HEADER TRANSFERASE 08-DEC-07 2RN8 TITLE NMR STRUCTURE NOTE: MURINE ITK SH3 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE ITK/TSK; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 SYNONYM: T-CELL-SPECIFIC KINASE, IL-2-INDUCIBLE T-CELL KINASE, KINASE COMPND 6 EMT, KINASE TLK; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ITK, EMT, TLK, TSK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX2T KEYWDS ITK, SH3, BETA BARREL, 310 HELIX, REGULATORY, ATP-BINDING, KINASE, KEYWDS 2 MEMBRANE, METAL-BINDING, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, SH2 KEYWDS 3 DOMAIN, SH3 DOMAIN, TRANSFERASE, TYROSINE-PROTEIN KINASE, ZINC, KEYWDS 4 ZINC-FINGER EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.J.SEVERIN REVDAT 4 14-JUN-23 2RN8 1 REMARK REVDAT 3 26-FEB-20 2RN8 1 REMARK SEQADV REVDAT 2 24-FEB-09 2RN8 1 VERSN REVDAT 1 25-DEC-07 2RN8 0 JRNL AUTH A.J.SEVERIN,D.B.FULTON,A.H.ANDREOTTI JRNL TITL NMR STRUCTURE NOTE: MURINE ITK SH3 DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: XPLOR-NIH REFINE.PY SCRIPT REMARK 4 REMARK 4 2RN8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000150056. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 75 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 3.4MM [U-100% 13C; U-100% 15N] REMARK 210 ITK SH3, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N 1H HSQC, CBCA(CO)CH, HNCACB, REMARK 210 HBHA(CO)NH, HBHANH, HNCO, (HB) REMARK 210 CB(CGCDCE)HE, (HB)CB(CGCD)HD, REMARK 210 HCCH-TOCSY, 3D 15N-EDITED TOCSY, REMARK 210 2D HOMONUCLEAR TOCSY, 2D REMARK 210 HOMONUCLEAR NOESY, 3D 13C-EDITED REMARK 210 ALIPHATIC NOESY, 3D 13C-EDITED REMARK 210 AROMATIC NOESY, 15N-EDITED NOESY, REMARK 210 15N-EDITED TOCSY, IPAP 1H-15N, REMARK 210 J CORRELATION HNHA, LONG RANGE REMARK 210 COUPLING HNCO HYDROGEN BOND REMARK 210 EXPERIMENT REMARK 210 SPECTROMETER FIELD STRENGTH : 700.133 MHZ REMARK 210 SPECTROMETER MODEL : AVII REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 210 HH TYR A 220 1.35 REMARK 500 O THR A 174 H LEU A 200 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 170 59.41 -168.58 REMARK 500 1 ASP A 186 154.92 170.91 REMARK 500 1 PRO A 187 -15.84 -40.55 REMARK 500 1 ASP A 195 -24.51 83.20 REMARK 500 1 LEU A 201 -66.25 -105.01 REMARK 500 1 GLU A 205 -169.43 -52.86 REMARK 500 1 ILE A 206 -30.35 -151.51 REMARK 500 1 SER A 230 162.42 56.82 REMARK 500 2 SER A 170 62.09 179.44 REMARK 500 2 ASN A 185 65.07 -111.08 REMARK 500 2 ASP A 195 -22.43 81.06 REMARK 500 2 LEU A 201 -64.32 -106.57 REMARK 500 2 GLU A 205 105.02 58.53 REMARK 500 2 ILE A 206 -32.02 -156.84 REMARK 500 2 HIS A 207 -55.02 -151.11 REMARK 500 2 SER A 230 162.91 60.17 REMARK 500 3 SER A 170 62.37 -160.53 REMARK 500 3 ASN A 185 63.19 -113.37 REMARK 500 3 ASP A 195 -18.92 82.15 REMARK 500 3 LEU A 201 -67.99 -105.92 REMARK 500 3 GLU A 205 92.46 -56.07 REMARK 500 3 SER A 230 73.40 40.46 REMARK 500 4 SER A 170 163.88 56.38 REMARK 500 4 PRO A 171 -167.23 -73.67 REMARK 500 4 ASP A 186 159.03 178.15 REMARK 500 4 PRO A 187 -8.45 -54.34 REMARK 500 4 CYS A 194 146.17 -27.45 REMARK 500 4 ASP A 195 -30.41 93.59 REMARK 500 4 LEU A 201 -65.36 -104.37 REMARK 500 4 SER A 204 94.40 178.41 REMARK 500 4 GLU A 205 11.14 -58.90 REMARK 500 4 HIS A 207 -74.40 -129.90 REMARK 500 4 SER A 230 76.65 39.22 REMARK 500 5 PRO A 171 45.27 -77.83 REMARK 500 5 GLU A 172 -47.49 67.61 REMARK 500 5 ASP A 186 154.94 170.37 REMARK 500 5 PRO A 187 -16.71 -40.30 REMARK 500 5 ASP A 195 -22.80 85.15 REMARK 500 5 LEU A 201 -67.05 -106.56 REMARK 500 5 SER A 203 33.74 -87.73 REMARK 500 5 GLU A 205 -11.20 67.58 REMARK 500 5 SER A 230 161.66 58.83 REMARK 500 6 SER A 170 63.73 -165.21 REMARK 500 6 PRO A 171 -167.54 -76.78 REMARK 500 6 ASN A 185 71.16 -107.54 REMARK 500 6 LEU A 190 -114.74 -101.40 REMARK 500 6 ALA A 191 101.25 -177.98 REMARK 500 6 ASP A 195 -24.73 85.17 REMARK 500 6 GLU A 205 89.33 -52.85 REMARK 500 6 SER A 230 72.59 40.84 REMARK 500 REMARK 500 THIS ENTRY HAS 184 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11018 RELATED DB: BMRB REMARK 900 RELATED ID: 2RNA RELATED DB: PDB REMARK 900 MINIMIZED AVERAGE STRUCTURE DBREF 2RN8 A 171 232 UNP Q03526 ITK_MOUSE 177 238 SEQADV 2RN8 GLY A 169 UNP Q03526 EXPRESSION TAG SEQADV 2RN8 SER A 170 UNP Q03526 EXPRESSION TAG SEQRES 1 A 64 GLY SER PRO GLU GLU THR LEU VAL ILE ALA LEU TYR ASP SEQRES 2 A 64 TYR GLN THR ASN ASP PRO GLN GLU LEU ALA LEU ARG CYS SEQRES 3 A 64 ASP GLU GLU TYR TYR LEU LEU ASP SER SER GLU ILE HIS SEQRES 4 A 64 TRP TRP ARG VAL GLN ASP LYS ASN GLY HIS GLU GLY TYR SEQRES 5 A 64 ALA PRO SER SER TYR LEU VAL GLU LYS SER PRO ASN HELIX 1 1 PRO A 222 SER A 224 5 3 SHEET 1 A 5 GLU A 218 ALA A 221 0 SHEET 2 A 5 TRP A 209 GLN A 212 -1 N TRP A 209 O ALA A 221 SHEET 3 A 5 GLU A 197 LEU A 200 -1 N TYR A 199 O GLN A 212 SHEET 4 A 5 LEU A 175 ALA A 178 -1 N VAL A 176 O TYR A 198 SHEET 5 A 5 LEU A 226 GLU A 228 -1 O VAL A 227 N ILE A 177 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1