HEADER UNKNOWN FUNCTION 08-DEC-07 2RN7 TITLE NMR SOLUTION STRUCTURE OF TNPE PROTEIN FROM SHIGELLA FLEXNERI. TITLE 2 NORTHEAST STRUCTURAL GENOMICS TARGET SFR125 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IS629 ORFA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_TAXID: 623; SOURCE 4 GENE: TNPE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 PMGK; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS HELIX, ALL ALPHA, UNKNOWN FUNCTION, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, NESG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.A.RAMELOT,J.R.CORT,A.SEMESI,M.GARCIA,A.A.YEE,C.H.ARROWSMITH, AUTHOR 2 M.A.KENNEDY,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 5 29-MAY-24 2RN7 1 REMARK REVDAT 4 16-MAR-22 2RN7 1 REMARK REVDAT 3 07-APR-10 2RN7 1 AUTHOR REVDAT 2 24-FEB-09 2RN7 1 VERSN REVDAT 1 15-JAN-08 2RN7 0 JRNL AUTH T.A.RAMELOT,J.R.CORT,A.SEMESI,M.GARCIA,A.YEE,C.H.ARROWSMITH, JRNL AUTH 2 M.A.KENNEDY JRNL TITL NMR SOLUTION STRUCTURE OF TNPE PROTEIN FROM SHIGELLA JRNL TITL 2 FLEXNERI. NORTHEAST STRUCTURAL GENOMICS TARGET SFR125 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE NMRPIPE_LINUX, CNS 1.1 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: XPLOR-NIH, CNS REMARK 4 REMARK 4 2RN7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000150055. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.7 REMARK 210 IONIC STRENGTH : .5 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM [U-100% 13C; U-100% 15N] REMARK 210 TNPE PROTEIN, 10MM TRIS, 500MM REMARK 210 SODIUM CHLORIDE, 10MM DTT, REMARK 210 0.01MM ZN+2, 0.01% SODIUM AZIDE, REMARK 210 1MM BENZAMIDINE, 1X PROTEASE REMARK 210 INHIBITOR COCKTAIL, 90% H2O/10% REMARK 210 D2O; 1MM [U-7% 13C; U-100% 15N] REMARK 210 TNPE PROTEIN, 10MM TRIS, 500MM REMARK 210 SODIUM CHLORIDE, 10MM DTT, REMARK 210 0.01MM ZN+2, 0.01% SODIUM AZIDE, REMARK 210 1MM BENZAMIDINE, 1X PROTEASE REMARK 210 INHIBITOR COCKTAIL, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HBHA(CO)NH; 3D C(CO)NH; REMARK 210 3D HCCH-TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY ALIPH; 3D 1H-13C REMARK 210 NOESY AROM; 3D HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, AUTOSTRUCTURE 2.1.1, REMARK 210 X-PLOR NIH 2.15.0, SPARKY 3.1 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING, WATER REFINEMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 25 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 85 131.20 77.21 REMARK 500 1 ASN A 87 -159.62 -79.78 REMARK 500 1 LEU A 90 -168.67 58.20 REMARK 500 1 PHE A 97 115.15 64.63 REMARK 500 1 ARG A 104 -13.81 -149.66 REMARK 500 2 ASP A 62 104.93 -162.89 REMARK 500 2 GLN A 71 -91.58 157.94 REMARK 500 2 ARG A 72 102.64 178.16 REMARK 500 2 LYS A 74 -44.96 -145.12 REMARK 500 2 ASP A 88 35.02 -84.78 REMARK 500 2 ILE A 89 151.00 72.89 REMARK 500 2 LEU A 92 -80.58 -104.14 REMARK 500 2 SER A 94 -79.22 -104.80 REMARK 500 2 PHE A 97 -51.59 72.04 REMARK 500 2 ALA A 98 -51.10 73.99 REMARK 500 2 ASP A 103 78.66 59.79 REMARK 500 2 LYS A 107 168.17 70.30 REMARK 500 3 THR A 67 18.87 58.62 REMARK 500 3 GLU A 69 -74.98 -169.13 REMARK 500 3 GLU A 77 -78.66 -97.59 REMARK 500 3 ARG A 78 10.88 -141.21 REMARK 500 3 GLU A 79 80.83 50.84 REMARK 500 3 LEU A 83 -63.10 69.61 REMARK 500 3 PHE A 97 -69.01 -96.38 REMARK 500 3 ALA A 100 137.11 75.26 REMARK 500 3 ASP A 103 43.53 70.17 REMARK 500 3 ARG A 104 165.49 73.57 REMARK 500 3 TRP A 106 36.50 -82.29 REMARK 500 3 LYS A 107 103.19 65.38 REMARK 500 4 ALA A 68 -72.68 -140.33 REMARK 500 4 GLU A 69 105.09 59.41 REMARK 500 4 GLN A 71 98.23 64.23 REMARK 500 4 ASN A 80 40.05 -152.56 REMARK 500 4 PHE A 97 -79.18 67.84 REMARK 500 4 ALA A 98 -176.22 170.36 REMARK 500 5 ALA A 68 107.20 58.15 REMARK 500 5 GLU A 77 -155.85 -130.72 REMARK 500 5 ARG A 78 170.47 74.42 REMARK 500 5 GLU A 79 -10.45 73.37 REMARK 500 5 ARG A 85 93.74 67.01 REMARK 500 5 ILE A 89 81.43 65.73 REMARK 500 5 ALA A 93 33.71 -158.77 REMARK 500 5 SER A 94 -74.78 -53.69 REMARK 500 5 ALA A 100 -156.94 -129.41 REMARK 500 6 THR A 5 97.71 -58.35 REMARK 500 6 ARG A 6 -32.99 -150.41 REMARK 500 6 PHE A 7 176.08 63.93 REMARK 500 6 ASP A 62 -74.99 73.17 REMARK 500 6 LEU A 65 96.21 -66.11 REMARK 500 6 ARG A 70 35.50 -86.33 REMARK 500 REMARK 500 THIS ENTRY HAS 212 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SFR125 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE ARE CONFLICTS BETWEEN SEQRES(LEU A 92) AND SEQUENCE DATABASE REMARK 999 (GLN). THE AUTHORS BELIEVE THAT THE SEQRES IS CORRECT AND IS THE REMARK 999 TRUE IDENTITY OF THESE RESIDUES AND IS NATURAL MUTANT. DBREF 2RN7 A 1 108 UNP Q7UDG6 Q7UDG6_SHIFL 1 108 SEQADV 2RN7 LEU A 92 UNP Q7UDG6 GLN 92 SEE REMARK 999 SEQRES 1 A 108 MET THR LYS ASN THR ARG PHE SER PRO GLU VAL ARG GLN SEQRES 2 A 108 ARG ALA VAL ARG MET VAL LEU GLU SER GLN GLY GLU TYR SEQRES 3 A 108 ASP SER GLN TRP ALA THR ILE CYS SER ILE ALA PRO LYS SEQRES 4 A 108 ILE GLY CYS THR PRO GLU THR LEU ARG VAL TRP VAL ARG SEQRES 5 A 108 GLN HIS GLU ARG ASP THR GLY GLY ASP ASP GLY GLY LEU SEQRES 6 A 108 THR THR ALA GLU ARG GLN ARG LEU LYS GLU PRO GLU ARG SEQRES 7 A 108 GLU ASN ARG GLU LEU ARG ARG SER ASN ASP ILE LEU ARG SEQRES 8 A 108 LEU ALA SER ALA TYR PHE ALA LYS ALA GLU PHE ASP ARG SEQRES 9 A 108 LEU TRP LYS LYS HELIX 1 1 SER A 8 TYR A 26 1 19 HELIX 2 2 SER A 28 GLY A 41 1 14 HELIX 3 3 THR A 43 ARG A 56 1 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1