN TYR ASP LEU SER SER GLN HIS LEU THR CYS PHE ASP SEQRES 24 B 475 GLY GLY SER PHE LEU LEU GLY GLY THR VAL LEU ASP ARG SEQRES 25 B 475 GLN ASP PHE ILE ASP PHE GLY LEU GLU LEU VAL ASP GLY SEQRES 26 B 475 CYS GLU ALA THR TYR ASN SER THR LEU THR LYS ILE GLY SEQRES 27 B 475 PRO ASP SER TRP GLY TRP ASP PRO LYS LYS VAL PRO SER SEQRES 28 B 475 ASP GLN LYS GLU PHE TYR GLU LYS ALA GLY PHE TYR ILE SEQRES 29 B 475 SER SER GLY SER TYR VAL LEU ARG PRO GLU VAL ILE GLU SEQRES 30 B 475 SER PHE TYR TYR ALA HIS ARG VAL THR GLY LYS GLU ILE SEQRES 31 B 475 TYR ARG ASP TRP VAL TRP ASN ALA PHE VAL ALA ILE ASN SEQRES 32 B 475 SER THR CYS ARG THR ASP SER GLY PHE ALA ALA VAL SER SEQRES 33 B 475 ASP VAL ASN LYS ALA ASN GLY GLY SER LYS TYR ASP ASN SEQRES 34 B 475 GLN GLU SER PHE LEU PHE ALA GLU VAL MET LYS TYR SER SEQRES 35 B 475 TYR LEU ALA HIS SER GLU ASP ALA ALA TRP GLN VAL GLN SEQRES 36 B 475 LYS GLY GLY LYS ASN THR PHE VAL TYR ASN THR GLU ALA SEQRES 37 B 475 HIS PRO ILE SER VAL ALA ARG MODRES 2RI9 ASN A 1182 ASN GLYCOSYLATION SITE MODRES 2RI9 ASN A 1366 ASN GLYCOSYLATION SITE MODRES 2RI9 ASN A 1438 ASN GLYCOSYLATION SITE MODRES 2RI9 ASN B 2182 ASN GLYCOSYLATION SITE MODRES 2RI9 ASN B 2366 ASN GLYCOSYLATION SITE MODRES 2RI9 ASN B 2438 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NDG D 2 14 HET MAN D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET NAG E 1 14 HET NAG E 2 14 HET MMA F 1 13 HET LDY F 2 9 HET NAG G 1 14 HET NAG G 2 14 HET NAG H 1 14 HET NDG H 2 14 HET MAN H 3 11 HET MAN H 4 11 HET MAN H 5 11 HET NAG I 1 14 HET NDG I 2 14 HET MMA J 1 13 HET LDY J 2 9 HET CA A1550 1 HET GOL A1902 6 HET GOL A1903 6 HET CA B2551 1 HET GOL B2902 6 HET GOL B2903 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM MMA METHYL ALPHA-D-MANNOPYRANOSIDE HETNAM LDY ALPHA-D-LYXOPYRANOSE HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 9(C8 H15 N O6) FORMUL 4 NDG 3(C8 H15 N O6) FORMUL 4 MAN 6(C6 H12 O6) FORMUL 6 MMA 2(C7 H14 O6) FORMUL 6 LDY 2(C5 H10 O5) FORMUL 11 CA 2(CA 2+) FORMUL 12 GOL 4(C3 H8 O3) FORMUL 17 HOH *717(H2 O) HELIX 1 1 SER A 1036 ALA A 1059 1 24 HELIX 2 2 GLY A 1080 GLY A 1094 1 15 HELIX 3 3 LYS A 1095 ILE A 1109 1 15 HELIX 4 4 LEU A 1120 GLY A 1140 1 21 HELIX 5 5 ASN A 1148 LYS A 1167 1 20 HELIX 6 6 PHE A 1168 ASP A 1171 5 4 HELIX 7 7 LEU A 1196 THR A 1201 1 6 HELIX 8 8 LEU A 1202 GLY A 1214 1 13 HELIX 9 9 GLU A 1216 LYS A 1231 1 16 HELIX 10 10 PRO A 1234 GLU A 1238 5 5 HELIX 11 11 ASP A 1266 ASP A 1280 1 15 HELIX 12 12 PHE A 1284 LEU A 1302 1 19 HELIX 13 13 LEU A 1330 CYS A 1332 5 3 HELIX 14 14 PHE A 1333 ASP A 1346 1 14 HELIX 15 15 ARG A 1347 SER A 1367 1 21 HELIX 16 16 PRO A 1385 ASP A 1387 5 3 HELIX 17 17 GLN A 1388 GLY A 1396 1 9 HELIX 18 18 PRO A 1408 GLY A 1422 1 15 HELIX 19 19 LYS A 1423 CYS A 1441 1 19 HELIX 20 20 LYS A 1455 GLY A 1459 5 5 HELIX 21 21 SER A 1467 GLU A 1472 1 6 HELIX 22 22 GLU A 1472 ALA A 1480 1 9 HELIX 23 23 SER B 2036 ALA B 2059 1 24 HELIX 24 24 GLY B 2080 GLY B 2094 1 15 HELIX 25 25 LYS B 2095 ILE B 2109 1 15 HELIX 26 26 LEU B 2120 GLN B 2139 1 20 HELIX 27 27 ASN B 2148 LYS B 2167 1 20 HELIX 28 28 PHE B 2168 ASP B 2171 5 4 HELIX 29 29 LEU B 2196 GLY B 2200 1 5 HELIX 30 30 LEU B 2202 GLY B 2214 1 13 HELIX 31 31 GLU B 2216 LYS B 2231 1 16 HELIX 32 32 PRO B 2234 GLU B 2238 5 5 HELIX 33 33 ASP B 2266 ASP B 2280 1 15 HELIX 34 34 PHE B 2284 LEU B 2302 1 19 HELIX 35 35 LEU B 2330 CYS B 2332 5 3 HELIX 36 36 PHE B 2333 LEU B 2345 1 13 HELIX 37 37 ARG B 2347 SER B 2367 1 21 HELIX 38 38 PRO B 2385 ASP B 2387 5 3 HELIX 39 39 GLN B 2388 GLY B 2396 1 9 HELIX 40 40 PRO B 2408 GLY B 2422 1 15 HELIX 41 41 LYS B 2423 CYS B 2441 1 19 HELIX 42 42 LYS B 2455 GLY B 2459 5 5 HELIX 43 43 SER B 2467 GLU B 2472 1 6 HELIX 44 44 GLU B 2472 ALA B 2480 1 9 SHEET 1 A 2 GLU A1064 THR A1066 0 SHEET 2 A 2 GLY A1071 ALA A1073 -1 O ALA A1073 N GLU A1064 SHEET 1 B 2 VAL A1118 SER A1119 0 SHEET 2 B 2 ASN A1180 ILE A1181 -1 O ILE A1181 N VAL A1118 SHEET 1 C 2 THR A1193 GLY A1195 0 SHEET 2 C 2 SER A1247 ASN A1249 -1 O ILE A1248 N ASN A1194 SHEET 1 D 2 LYS A1303 SER A1304 0 SHEET 2 D 2 PHE A1314 LEU A1315 -1 O PHE A1314 N SER A1304 SHEET 1 E 2 SER A1317 SER A1319 0 SHEET 2 E 2 ASN A1322 ASP A1324 -1 O ASN A1322 N SER A1319 SHEET 1 F 3 SER A1326 GLN A1328 0 SHEET 2 F 3 SER A1376 GLY A1378 -1 O TRP A1377 N SER A1327 SHEET 3 F 3 TYR A1398 SER A1401 -1 O TYR A1398 N GLY A1378 SHEET 1 G 2 PHE A1497 TYR A1499 0 SHEET 2 G 2 PRO A1505 SER A1507 -1 O ILE A1506 N VAL A1498 SHEET 1 H 2 GLU B2064 THR B2066 0 SHEET 2 H 2 GLY B2071 ALA B2073 -1 O ALA B2073 N GLU B2064 SHEET 1 I 2 VAL B2118 SER B2119 0 SHEET 2 I 2 ASN B2180 ILE B2181 -1 O ILE B2181 N VAL B2118 SHEET 1 J 2 THR B2193 GLY B2195 0 SHEET 2 J 2 SER B2247 ASN B2249 -1 O ILE B2248 N ASN B2194 SHEET 1 K 2 SER B2317 TYR B2318 0 SHEET 2 K 2 TYR B2323 ASP B2324 -1 O ASP B2324 N SER B2317 SHEET 1 L 3 SER B2326 GLN B2328 0 SHEET 2 L 3 SER B2376 GLY B2378 -1 O TRP B2377 N SER B2327 SHEET 3 L 3 TYR B2398 SER B2401 -1 O SER B2400 N SER B2376 SHEET 1 M 2 PHE B2497 TYR B2499 0 SHEET 2 M 2 PRO B2505 SER B2507 -1 O ILE B2506 N VAL B2498 SSBOND 1 CYS A 1332 CYS A 1361 1555 1555 2.06 SSBOND 2 CYS B 2332 CYS B 2361 1555 1555 2.04 LINK ND2 ASN A1182 C1 NAG C 1 1555 1555 1.46 LINK ND2 ASN A1366 C1 NAG D 1 1555 1555 1.46 LINK ND2 ASN A1438 C1 NAG E 1 1555 1555 1.46 LINK ND2 ASN B2182 C1 NAG G 1 1555 1555 1.45 LINK ND2 ASN B2366 C1 NAG H 1 1555 1555 1.46 LINK ND2 ASN B2438 C1 NAG I 1 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.38 LINK O4 NAG D 1 C1 NDG D 2 1555 1555 1.41 LINK O4 NDG D 2 C1 MAN D 3 1555 1555 1.40 LINK O3 MAN D 3 C1 MAN D 4 1555 1555 1.39 LINK O6 MAN D 3 C1 MAN D 5 1555 1555 1.40 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.40 LINK O2 AMMA F 1 C1 ALDY F 2 1555 1555 1.40 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.39 LINK O4 NAG H 1 C1 NDG H 2 1555 1555 1.40 LINK O4 NDG H 2 C1 MAN H 3 1555 1555 1.39 LINK O3 MAN H 3 C1 MAN H 4 1555 1555 1.40 LINK O6 MAN H 3 C1 MAN H 5 1555 1555 1.40 LINK O4 NAG I 1 C1 NDG I 2 1555 1555 1.40 LINK O2 AMMA J 1 C1 ALDY J 2 1555 1555 1.40 LINK O HOH A 154 CA CA A1550 1555 1555 2.49 LINK O HOH A 155 CA CA A1550 1555 1555 2.49 LINK O HOH A 156 CA CA A1550 1555 1555 2.62 LINK O HOH A 157 CA CA A1550 1555 1555 2.57 LINK O THR A1501 CA CA A1550 1555 1555 2.53 LINK OG1 THR A1501 CA CA A1550 1555 1555 2.58 LINK CA CA A1550 O1 BGOL A1903 1555 1555 2.76 LINK CA CA A1550 O2 BGOL A1903 1555 1555 2.72 LINK CA CA A1550 O2 ALDY F 2 1555 1555 2.59 LINK CA CA A1550 O3 ALDY F 2 1555 1555 2.57 LINK O HOH B 159 CA CA B2551 1555 1555 2.75 LINK O HOH B 160 CA CA B2551 1555 1555 2.57 LINK O HOH B 161 CA CA B2551 1555 1555 2.62 LINK O HOH B 187 CA CA B2551 1555 1555 2.80 LINK O THR B2501 CA CA B2551 1555 1555 2.59 LINK OG1 THR B2501 CA CA B2551 1555 1555 2.69 LINK CA CA B2551 O2 BGOL B2903 1555 1555 2.79 LINK CA CA B2551 O1 BGOL B2903 1555 1555 2.81 LINK CA CA B2551 O2 ALDY J 2 1555 1555 2.67 LINK CA CA B2551 O3 ALDY J 2 1555 1555 2.67 CISPEP 1 PHE A 1060 PRO A 1061 0 0.02 CISPEP 2 GLN A 1233 PRO A 1234 0 -0.31 CISPEP 3 PHE B 2060 PRO B 2061 0 -0.33 CISPEP 4 GLN B 2233 PRO B 2234 0 0.33 CRYST1 56.487 110.997 86.235 90.00 99.17 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017703 0.000000 0.002858 0.00000 SCALE2 0.000000 0.009009 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011746 0.00000