HEADER TRANSCRIPTION 08-MAR-08 2RO5 TITLE RDC-REFINED SOLUTION STRUCTURE OF THE N-TERMINAL DNA RECOGNITION TITLE 2 DOMAIN OF THE BACILLUS SUBTILIS TRANSITION-STATE REGULATOR SPOVT COMPND MOL_ID: 1; COMPND 2 MOLECULE: STAGE V SPORULATION PROTEIN T; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DNA RECOGNITION DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: SPOVT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET21-B KEYWDS TRANSCRIPTION, ACTIVATOR, DNA-BINDING, REPRESSOR, SPORULATION, KEYWDS 2 TRANSCRIPTION REGULATION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR D.M.SULLIVAN,B.G.BOBAY,D.J.KOJETIN,R.J.THOMPSON,M.RANCE,M.A.STRAUCH, AUTHOR 2 J.CAVANAGH REVDAT 5 01-MAY-24 2RO5 1 REMARK REVDAT 4 04-APR-12 2RO5 1 JRNL VERSN REVDAT 3 24-FEB-09 2RO5 1 VERSN REVDAT 2 18-NOV-08 2RO5 1 JRNL REVDAT 1 11-NOV-08 2RO5 0 JRNL AUTH D.M.SULLIVAN,B.G.BOBAY,D.J.KOJETIN,R.J.THOMPSON,M.RANCE, JRNL AUTH 2 M.A.STRAUCH,J.CAVANAGH JRNL TITL INSIGHTS INTO THE NATURE OF DNA BINDING OF ABRB-LIKE JRNL TITL 2 TRANSCRIPTION FACTORS JRNL REF STRUCTURE V. 16 1702 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 19000822 JRNL DOI 10.1016/J.STR.2008.08.014 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2, ARIA 1.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 3294 NOE REMARK 3 -DERIVED DISTANCE CONSTRAINTS, 76 DIHEDRAL ANGLE RESTRAINTS, 54 REMARK 3 HYDROGEN BONDS, AND 36 RESIDUAL DIPOLAR COUPLING RESTRAINTS REMARK 4 REMARK 4 2RO5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000150083. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 305 REMARK 210 PH : 5.8 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 10MM TRIS-HCL, 150MM POTASSIUM REMARK 210 CHLORIDE, 1MM EDTA, 1MM DTT, REMARK 210 0.02% SODIUM AZIDE, 90% H2O/10% REMARK 210 D2O; 10MM TRIS-HCL, 150MM REMARK 210 POTASSIUM CHLORIDE, 1MM EDTA, REMARK 210 1MM DTT, 0.02% SODIUM AZIDE, 10% REMARK 210 H2O/90% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-15N IPAP REMARK 210 HSQC; 3D CBCA(CO)NH; 3D C(CO)NH; REMARK 210 3D HNCO; 3D HNCA; 3D HN(CO)CA; REMARK 210 3D HNCACB; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 1.2, NMRVIEW 5.0, NMRPIPE REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 10 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG23 VAL A 16 HG23 VAL B 16 1.23 REMARK 500 HG21 ILE B 28 H ARG B 29 1.28 REMARK 500 HE2 LYS A 47 HB3 SER A 53 1.31 REMARK 500 OE2 GLU A 35 HZ3 LYS A 47 1.57 REMARK 500 OD1 ASP A 11 H GLY A 14 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 2 -93.25 57.47 REMARK 500 1 ALA A 3 126.43 71.15 REMARK 500 1 ILE A 10 -102.53 -9.97 REMARK 500 1 ASP A 11 -165.03 163.33 REMARK 500 1 LEU A 13 -55.14 -129.96 REMARK 500 1 ILE A 28 -159.68 -113.24 REMARK 500 1 ARG A 29 -159.41 -159.21 REMARK 500 1 GLU A 30 32.73 -70.28 REMARK 500 1 ARG A 40 -90.05 -138.42 REMARK 500 1 ASP A 41 -71.91 -100.76 REMARK 500 1 LYS A 48 -15.03 -44.88 REMARK 500 1 TYR A 49 -55.90 73.59 REMARK 500 1 ILE A 52 -128.72 55.35 REMARK 500 1 GLU A 54 -34.85 174.30 REMARK 500 1 LYS B 2 -94.45 53.63 REMARK 500 1 ALA B 3 127.24 74.02 REMARK 500 1 ILE B 10 -101.27 -10.79 REMARK 500 1 ASP B 11 -169.87 162.20 REMARK 500 1 ILE B 28 -163.28 -121.49 REMARK 500 1 ARG B 29 -158.38 -157.93 REMARK 500 1 GLU B 30 30.84 -69.33 REMARK 500 1 ARG B 40 -78.75 -144.82 REMARK 500 1 ASP B 41 -65.45 -97.63 REMARK 500 1 LYS B 48 -12.88 -43.40 REMARK 500 1 TYR B 49 -55.77 71.87 REMARK 500 1 ILE B 52 -133.33 55.17 REMARK 500 1 GLU B 54 19.76 -160.18 REMARK 500 2 LYS A 2 -140.98 -128.76 REMARK 500 2 ALA A 3 102.64 67.54 REMARK 500 2 ILE A 10 -103.67 -12.23 REMARK 500 2 ASP A 11 -160.27 161.35 REMARK 500 2 LEU A 13 -60.52 -98.42 REMARK 500 2 VAL A 17 98.89 -68.14 REMARK 500 2 ILE A 28 -163.00 -122.18 REMARK 500 2 GLU A 30 36.62 -73.79 REMARK 500 2 ARG A 40 -73.35 -132.13 REMARK 500 2 ASP A 41 -65.11 -129.67 REMARK 500 2 LYS A 48 -16.45 -44.92 REMARK 500 2 TYR A 49 -50.36 74.35 REMARK 500 2 ILE A 52 -141.78 48.91 REMARK 500 2 SER A 53 76.25 -104.63 REMARK 500 2 GLU A 54 110.19 73.02 REMARK 500 2 LYS B 2 -141.62 -97.44 REMARK 500 2 ALA B 3 116.47 72.37 REMARK 500 2 ILE B 10 -107.37 -10.17 REMARK 500 2 ASP B 11 -166.38 163.39 REMARK 500 2 LEU B 13 -61.80 -101.59 REMARK 500 2 VAL B 17 98.92 -67.42 REMARK 500 2 ILE B 28 -162.55 -119.25 REMARK 500 2 GLU B 30 34.06 -72.40 REMARK 500 REMARK 500 THIS ENTRY HAS 272 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Z0R RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE N-TERMINAL DNA RECOGNITION DOMAIN OF THE REMARK 900 BACILLUS SUBTILIS TRANSITION-STATE REGULATOR ABRB REMARK 900 RELATED ID: 2FY9 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE N-TERMINAL DNA RECOGNITION DOMAIN OF THE REMARK 900 BACILLUS SUBTILIS TRANSITION-STATE REGULATOR ABH REMARK 900 RELATED ID: 2RO3 RELATED DB: PDB REMARK 900 RELATED ID: 2RO4 RELATED DB: PDB DBREF 2RO5 A 1 55 UNP P37554 SP5T_BACSU 1 55 DBREF 2RO5 B 1 55 UNP P37554 SP5T_BACSU 1 55 SEQRES 1 A 55 MET LYS ALA THR GLY ILE VAL ARG ARG ILE ASP ASP LEU SEQRES 2 A 55 GLY ARG VAL VAL ILE PRO LYS GLU ILE ARG ARG THR LEU SEQRES 3 A 55 ARG ILE ARG GLU GLY ASP PRO LEU GLU ILE PHE VAL ASP SEQRES 4 A 55 ARG ASP GLY GLU VAL ILE LEU LYS LYS TYR SER PRO ILE SEQRES 5 A 55 SER GLU LEU SEQRES 1 B 55 MET LYS ALA THR GLY ILE VAL ARG ARG ILE ASP ASP LEU SEQRES 2 B 55 GLY ARG VAL VAL ILE PRO LYS GLU ILE ARG ARG THR LEU SEQRES 3 B 55 ARG ILE ARG GLU GLY ASP PRO LEU GLU ILE PHE VAL ASP SEQRES 4 B 55 ARG ASP GLY GLU VAL ILE LEU LYS LYS TYR SER PRO ILE SEQRES 5 B 55 SER GLU LEU HELIX 1 1 PRO A 19 ARG A 27 1 9 HELIX 2 2 PRO B 19 ARG B 27 1 9 SHEET 1 A 6 ILE A 6 ARG A 9 0 SHEET 2 A 6 PRO B 33 VAL B 38 -1 O LEU B 34 N ARG A 8 SHEET 3 A 6 VAL B 44 LYS B 47 -1 O ILE B 45 N PHE B 37 SHEET 4 A 6 GLU A 43 LYS A 47 -1 N VAL A 44 O LEU B 46 SHEET 5 A 6 PRO A 33 VAL A 38 -1 N PHE A 37 O ILE A 45 SHEET 6 A 6 ILE B 6 ARG B 9 -1 O ARG B 8 N LEU A 34 SHEET 1 B 2 ARG A 15 VAL A 17 0 SHEET 2 B 2 ARG B 15 VAL B 17 -1 O VAL B 16 N VAL A 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1