HEADER TRANSCRIPTION 31-JAN-08 2RNR TITLE SOLUTION STRUCTURE OF THE COMPLEX BETWEEN TFIIE ALPHA C-TERMINAL TITLE 2 ACIDIC DOMAIN AND TFIIH P62 PH DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL ACIDIC DOMAIN, UNP RESIDUES 378-439; COMPND 5 SYNONYM: TFIIE-ALPHA, GENERAL TRANSCRIPTION FACTOR IIE SUBUNIT 1, COMPND 6 GENERAL TRANSCRIPTION FACTOR IIE 56 KDA SUBUNIT; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TFIIH BASAL TRANSCRIPTION FACTOR COMPLEX P62 SUBUNIT; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: PH DOMAIN, UNP RESIDUES 1-108; COMPND 12 SYNONYM: BASIC TRANSCRIPTION FACTOR 2 62 KDA SUBUNIT, BTF2-P62, COMPND 13 GENERAL TRANSCRIPTION FACTOR IIH POLYPEPTIDE 1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET3A; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PGEX4T-1 KEYWDS GENERAL TRANSCRIPTION FACTOR, HUMAN TFIIE ALPHA, HUMAN TFIIH P62, KEYWDS 2 ACIDIC DOMAIN, PH DOMAIN, DNA DAMAGE, DNA REPAIR, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.OKUDA,Y.NISHIMURA REVDAT 4 16-MAR-22 2RNR 1 REMARK SEQADV REVDAT 3 24-FEB-09 2RNR 1 VERSN REVDAT 2 22-APR-08 2RNR 1 JRNL REVDAT 1 01-APR-08 2RNR 0 JRNL AUTH M.OKUDA,A.TANAKA,M.SATOH,S.MIZUTA,M.TAKAZAWA,Y.OHKUMA, JRNL AUTH 2 Y.NISHIMURA JRNL TITL STRUCTURAL INSIGHT INTO THE TFIIE-TFIIH INTERACTION: TFIIE JRNL TITL 2 AND P53 SHARE THE BINDING REGION ON TFIIH JRNL REF EMBO J. V. 27 1161 2008 JRNL REFN ISSN 0261-4189 JRNL PMID 18354501 JRNL DOI 10.1038/EMBOJ.2008.47 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, X-PLOR NIH REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT WITH WATER REMARK 4 REMARK 4 2RNR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000150073. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 305 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM [U-100% 15N] TFIIE-ALPHA, REMARK 210 0.5MM TFIIH P62; 20MM POTASSIUM REMARK 210 PHOSPHATE, 5MM [U-99% 2H] DTT, REMARK 210 90% H2O/10% D2O; 0.5MM [U-100% REMARK 210 13C; U-100% 15N] TFIIE-ALPHA, REMARK 210 0.5MM TFIIH P62; 20MM POTASSIUM REMARK 210 PHOSPHATE, 5MM [U-99% 2H] DTT, REMARK 210 90% H2O/10% D2O; 0.5MM [U-100% REMARK 210 13C; U-100% 15N] TFIIE-ALPHA, REMARK 210 0.5MM TFIIH P62; 20MM POTASSIUM REMARK 210 PHOSPHATE, 5MM [U-99% 2H] DTT, REMARK 210 100% D2O; 0.5MM [U-100% 15N] REMARK 210 TFIIH P62, 0.5MM TFIIE-ALPHA; REMARK 210 20MM POTASSIUM PHOSPHATE, 5MM [U- REMARK 210 99% 2H] DTT, 90% H2O/10% D2O; REMARK 210 0.5MM [U-100% 13C; U-100% 15N] REMARK 210 TFIIH P62, 0.5MM TFIIE-ALPHA; REMARK 210 20MM POTASSIUM PHOSPHATE, 5MM [U- REMARK 210 99% 2H] DTT, 90% H2O/10% D2O; REMARK 210 0.5MM [U-100% 13C; U-100% 15N] REMARK 210 TFIIH P62, 0.5MM TFIIE-ALPHA; REMARK 210 20MM POTASSIUM PHOSPHATE, 5MM [U- REMARK 210 99% 2H] DTT, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HN(CO)CA; 3D HNCO; 3D HBHA(CO)NH; REMARK 210 3D C(CO)NH; 3D H(CCO)NH; 3D REMARK 210 HNHB; 3D HNHA; 2D 1H-13C HSQC; REMARK 210 3D HCCH-TOCSY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRDRAW, NMRVIEW, X-PLOR NIH, REMARK 210 MOLMOL, PROCHECKNMR REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING, SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 376 REMARK 465 SER A 377 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 439 HZ3 LYS B 106 1.56 REMARK 500 OE2 GLU A 378 HZ3 LYS B 18 1.57 REMARK 500 HZ2 LYS B 51 O ASN B 108 1.58 REMARK 500 HZ2 LYS A 423 OE1 GLU A 424 1.58 REMARK 500 O ASN B 81 H ALA B 85 1.58 REMARK 500 HZ2 LYS B 14 OE1 GLU B 82 1.60 REMARK 500 OE1 GLU A 382 HZ1 LYS B 62 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 384 65.22 66.22 REMARK 500 1 GLU A 386 83.82 -168.98 REMARK 500 1 ASP A 392 96.11 -56.67 REMARK 500 1 LEU A 437 -118.63 -116.49 REMARK 500 1 SER B 5 78.47 60.83 REMARK 500 1 GLU B 36 -102.52 22.91 REMARK 500 1 PRO B 57 -159.14 -71.60 REMARK 500 1 ALA B 85 -69.28 -28.78 REMARK 500 1 LYS B 106 94.78 -61.14 REMARK 500 2 GLU A 379 -156.70 -108.33 REMARK 500 2 GLU A 383 -169.82 64.63 REMARK 500 2 ASP A 384 66.09 -174.02 REMARK 500 2 GLU A 386 50.39 -148.37 REMARK 500 2 ASP A 392 68.40 -68.91 REMARK 500 2 ALA B 2 -38.90 -130.53 REMARK 500 2 SER B 5 24.89 -152.63 REMARK 500 2 GLU B 36 -92.05 62.00 REMARK 500 2 GLU B 82 54.80 -68.19 REMARK 500 2 SER B 83 -43.69 -167.95 REMARK 500 2 ALA B 85 -71.14 -28.92 REMARK 500 2 PRO B 101 -8.73 -58.95 REMARK 500 2 LYS B 104 106.78 -51.85 REMARK 500 2 ARG B 105 123.68 168.31 REMARK 500 2 LYS B 106 -140.69 -94.67 REMARK 500 3 ASP A 380 103.42 60.80 REMARK 500 3 GLU A 386 92.85 -165.39 REMARK 500 3 ASP A 392 67.38 -69.39 REMARK 500 3 SER B 4 39.90 -154.34 REMARK 500 3 GLU B 7 86.62 -63.46 REMARK 500 3 PRO B 35 -151.48 -82.21 REMARK 500 3 GLU B 36 -59.15 -26.07 REMARK 500 3 PRO B 57 -163.86 -68.57 REMARK 500 3 GLU B 82 -53.45 -15.48 REMARK 500 3 ARG B 105 31.56 178.35 REMARK 500 4 GLU A 383 -152.75 -102.50 REMARK 500 4 ASP A 384 63.42 159.89 REMARK 500 4 GLU A 386 63.91 -153.41 REMARK 500 4 ASP A 392 71.69 -69.34 REMARK 500 4 LYS B 18 48.03 80.05 REMARK 500 4 GLU B 58 81.16 21.44 REMARK 500 4 GLU B 82 -49.69 -21.44 REMARK 500 4 ARG B 105 103.90 -177.93 REMARK 500 4 ALA B 107 49.85 -85.75 REMARK 500 5 GLU A 379 -79.66 -70.58 REMARK 500 5 ASP A 380 102.42 178.00 REMARK 500 5 GLU A 386 82.08 -175.12 REMARK 500 5 ASP A 392 84.87 -60.52 REMARK 500 5 LEU A 437 -111.77 -89.51 REMARK 500 5 SER B 4 77.43 -159.13 REMARK 500 5 SER B 5 -58.15 -122.23 REMARK 500 REMARK 500 THIS ENTRY HAS 260 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1VD4 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE ZINC FINGER DOMAIN OF TFIIE ALPHA REMARK 900 RELATED ID: 1D8J RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BETA NMR 20 REMARK 900 STRUCTURES REMARK 900 RELATED ID: 1D8K RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BETA NMR REMARK 900 MINIMIZED AVERAGE STRUCTURE REMARK 900 RELATED ID: 2RNQ RELATED DB: PDB DBREF 2RNR A 378 439 UNP P29083 T2EA_HUMAN 378 439 DBREF 2RNR B 1 108 UNP P32780 TF2H1_HUMAN 1 108 SEQADV 2RNR GLY A 376 UNP P29083 EXPRESSION TAG SEQADV 2RNR SER A 377 UNP P29083 EXPRESSION TAG SEQADV 2RNR GLY B -1 UNP P32780 EXPRESSION TAG SEQADV 2RNR SER B 0 UNP P32780 EXPRESSION TAG SEQRES 1 A 64 GLY SER GLU GLU ASP GLU GLU GLU ASP ASP GLU PHE GLU SEQRES 2 A 64 GLU VAL ALA ASP ASP PRO ILE VAL MET VAL ALA GLY ARG SEQRES 3 A 64 PRO PHE SER TYR SER GLU VAL SER GLN ARG PRO GLU LEU SEQRES 4 A 64 VAL ALA GLN MET THR PRO GLU GLU LYS GLU ALA TYR ILE SEQRES 5 A 64 ALA MET GLY GLN ARG MET PHE GLU ASP LEU PHE GLU SEQRES 1 B 110 GLY SER MET ALA THR SER SER GLU GLU VAL LEU LEU ILE SEQRES 2 B 110 VAL LYS LYS VAL ARG GLN LYS LYS GLN ASP GLY ALA LEU SEQRES 3 B 110 TYR LEU MET ALA GLU ARG ILE ALA TRP ALA PRO GLU GLY SEQRES 4 B 110 LYS ASP ARG PHE THR ILE SER HIS MET TYR ALA ASP ILE SEQRES 5 B 110 LYS CYS GLN LYS ILE SER PRO GLU GLY LYS ALA LYS ILE SEQRES 6 B 110 GLN LEU GLN LEU VAL LEU HIS ALA GLY ASP THR THR ASN SEQRES 7 B 110 PHE HIS PHE SER ASN GLU SER THR ALA VAL LYS GLU ARG SEQRES 8 B 110 ASP ALA VAL LYS ASP LEU LEU GLN GLN LEU LEU PRO LYS SEQRES 9 B 110 PHE LYS ARG LYS ALA ASN HELIX 1 1 TYR A 405 ARG A 411 1 7 HELIX 2 2 ARG A 411 MET A 418 1 8 HELIX 3 3 THR A 419 GLU A 435 1 17 HELIX 4 4 THR B 84 LYS B 104 1 21 SHEET 1 A 8 GLU A 388 VAL A 390 0 SHEET 2 A 8 ILE B 50 ILE B 55 -1 O ILE B 55 N GLU A 388 SHEET 3 A 8 ILE B 63 LEU B 69 -1 O GLN B 66 N LYS B 54 SHEET 4 A 8 THR B 74 PHE B 79 -1 O PHE B 77 N LEU B 65 SHEET 5 A 8 LEU B 10 GLN B 17 -1 N ARG B 16 O HIS B 78 SHEET 6 A 8 ASP B 21 LEU B 26 -1 O LEU B 24 N VAL B 12 SHEET 7 A 8 ARG B 30 PRO B 35 -1 O ALA B 34 N ALA B 23 SHEET 8 A 8 ILE B 43 MET B 46 -1 O HIS B 45 N ILE B 31 SHEET 1 B 2 ILE A 395 VAL A 398 0 SHEET 2 B 2 ARG A 401 SER A 404 -1 O ARG A 401 N VAL A 398 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1