HEADER TRANSCRIPTION 30-APR-08 2RP4 TITLE SOLUTION STRUCTURE OF THE OLIGOMERIZATION DOMAIN IN DMP53 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR P53; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: OLIGOMERIZATION DOMAIN OF THE DMP53, UNP RESIDUES 315-385; COMPND 5 SYNONYM: GH11591P, TRANSCRIPTION FACTOR, P53 TUMOR SUPPRESSOR-LIKE COMPND 6 PROTEIN, P53-LIKE REGULATOR OF APOPTOSIS AND CELL CYCLE, CG33336-PA, COMPND 7 ISOFORM A; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: P53, PRAC, CG10873, DMEL_CG33336; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBH4 KEYWDS DMP53, P53, OLIGOMERIZATION DOMAIN, TETRAMERIZAITON DOMAIN, NUCLEUS, KEYWDS 2 TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.D.OU,V.DOETSCH REVDAT 4 29-MAY-24 2RP4 1 REMARK REVDAT 3 16-MAR-22 2RP4 1 REMARK SEQADV REVDAT 2 24-FEB-09 2RP4 1 VERSN REVDAT 1 27-MAY-08 2RP4 0 JRNL AUTH H.D.OU,F.LOEHR,V.VOGEL,W.MAENTELE,V.DOETSCH JRNL TITL STRUCTURAL EVOLUTION OF C-TERMINAL DOMAINS IN THE P53 FAMILY JRNL REF EMBO J. V. 26 3463 2007 JRNL REFN ISSN 0261-4189 JRNL PMID 17581633 JRNL DOI 10.1038/SJ.EMBOJ.7601764 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2, ARIA 1.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE, NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE, NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 100 STRUCTURES WERE CALCULATED WITH REMARK 3 ARIA1.2, THEN 20 LOWEST ENERGIES STRUCTURES UNDERWENT WATER REMARK 3 REFINEMENT REMARK 4 REMARK 4 2RP4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000150114. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM SODIUM PHOSPHATE, 100MM REMARK 210 SODIUM CHLORIDE, 0.03% SODIUM REMARK 210 AZIDE, 0.5-0.8MM [U-15N] PROTEIN, REMARK 210 90% H2O/10% D2O; 20MM SODIUM REMARK 210 PHOSPHATE, 100MM SODIUM CHLORIDE, REMARK 210 0.03% SODIUM AZIDE, 0.5-0.8MM REMARK 210 [U-13C; U-15N] PROTEIN, 90% H2O/ REMARK 210 10% D2O; 20MM SODIUM PHOSPHATE, REMARK 210 100MM SODIUM CHLORIDE, 0.5-0.8MM REMARK 210 PROTEIN, 100% D2O; 20MM SODIUM REMARK 210 PHOSPHATE, 100MM SODIUM CHLORIDE, REMARK 210 0.5MM [U-13C; U-15N] PROTEIN, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D 1H REMARK 210 -15N NOESY; 3D 1H-13C NOESY; 2D REMARK 210 1H-1H NOESY; 4D J RESOLVED NOESY; REMARK 210 2D 1H-1H TOCSY; 3D HN(CO)CA REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY, TALOS, XWINNMR, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 310 REMARK 465 PRO A 311 REMARK 465 LEU A 312 REMARK 465 GLY A 313 REMARK 465 SER A 314 REMARK 465 GLY B 310 REMARK 465 PRO B 311 REMARK 465 LEU B 312 REMARK 465 GLY B 313 REMARK 465 SER B 314 REMARK 465 GLY C 310 REMARK 465 PRO C 311 REMARK 465 LEU C 312 REMARK 465 GLY C 313 REMARK 465 SER C 314 REMARK 465 GLY D 310 REMARK 465 PRO D 311 REMARK 465 LEU D 312 REMARK 465 GLY D 313 REMARK 465 SER D 314 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU D 348 HZ3 LYS D 378 1.57 REMARK 500 HZ3 LYS C 352 OE2 GLU D 353 1.57 REMARK 500 OE2 GLU C 353 HZ3 LYS D 352 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 316 18.75 -146.11 REMARK 500 1 SER A 317 -78.35 -95.43 REMARK 500 1 ALA A 319 -58.72 67.82 REMARK 500 1 GLU A 320 -149.46 -110.40 REMARK 500 1 TRP A 321 62.09 63.44 REMARK 500 1 ASP A 330 -67.48 75.42 REMARK 500 1 ALA B 319 -62.27 62.50 REMARK 500 1 GLU B 320 -139.53 -122.71 REMARK 500 1 TRP B 321 66.20 71.31 REMARK 500 1 ALA C 319 -64.99 71.35 REMARK 500 1 GLU C 320 -150.22 -123.75 REMARK 500 1 TRP C 321 70.92 60.52 REMARK 500 1 ASP C 330 -63.08 77.86 REMARK 500 1 ALA D 319 -70.71 65.07 REMARK 500 1 GLU D 320 -156.85 -114.70 REMARK 500 1 ASP D 330 -67.87 78.49 REMARK 500 2 ALA A 319 -56.44 -158.91 REMARK 500 2 GLU A 320 -165.75 -109.28 REMARK 500 2 ALA B 319 -60.46 -163.60 REMARK 500 2 GLU B 320 -161.40 -110.64 REMARK 500 2 TRP B 321 78.80 56.85 REMARK 500 2 SER B 324 -165.69 -165.02 REMARK 500 2 ALA C 319 -49.78 -167.93 REMARK 500 2 GLU C 320 -160.44 -110.25 REMARK 500 2 TRP C 321 80.13 52.00 REMARK 500 2 ALA D 319 -41.30 -132.74 REMARK 500 2 GLU D 320 -163.29 -101.62 REMARK 500 2 TRP D 321 78.10 54.60 REMARK 500 3 ASP A 316 48.99 -80.36 REMARK 500 3 SER A 317 -169.93 -167.04 REMARK 500 3 ALA A 319 100.36 -177.62 REMARK 500 3 GLU A 320 -143.95 55.94 REMARK 500 3 TRP A 321 73.68 60.35 REMARK 500 3 SER A 324 -165.02 -168.13 REMARK 500 3 LEU A 384 133.71 59.37 REMARK 500 3 ALA B 319 85.36 -168.97 REMARK 500 3 GLU B 320 -147.98 53.77 REMARK 500 3 TRP B 321 79.18 51.69 REMARK 500 3 LEU B 384 117.89 68.46 REMARK 500 3 ALA C 319 90.79 -171.37 REMARK 500 3 GLU C 320 -147.93 54.96 REMARK 500 3 TRP C 321 66.02 67.89 REMARK 500 3 LEU C 384 120.00 63.98 REMARK 500 3 SER D 317 -165.55 -169.88 REMARK 500 3 ALA D 319 71.31 -175.39 REMARK 500 3 GLU D 320 -145.05 59.91 REMARK 500 3 TRP D 321 70.87 58.45 REMARK 500 3 LEU D 384 143.88 60.86 REMARK 500 4 ALA A 319 -85.68 -166.72 REMARK 500 4 GLU A 320 -155.30 -122.96 REMARK 500 REMARK 500 THIS ENTRY HAS 286 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RP5 RELATED DB: PDB DBREF 2RP4 A 315 385 UNP Q9N6D8 Q9N6D8_DROME 315 385 DBREF 2RP4 B 315 385 UNP Q9N6D8 Q9N6D8_DROME 315 385 DBREF 2RP4 C 315 385 UNP Q9N6D8 Q9N6D8_DROME 315 385 DBREF 2RP4 D 315 385 UNP Q9N6D8 Q9N6D8_DROME 315 385 SEQADV 2RP4 GLY A 310 UNP Q9N6D8 EXPRESSION TAG SEQADV 2RP4 PRO A 311 UNP Q9N6D8 EXPRESSION TAG SEQADV 2RP4 LEU A 312 UNP Q9N6D8 EXPRESSION TAG SEQADV 2RP4 GLY A 313 UNP Q9N6D8 EXPRESSION TAG SEQADV 2RP4 SER A 314 UNP Q9N6D8 EXPRESSION TAG SEQADV 2RP4 GLY B 310 UNP Q9N6D8 EXPRESSION TAG SEQADV 2RP4 PRO B 311 UNP Q9N6D8 EXPRESSION TAG SEQADV 2RP4 LEU B 312 UNP Q9N6D8 EXPRESSION TAG SEQADV 2RP4 GLY B 313 UNP Q9N6D8 EXPRESSION TAG SEQADV 2RP4 SER B 314 UNP Q9N6D8 EXPRESSION TAG SEQADV 2RP4 GLY C 310 UNP Q9N6D8 EXPRESSION TAG SEQADV 2RP4 PRO C 311 UNP Q9N6D8 EXPRESSION TAG SEQADV 2RP4 LEU C 312 UNP Q9N6D8 EXPRESSION TAG SEQADV 2RP4 GLY C 313 UNP Q9N6D8 EXPRESSION TAG SEQADV 2RP4 SER C 314 UNP Q9N6D8 EXPRESSION TAG SEQADV 2RP4 GLY D 310 UNP Q9N6D8 EXPRESSION TAG SEQADV 2RP4 PRO D 311 UNP Q9N6D8 EXPRESSION TAG SEQADV 2RP4 LEU D 312 UNP Q9N6D8 EXPRESSION TAG SEQADV 2RP4 GLY D 313 UNP Q9N6D8 EXPRESSION TAG SEQADV 2RP4 SER D 314 UNP Q9N6D8 EXPRESSION TAG SEQRES 1 A 76 GLY PRO LEU GLY SER ASP ASP SER ALA ALA GLU TRP ASN SEQRES 2 A 76 VAL SER ARG THR PRO ASP GLY ASP TYR ARG LEU ALA ILE SEQRES 3 A 76 THR CYS PRO ASN LYS GLU TRP LEU LEU GLN SER ILE GLU SEQRES 4 A 76 GLY MET ILE LYS GLU ALA ALA ALA GLU VAL LEU ARG ASN SEQRES 5 A 76 PRO ASN GLN GLU ASN LEU ARG ARG HIS ALA ASN LYS LEU SEQRES 6 A 76 LEU SER LEU LYS LYS ARG ALA TYR GLU LEU PRO SEQRES 1 B 76 GLY PRO LEU GLY SER ASP ASP SER ALA ALA GLU TRP ASN SEQRES 2 B 76 VAL SER ARG THR PRO ASP GLY ASP TYR ARG LEU ALA ILE SEQRES 3 B 76 THR CYS PRO ASN LYS GLU TRP LEU LEU GLN SER ILE GLU SEQRES 4 B 76 GLY MET ILE LYS GLU ALA ALA ALA GLU VAL LEU ARG ASN SEQRES 5 B 76 PRO ASN GLN GLU ASN LEU ARG ARG HIS ALA ASN LYS LEU SEQRES 6 B 76 LEU SER LEU LYS LYS ARG ALA TYR GLU LEU PRO SEQRES 1 C 76 GLY PRO LEU GLY SER ASP ASP SER ALA ALA GLU TRP ASN SEQRES 2 C 76 VAL SER ARG THR PRO ASP GLY ASP TYR ARG LEU ALA ILE SEQRES 3 C 76 THR CYS PRO ASN LYS GLU TRP LEU LEU GLN SER ILE GLU SEQRES 4 C 76 GLY MET ILE LYS GLU ALA ALA ALA GLU VAL LEU ARG ASN SEQRES 5 C 76 PRO ASN GLN GLU ASN LEU ARG ARG HIS ALA ASN LYS LEU SEQRES 6 C 76 LEU SER LEU LYS LYS ARG ALA TYR GLU LEU PRO SEQRES 1 D 76 GLY PRO LEU GLY SER ASP ASP SER ALA ALA GLU TRP ASN SEQRES 2 D 76 VAL SER ARG THR PRO ASP GLY ASP TYR ARG LEU ALA ILE SEQRES 3 D 76 THR CYS PRO ASN LYS GLU TRP LEU LEU GLN SER ILE GLU SEQRES 4 D 76 GLY MET ILE LYS GLU ALA ALA ALA GLU VAL LEU ARG ASN SEQRES 5 D 76 PRO ASN GLN GLU ASN LEU ARG ARG HIS ALA ASN LYS LEU SEQRES 6 D 76 LEU SER LEU LYS LYS ARG ALA TYR GLU LEU PRO HELIX 1 1 ASN A 339 ASN A 361 1 23 HELIX 2 2 GLN A 364 LEU A 384 1 21 HELIX 3 3 ASN B 339 ASN B 361 1 23 HELIX 4 4 GLN B 364 LEU B 384 1 21 HELIX 5 5 ASN C 339 ASN C 361 1 23 HELIX 6 6 GLN C 364 LEU C 384 1 21 HELIX 7 7 ASN D 339 ASN D 361 1 23 HELIX 8 8 GLN D 364 LEU D 384 1 21 SHEET 1 A 4 ASN A 322 SER A 324 0 SHEET 2 A 4 TYR A 331 CYS A 337 -1 O ARG A 332 N SER A 324 SHEET 3 A 4 TYR B 331 CYS B 337 -1 O ILE B 335 N LEU A 333 SHEET 4 A 4 ASN B 322 ARG B 325 -1 N ASN B 322 O ALA B 334 SHEET 1 B 4 ASN C 322 SER C 324 0 SHEET 2 B 4 TYR C 331 CYS C 337 -1 O ALA C 334 N ASN C 322 SHEET 3 B 4 ASP D 330 CYS D 337 -1 O ILE D 335 N LEU C 333 SHEET 4 B 4 ASN D 322 THR D 326 -1 N SER D 324 O ARG D 332 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1