HEADER LIGASE 30-JAN-08 2RNO TITLE SOLUTION STRUCTURE OF THE N-TERMINAL SAP DOMAIN OF SUMO E3 LIGASES TITLE 2 FROM ORYZA SATIVA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE DNA-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES (UNP 2-105); COMPND 5 SYNONYM: SIZ1, OS05G0125000 PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA SUBSP. JAPONICA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 GENE: OSJNBB0079L11.3, OS05G0125000; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET-28B(+) KEYWDS SUMO LIGASE, DNA BINDING, SUMOYLATION, DNA-BINDING, METAL-BINDING, KEYWDS 2 ZINC-FINGER, LIGASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.SUZUKI,H.SHINDO,A.TASE,T.YAMAZAKI REVDAT 4 01-MAY-24 2RNO 1 REMARK REVDAT 3 26-FEB-20 2RNO 1 REMARK SEQADV REVDAT 2 07-JUL-10 2RNO 1 JRNL AUTHOR REVDAT 1 30-DEC-08 2RNO 0 JRNL AUTH R.SUZUKI,H.SHINDO,A.TASE,Y.KIKUCHI,M.SHIMIZU,T.YAMAZAKI JRNL TITL SOLUTION STRUCTURES AND DNA BINDING PROPERTIES OF THE JRNL TITL 2 N-TERMINAL SAP DOMAINS OF SUMO E3 LIGASES FROM SACCHAROMYCES JRNL TITL 3 CEREVISIAE AND ORYZA SATIVA. JRNL REF PROTEINS V. 75 336 2009 JRNL REFN ISSN 0887-3585 JRNL PMID 18831036 JRNL DOI 10.1002/PROT.22243 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.1, CYANA 2.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), GUNTERT, MUMENTHALER, REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RNO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000150071. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : 6.1 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-13C; U-15N] SIZ1, 20 REMARK 210 MM POTASSIUM PHOSPHATE, 300 MM REMARK 210 SODIUM CHLORIDE, 2 MM DTT, 92% REMARK 210 H2O/8% D2O; 0.7 MM [U-13C; U-15N] REMARK 210 SIZ1, 20 MM POTASSIUM PHOSPHATE, REMARK 210 300 MM SODIUM CHLORIDE, 2 MM REMARK 210 DTT, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D HNCO; 3D HNCA; 3D CBCA(CO)NH; REMARK 210 3D 13C-EDITED 1H-15N NOESY; 2D REMARK 210 1H-13C HSQC; 3D HCCH-TOCSY; 4D REMARK 210 1H-13C NOESY; 3D HCABGCO REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE RELEASED AT FEB 10, REMARK 210 2006, TALOS 2003.027.13.05, REMARK 210 SPARKY 3.113, PIPP 4.3.6, CYANA REMARK 210 2.1, AQUA 3.2, PROCHECKNMR 3.5.4 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 16 173.36 -52.29 REMARK 500 1 LYS A 34 174.38 -58.41 REMARK 500 1 HIS A 54 56.95 -146.55 REMARK 500 1 TRP A 57 -75.61 -115.70 REMARK 500 1 LYS A 60 25.63 -157.86 REMARK 500 1 GLN A 80 13.66 -149.11 REMARK 500 1 ILE A 81 -70.00 69.23 REMARK 500 1 GLN A 82 -174.67 53.43 REMARK 500 1 CYS A 83 48.50 -100.52 REMARK 500 1 ALA A 84 136.10 66.52 REMARK 500 1 ALA A 88 -34.02 -179.47 REMARK 500 1 SER A 91 56.58 -99.33 REMARK 500 1 HIS A 92 -75.16 -148.65 REMARK 500 1 SER A 95 14.83 -150.97 REMARK 500 1 PRO A 101 -171.69 -69.74 REMARK 500 2 SER A -4 -73.26 -65.57 REMARK 500 2 HIS A -3 45.99 -151.63 REMARK 500 2 ARG A 16 173.78 -52.88 REMARK 500 2 LEU A 29 67.26 -114.81 REMARK 500 2 PRO A 30 -160.52 -69.75 REMARK 500 2 LYS A 31 -57.01 77.40 REMARK 500 2 GLN A 32 -169.67 -162.79 REMARK 500 2 THR A 47 -63.55 -108.86 REMARK 500 2 GLN A 52 37.60 -94.82 REMARK 500 2 ARG A 53 -38.35 -139.81 REMARK 500 2 HIS A 54 56.33 -174.64 REMARK 500 2 LYS A 60 65.72 175.64 REMARK 500 2 LEU A 63 20.47 -151.52 REMARK 500 2 GLN A 82 -169.48 -73.04 REMARK 500 2 ALA A 84 127.19 66.56 REMARK 500 2 SER A 91 43.84 -92.45 REMARK 500 2 SER A 93 64.06 -178.94 REMARK 500 2 PHE A 99 54.89 -98.81 REMARK 500 2 PRO A 101 -171.27 -69.73 REMARK 500 2 ILE A 102 32.60 -142.32 REMARK 500 2 GLU A 104 84.79 -68.98 REMARK 500 3 SER A -4 -59.24 -176.34 REMARK 500 3 MET A -2 -77.96 -131.80 REMARK 500 3 ARG A 16 -167.93 64.25 REMARK 500 3 PRO A 30 77.12 -69.68 REMARK 500 3 LYS A 31 55.51 -177.11 REMARK 500 3 THR A 47 -70.49 -108.25 REMARK 500 3 TRP A 57 -72.02 -114.81 REMARK 500 3 ARG A 59 33.48 -94.81 REMARK 500 3 ASN A 61 51.26 32.85 REMARK 500 3 SER A 62 45.99 -77.72 REMARK 500 3 LEU A 63 17.23 -151.55 REMARK 500 3 GLN A 80 24.11 -169.24 REMARK 500 3 CYS A 83 -78.13 68.16 REMARK 500 3 ASP A 86 74.35 64.19 REMARK 500 REMARK 500 THIS ENTRY HAS 404 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1V66 RELATED DB: PDB REMARK 900 ENTRY CONTAINS THE 3D-STRUCTURE OF HUMAN HOMOLOGUE OF THIS PROTEIN. REMARK 900 RELATED ID: 2RNN RELATED DB: PDB REMARK 900 RELATED ID: 11030 RELATED DB: BMRB DBREF 2RNO A 2 105 UNP Q6L4L4 Q6L4L4_ORYSJ 2 105 SEQADV 2RNO GLY A -5 UNP Q6L4L4 EXPRESSION TAG SEQADV 2RNO SER A -4 UNP Q6L4L4 EXPRESSION TAG SEQADV 2RNO HIS A -3 UNP Q6L4L4 EXPRESSION TAG SEQADV 2RNO MET A -2 UNP Q6L4L4 EXPRESSION TAG SEQADV 2RNO ALA A -1 UNP Q6L4L4 EXPRESSION TAG SEQADV 2RNO SER A 1 UNP Q6L4L4 EXPRESSION TAG SEQRES 1 A 110 GLY SER HIS MET ALA SER ALA ASP LEU VAL SER SER CYS SEQRES 2 A 110 LYS ASP LYS LEU ALA TYR PHE ARG ILE LYS GLU LEU LYS SEQRES 3 A 110 ASP ILE LEU ASN GLN LEU GLY LEU PRO LYS GLN GLY LYS SEQRES 4 A 110 LYS GLN ASP LEU ILE ASP ARG VAL LEU ALA LEU LEU THR SEQRES 5 A 110 ASP GLU GLN GLY GLN ARG HIS HIS GLY TRP GLY ARG LYS SEQRES 6 A 110 ASN SER LEU THR LYS GLU ALA VAL ALA LYS ILE VAL ASP SEQRES 7 A 110 ASP THR TYR ARG LYS MET GLN ILE GLN CYS ALA PRO ASP SEQRES 8 A 110 LEU ALA THR ARG SER HIS SER GLY SER ASP PHE SER PHE SEQRES 9 A 110 ARG PRO ILE GLU GLU ALA HELIX 1 1 ALA A -1 PHE A 15 1 16 HELIX 2 2 ARG A 16 GLY A 28 1 13 HELIX 3 3 LYS A 34 ASP A 48 1 15 HELIX 4 4 LYS A 60 LEU A 63 5 4 HELIX 5 5 THR A 64 ILE A 81 1 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1