HEADER TRANSFERASE 05-APR-08 2ROQ TITLE SOLUTION STRUCTURE OF THE THIOLATION-THIOESTERASE DI-DOMAIN OF TITLE 2 ENTEROBACTIN SYNTHETASE COMPONENT F COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENTEROBACTIN SYNTHETASE COMPONENT F; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TTE, UNP RESIDUES 960-1293; COMPND 5 SYNONYM: ENTEROCHELIN SYNTHASE F, SERINE-ACTIVATING ENZYME, SERYL-AMP COMPND 6 LIGASE; COMPND 7 EC: 2.7.7.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: ENT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET30A+ KEYWDS ENTF, T-TE, PCP, THIOESTERASE, PEPTIDYL CARRIER PROTEIN, THIOLATION KEYWDS 2 DOMAIN, ENTEROBACTIN, NON-RIBOSOMAL PEPTIDE SYNTHETASE, NRPS, KEYWDS 3 ALPHA/BETA-HYDROLASE, DIDOMAIN, ENTEROBACTIN BIOSYNTHESIS, ION KEYWDS 4 TRANSPORT, IRON, IRON TRANSPORT, LIGASE, MULTIFUNCTIONAL ENZYME, KEYWDS 5 PHOSPHOPANTETHEINE, TRANSFERASE, TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.P.FRUEH,H.ARTHANARI,A.KOGLIN,D.A.VOSBURG,A.E.BENNETT,C.T.WALSH, AUTHOR 2 G.WAGNER REVDAT 4 10-NOV-21 2ROQ 1 REMARK SEQADV REVDAT 3 24-FEB-09 2ROQ 1 VERSN REVDAT 2 07-OCT-08 2ROQ 1 JRNL REVDAT 1 12-AUG-08 2ROQ 0 JRNL AUTH D.P.FRUEH,H.ARTHANARI,A.KOGLIN,D.A.VOSBURG,A.E.BENNETT, JRNL AUTH 2 C.T.WALSH,G.WAGNER JRNL TITL DYNAMIC THIOLATION-THIOESTERASE STRUCTURE OF A NON-RIBOSOMAL JRNL TITL 2 PEPTIDE SYNTHETASE JRNL REF NATURE V. 454 903 2008 JRNL REFN ISSN 0028-0836 JRNL PMID 18704088 JRNL DOI 10.1038/NATURE07162 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ROQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000150103. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.72 REMARK 210 IONIC STRENGTH : 150 MM NACL, 20 MM NAPI REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-100% 15N] TTE, 20 MM REMARK 210 SODIUM PHOSPHATE, 150 MM SODIUM REMARK 210 CHLORIDE, 1 MM EDTA, 1 MM DTT, REMARK 210 95% H2O/5% D2O; 0.3 MM [U-13C; U- REMARK 210 15N; U-2H] TTE, 20 MM SODIUM REMARK 210 PHOSPHATE, 150 MM SODIUM REMARK 210 CHLORIDE, 1 MM EDTA, 1 MM DTT, REMARK 210 95% H2O/5% D2O; 0.3 MM 1H-ME-ILV- REMARK 210 U-2H-U13C-U15N TTE, 20 MM SODIUM REMARK 210 PHOSPHATE, 150 MM SODIUM REMARK 210 CHLORIDE, 1 MM EDTA, 1 MM DTT, REMARK 210 95% H2O/5% D2O; 0.3 MM 1H-13C-ME- REMARK 210 ILV-U-2H-U12C-U15N TTE, 20 MM REMARK 210 SODIUM PHOSPHATE, 150 MM SODIUM REMARK 210 CHLORIDE, 1 MM EDTA, 1 MM DTT, REMARK 210 95% H2O/5% D2O; 0.3 MM [U-98% REMARK 210 13C; U-98% 15N] TTE, 20 MM REMARK 210 SODIUM PHOSPHATE, 150 MM SODIUM REMARK 210 CHLORIDE, 1 MM EDTA, 1 MM DTT, REMARK 210 95% H2O/5% D2O; 0.1 MM 15N- REMARK 210 SELECTIVE-K OR ILVYFG TTE, 20 MM REMARK 210 SODIUM PHOSPHATE, 150 MM SODIUM REMARK 210 CHLORIDE, 1 MM EDTA, 1 MM DTT, REMARK 210 95% H2O/5% D2O; 0.3 MM 13C'-PRO- REMARK 210 U-15N TTE, 20 MM SODIUM REMARK 210 PHOSPHATE, 150 MM SODIUM REMARK 210 CHLORIDE, 1 MM EDTA, 1 MM DTT, REMARK 210 95% H2O/5% D2O; 0.3 MM 70%2H-U15- REMARK 210 U13C TTE, 20 MM SODIUM PHOSPHATE, REMARK 210 150 MM SODIUM CHLORIDE, 1 MM REMARK 210 EDTA, 1 MM DTT, 95% H2O/5% D2O; REMARK 210 0.3 MM [U-13C; U-15N] TTE, 20 MM REMARK 210 SODIUM PHOSPHATE, 150 MM SODIUM REMARK 210 CHLORIDE, 1 MM EDTA, 1 MM DTT, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HNCACB; 3D HN(CO)CA; 3D REMARK 210 HN(CA)CO; 3D HNCO-NUS; 3D HNCA- REMARK 210 NUS; 3D 13CDET-MQ-HACACO; 3D REMARK 210 C(CO)NH; 3D H(CCO)NH; 3D HCCH- REMARK 210 COSY; 3D 1H-15N NOESY; 3D HCCH- REMARK 210 TOCSY; 3D-TS-NOESY-HSQC; 4D-TS- REMARK 210 HSQC-NOESY-HSQC; 3D-HSQC-NOESY; REMARK 210 3D-HN(CA)NH-NUS; 3D HN(COCA)CB REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 750 MHZ; 600 MHZ; 500 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, CARA 1.8.2, TALOS, REMARK 210 NMRPIPE 05, MOLMOL 2K REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NUS: NON-UNIFORMLY SAMPLED. TS: TIME-SHARED. ALL REMARK 210 EXPERIMENTS ARE TROSY EXCEPT FOR THE TS-HSQC-NOESY.HN(CA)NH IS REMARK 210 DOUBLE TROSY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 2 154.70 64.25 REMARK 500 1 ALA A 7 -77.25 68.99 REMARK 500 1 GLN A 8 86.88 60.29 REMARK 500 1 ALA A 13 66.87 64.61 REMARK 500 1 PRO A 14 -170.45 -69.73 REMARK 500 1 LYS A 15 -169.35 -70.23 REMARK 500 1 LEU A 29 -67.55 -97.70 REMARK 500 1 ASP A 33 31.91 175.38 REMARK 500 1 GLN A 35 32.63 -163.94 REMARK 500 1 THR A 67 -58.12 173.22 REMARK 500 1 VAL A 71 -75.32 -149.45 REMARK 500 1 VAL A 73 -38.59 -157.67 REMARK 500 1 SER A 75 -74.83 179.43 REMARK 500 1 THR A 76 -172.93 -173.97 REMARK 500 1 ALA A 86 -76.92 -92.80 REMARK 500 1 GLU A 87 153.08 179.85 REMARK 500 1 GLU A 88 -75.30 -53.22 REMARK 500 1 ARG A 93 100.03 -50.85 REMARK 500 1 MET A 94 174.96 -57.92 REMARK 500 1 GLU A 97 -169.94 -70.25 REMARK 500 1 ASN A 106 -73.74 -119.72 REMARK 500 1 HIS A 114 56.81 70.12 REMARK 500 1 GLN A 133 40.81 179.79 REMARK 500 1 TRP A 134 -173.28 -58.85 REMARK 500 1 ASN A 145 43.87 -179.63 REMARK 500 1 SER A 180 -81.08 66.73 REMARK 500 1 PHE A 202 123.24 -173.46 REMARK 500 1 ASP A 207 -77.88 175.84 REMARK 500 1 THR A 208 119.03 179.22 REMARK 500 1 TRP A 209 75.17 -175.29 REMARK 500 1 PRO A 211 93.71 -69.71 REMARK 500 1 GLU A 212 -69.67 -170.90 REMARK 500 1 GLN A 214 -175.39 -58.05 REMARK 500 1 LYS A 219 86.31 -153.10 REMARK 500 1 LEU A 224 97.27 -64.36 REMARK 500 1 SER A 248 -76.35 -49.98 REMARK 500 1 ASP A 275 52.08 -91.76 REMARK 500 1 ALA A 283 77.14 -110.81 REMARK 500 1 SER A 292 72.18 -157.46 REMARK 500 1 PRO A 293 -179.64 -69.76 REMARK 500 1 GLU A 294 77.11 -161.14 REMARK 500 1 SER A 298 73.64 61.75 REMARK 500 1 TRP A 300 -73.78 -51.99 REMARK 500 1 ASP A 310 92.68 -63.99 REMARK 500 1 ILE A 325 50.87 -98.46 REMARK 500 1 HIS A 339 -178.32 60.66 REMARK 500 2 ALA A 9 -61.46 -179.22 REMARK 500 2 ALA A 13 154.53 66.33 REMARK 500 2 LYS A 15 -32.31 178.19 REMARK 500 2 CYS A 32 117.90 66.57 REMARK 500 REMARK 500 THIS ENTRY HAS 862 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2ROQ A 2 335 UNP P11454 ENTF_ECOLI 960 1293 SEQADV 2ROQ MET A 1 UNP P11454 EXPRESSION TAG SEQADV 2ROQ ALA A 48 UNP P11454 SER 1006 ENGINEERED MUTATION SEQADV 2ROQ LEU A 336 UNP P11454 EXPRESSION TAG SEQADV 2ROQ GLU A 337 UNP P11454 EXPRESSION TAG SEQADV 2ROQ HIS A 338 UNP P11454 EXPRESSION TAG SEQADV 2ROQ HIS A 339 UNP P11454 EXPRESSION TAG SEQADV 2ROQ HIS A 340 UNP P11454 EXPRESSION TAG SEQADV 2ROQ HIS A 341 UNP P11454 EXPRESSION TAG SEQADV 2ROQ HIS A 342 UNP P11454 EXPRESSION TAG SEQADV 2ROQ HIS A 343 UNP P11454 EXPRESSION TAG SEQRES 1 A 343 MET LEU PRO GLU LEU LYS ALA GLN ALA PRO GLY ARG ALA SEQRES 2 A 343 PRO LYS ALA GLY SER GLU THR ILE ILE ALA ALA ALA PHE SEQRES 3 A 343 SER SER LEU LEU GLY CYS ASP VAL GLN ASP ALA ASP ALA SEQRES 4 A 343 ASP PHE PHE ALA LEU GLY GLY HIS ALA LEU LEU ALA MET SEQRES 5 A 343 LYS LEU ALA ALA GLN LEU SER ARG GLN VAL ALA ARG GLN SEQRES 6 A 343 VAL THR PRO GLY GLN VAL MET VAL ALA SER THR VAL ALA SEQRES 7 A 343 LYS LEU ALA THR ILE ILE ASP ALA GLU GLU ASP SER THR SEQRES 8 A 343 ARG ARG MET GLY PHE GLU THR ILE LEU PRO LEU ARG GLU SEQRES 9 A 343 GLY ASN GLY PRO THR LEU PHE CYS PHE HIS PRO ALA SER SEQRES 10 A 343 GLY PHE ALA TRP GLN PHE SER VAL LEU SER ARG TYR LEU SEQRES 11 A 343 ASP PRO GLN TRP SER ILE ILE GLY ILE GLN SER PRO ARG SEQRES 12 A 343 PRO ASN GLY PRO MET GLN THR ALA ALA ASN LEU ASP GLU SEQRES 13 A 343 VAL CYS GLU ALA HIS LEU ALA THR LEU LEU GLU GLN GLN SEQRES 14 A 343 PRO HIS GLY PRO TYR TYR LEU LEU GLY TYR SER LEU GLY SEQRES 15 A 343 GLY THR LEU ALA GLN GLY ILE ALA ALA ARG LEU ARG ALA SEQRES 16 A 343 ARG GLY GLU GLN VAL ALA PHE LEU GLY LEU LEU ASP THR SEQRES 17 A 343 TRP PRO PRO GLU THR GLN ASN TRP GLN GLU LYS GLU ALA SEQRES 18 A 343 ASN GLY LEU ASP PRO GLU VAL LEU ALA GLU ILE ASN ARG SEQRES 19 A 343 GLU ARG GLU ALA PHE LEU ALA ALA GLN GLN GLY SER THR SEQRES 20 A 343 SER THR GLU LEU PHE THR THR ILE GLU GLY ASN TYR ALA SEQRES 21 A 343 ASP ALA VAL ARG LEU LEU THR THR ALA HIS SER VAL PRO SEQRES 22 A 343 PHE ASP GLY LYS ALA THR LEU PHE VAL ALA GLU ARG THR SEQRES 23 A 343 LEU GLN GLU GLY MET SER PRO GLU ARG ALA TRP SER PRO SEQRES 24 A 343 TRP ILE ALA GLU LEU ASP ILE TYR ARG GLN ASP CYS ALA SEQRES 25 A 343 HIS VAL ASP ILE ILE SER PRO GLY THR PHE GLU LYS ILE SEQRES 26 A 343 GLY PRO ILE ILE ARG ALA THR LEU ASN ARG LEU GLU HIS SEQRES 27 A 343 HIS HIS HIS HIS HIS HELIX 1 1 GLY A 17 LEU A 30 1 14 HELIX 2 2 ASP A 40 GLY A 45 1 6 HELIX 3 3 LEU A 49 VAL A 62 1 14 HELIX 4 4 THR A 76 ASP A 85 1 10 HELIX 5 5 PHE A 123 ASP A 131 1 9 HELIX 6 6 ALA A 152 GLN A 169 1 18 HELIX 7 7 LEU A 181 GLY A 197 1 17 HELIX 8 8 ASN A 215 GLY A 223 5 9 HELIX 9 9 GLU A 227 LEU A 240 1 14 HELIX 10 10 THR A 249 LEU A 266 1 18 HELIX 11 11 ARG A 285 LEU A 287 5 3 HELIX 12 12 SER A 318 ILE A 325 1 8 HELIX 13 13 PRO A 327 HIS A 338 1 12 SHEET 1 A 7 LEU A 100 ARG A 103 0 SHEET 2 A 7 SER A 135 GLY A 138 -1 O ILE A 136 N ARG A 103 SHEET 3 A 7 THR A 109 CYS A 112 1 N LEU A 110 O SER A 135 SHEET 4 A 7 TYR A 175 TYR A 179 1 O LEU A 177 N PHE A 111 SHEET 5 A 7 PHE A 202 LEU A 206 1 O GLY A 204 N LEU A 176 SHEET 6 A 7 LYS A 277 ALA A 283 1 O THR A 279 N LEU A 205 SHEET 7 A 7 GLU A 303 GLN A 309 1 O TYR A 307 N VAL A 282 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1