HEADER    LIGASE                                  30-JAN-08   2RNO              
TITLE     SOLUTION STRUCTURE OF THE N-TERMINAL SAP DOMAIN OF SUMO E3 LIGASES    
TITLE    2 FROM ORYZA SATIVA                                                    
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PUTATIVE DNA-BINDING PROTEIN;                              
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: RESIDUES (UNP 2-105);                                      
COMPND   5 SYNONYM: SIZ1, OS05G0125000 PROTEIN;                                 
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: ORYZA SATIVA SUBSP. JAPONICA;                   
SOURCE   3 ORGANISM_COMMON: RICE;                                               
SOURCE   4 ORGANISM_TAXID: 39947;                                               
SOURCE   5 GENE: OSJNBB0079L11.3, OS05G0125000;                                 
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR;                               
SOURCE  10 EXPRESSION_SYSTEM_VECTOR: PET-28B(+)                                 
KEYWDS    SUMO LIGASE, DNA BINDING, SUMOYLATION, DNA-BINDING, METAL-BINDING,    
KEYWDS   2 ZINC-FINGER, LIGASE                                                  
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    R.SUZUKI,H.SHINDO,A.TASE,T.YAMAZAKI                                   
REVDAT   4   01-MAY-24 2RNO    1       REMARK                                   
REVDAT   3   26-FEB-20 2RNO    1       REMARK SEQADV                            
REVDAT   2   07-JUL-10 2RNO    1       JRNL   AUTHOR                            
REVDAT   1   30-DEC-08 2RNO    0                                                
JRNL        AUTH   R.SUZUKI,H.SHINDO,A.TASE,Y.KIKUCHI,M.SHIMIZU,T.YAMAZAKI      
JRNL        TITL   SOLUTION STRUCTURES AND DNA BINDING PROPERTIES OF THE        
JRNL        TITL 2 N-TERMINAL SAP DOMAINS OF SUMO E3 LIGASES FROM SACCHAROMYCES 
JRNL        TITL 3 CEREVISIAE AND ORYZA SATIVA.                                 
JRNL        REF    PROTEINS                      V.  75   336 2009              
JRNL        REFN                   ISSN 0887-3585                               
JRNL        PMID   18831036                                                     
JRNL        DOI    10.1002/PROT.22243                                           
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : XWINNMR 3.1, CYANA 2.1                               
REMARK   3   AUTHORS     : BRUKER BIOSPIN (XWINNMR), GUNTERT, MUMENTHALER,      
REMARK   3                 WUTHRICH (CYANA)                                     
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2RNO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-FEB-08.                  
REMARK 100 THE DEPOSITION ID IS D_1000150071.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 283                                
REMARK 210  PH                             : 6.1                                
REMARK 210  IONIC STRENGTH                 : NULL                               
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 0.7 MM [U-13C; U-15N] SIZ1, 20     
REMARK 210                                   MM POTASSIUM PHOSPHATE, 300 MM     
REMARK 210                                   SODIUM CHLORIDE, 2 MM DTT, 92%     
REMARK 210                                   H2O/8% D2O; 0.7 MM [U-13C; U-15N]  
REMARK 210                                   SIZ1, 20 MM POTASSIUM PHOSPHATE,   
REMARK 210                                   300 MM SODIUM CHLORIDE, 2 MM       
REMARK 210                                   DTT, 100% D2O                      
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D 1H-15N HSQC; 3D 1H-15N NOESY;   
REMARK 210                                   3D HNCO; 3D HNCA; 3D CBCA(CO)NH;   
REMARK 210                                   3D 13C-EDITED 1H-15N NOESY; 2D     
REMARK 210                                   1H-13C HSQC; 3D HCCH-TOCSY; 4D     
REMARK 210                                   1H-13C NOESY; 3D HCABGCO           
REMARK 210  SPECTROMETER FIELD STRENGTH    : 750 MHZ                            
REMARK 210  SPECTROMETER MODEL             : DMX                                
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE RELEASED AT FEB 10,        
REMARK 210                                   2006, TALOS 2003.027.13.05,        
REMARK 210                                   SPARKY 3.113, PIPP 4.3.6, CYANA    
REMARK 210                                   2.1, AQUA 3.2, PROCHECKNMR 3.5.4   
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS             
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LEAST          
REMARK 210                                   RESTRAINT VIOLATIONS               
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 ARG A  16      173.36    -52.29                                   
REMARK 500  1 LYS A  34      174.38    -58.41                                   
REMARK 500  1 HIS A  54       56.95   -146.55                                   
REMARK 500  1 TRP A  57      -75.61   -115.70                                   
REMARK 500  1 LYS A  60       25.63   -157.86                                   
REMARK 500  1 GLN A  80       13.66   -149.11                                   
REMARK 500  1 ILE A  81      -70.00     69.23                                   
REMARK 500  1 GLN A  82     -174.67     53.43                                   
REMARK 500  1 CYS A  83       48.50   -100.52                                   
REMARK 500  1 ALA A  84      136.10     66.52                                   
REMARK 500  1 ALA A  88      -34.02   -179.47                                   
REMARK 500  1 SER A  91       56.58    -99.33                                   
REMARK 500  1 HIS A  92      -75.16   -148.65                                   
REMARK 500  1 SER A  95       14.83   -150.97                                   
REMARK 500  1 PRO A 101     -171.69    -69.74                                   
REMARK 500  2 SER A  -4      -73.26    -65.57                                   
REMARK 500  2 HIS A  -3       45.99   -151.63                                   
REMARK 500  2 ARG A  16      173.78    -52.88                                   
REMARK 500  2 LEU A  29       67.26   -114.81                                   
REMARK 500  2 PRO A  30     -160.52    -69.75                                   
REMARK 500  2 LYS A  31      -57.01     77.40                                   
REMARK 500  2 GLN A  32     -169.67   -162.79                                   
REMARK 500  2 THR A  47      -63.55   -108.86                                   
REMARK 500  2 GLN A  52       37.60    -94.82                                   
REMARK 500  2 ARG A  53      -38.35   -139.81                                   
REMARK 500  2 HIS A  54       56.33   -174.64                                   
REMARK 500  2 LYS A  60       65.72    175.64                                   
REMARK 500  2 LEU A  63       20.47   -151.52                                   
REMARK 500  2 GLN A  82     -169.48    -73.04                                   
REMARK 500  2 ALA A  84      127.19     66.56                                   
REMARK 500  2 SER A  91       43.84    -92.45                                   
REMARK 500  2 SER A  93       64.06   -178.94                                   
REMARK 500  2 PHE A  99       54.89    -98.81                                   
REMARK 500  2 PRO A 101     -171.27    -69.73                                   
REMARK 500  2 ILE A 102       32.60   -142.32                                   
REMARK 500  2 GLU A 104       84.79    -68.98                                   
REMARK 500  3 SER A  -4      -59.24   -176.34                                   
REMARK 500  3 MET A  -2      -77.96   -131.80                                   
REMARK 500  3 ARG A  16     -167.93     64.25                                   
REMARK 500  3 PRO A  30       77.12    -69.68                                   
REMARK 500  3 LYS A  31       55.51   -177.11                                   
REMARK 500  3 THR A  47      -70.49   -108.25                                   
REMARK 500  3 TRP A  57      -72.02   -114.81                                   
REMARK 500  3 ARG A  59       33.48    -94.81                                   
REMARK 500  3 ASN A  61       51.26     32.85                                   
REMARK 500  3 SER A  62       45.99    -77.72                                   
REMARK 500  3 LEU A  63       17.23   -151.55                                   
REMARK 500  3 GLN A  80       24.11   -169.24                                   
REMARK 500  3 CYS A  83      -78.13     68.16                                   
REMARK 500  3 ASP A  86       74.35     64.19                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     404 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1V66   RELATED DB: PDB                                   
REMARK 900 ENTRY CONTAINS THE 3D-STRUCTURE OF HUMAN HOMOLOGUE OF THIS PROTEIN.  
REMARK 900 RELATED ID: 2RNN   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 11030   RELATED DB: BMRB                                 
DBREF  2RNO A    2   105  UNP    Q6L4L4   Q6L4L4_ORYSJ     2    105             
SEQADV 2RNO GLY A   -5  UNP  Q6L4L4              EXPRESSION TAG                 
SEQADV 2RNO SER A   -4  UNP  Q6L4L4              EXPRESSION TAG                 
SEQADV 2RNO HIS A   -3  UNP  Q6L4L4              EXPRESSION TAG                 
SEQADV 2RNO MET A   -2  UNP  Q6L4L4              EXPRESSION TAG                 
SEQADV 2RNO ALA A   -1  UNP  Q6L4L4              EXPRESSION TAG                 
SEQADV 2RNO SER A    1  UNP  Q6L4L4              EXPRESSION TAG                 
SEQRES   1 A  110  GLY SER HIS MET ALA SER ALA ASP LEU VAL SER SER CYS          
SEQRES   2 A  110  LYS ASP LYS LEU ALA TYR PHE ARG ILE LYS GLU LEU LYS          
SEQRES   3 A  110  ASP ILE LEU ASN GLN LEU GLY LEU PRO LYS GLN GLY LYS          
SEQRES   4 A  110  LYS GLN ASP LEU ILE ASP ARG VAL LEU ALA LEU LEU THR          
SEQRES   5 A  110  ASP GLU GLN GLY GLN ARG HIS HIS GLY TRP GLY ARG LYS          
SEQRES   6 A  110  ASN SER LEU THR LYS GLU ALA VAL ALA LYS ILE VAL ASP          
SEQRES   7 A  110  ASP THR TYR ARG LYS MET GLN ILE GLN CYS ALA PRO ASP          
SEQRES   8 A  110  LEU ALA THR ARG SER HIS SER GLY SER ASP PHE SER PHE          
SEQRES   9 A  110  ARG PRO ILE GLU GLU ALA                                      
HELIX    1   1 ALA A   -1  PHE A   15  1                                  16    
HELIX    2   2 ARG A   16  GLY A   28  1                                  13    
HELIX    3   3 LYS A   34  ASP A   48  1                                  15    
HELIX    4   4 LYS A   60  LEU A   63  5                                   4    
HELIX    5   5 THR A   64  ILE A   81  1                                  18    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1