HEADER IMMUNE SYSTEM 28-OCT-08 2RPV TITLE SOLUTION STRUCTURE OF GB1 WITH LBT PROBE COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN G-BINDING PROTEIN G; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: L2GB; COMPND 5 SYNONYM: IGG-BINDING PROTEIN G; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS SP. GROUP G; SOURCE 3 ORGANISM_TAXID: 1320; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PETDUET KEYWDS LANTHANIDE BINDING PEPTIDE, GB1, LBT, PARAMAGNETIC EFFECT, OLIVIA, KEYWDS 2 CELL WALL, IGG-BINDING PROTEIN, PEPTIDOGLYCAN-ANCHOR, SECRETED, KEYWDS 3 IMMUNE SYSTEM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.SAIO,K.OGURA,M.YOKOCHI,Y.KOBASHIGAWA,F.INAGAKI REVDAT 3 16-OCT-24 2RPV 1 REMARK REVDAT 2 10-NOV-21 2RPV 1 REMARK SEQADV REVDAT 1 15-SEP-09 2RPV 0 JRNL AUTH T.SAIO,K.OGURA,M.YOKOCHI,Y.KOBASHIGAWA,F.INAGAKI JRNL TITL TWO-POINT ANCHORING OF A LANTHANIDE-BINDING PEPTIDE TO A JRNL TITL 2 TARGET PROTEIN ENHANCES THE PARAMAGNETIC ANISOTROPIC EFFECT JRNL REF J.BIOMOL.NMR V. 44 157 2009 JRNL REFN ISSN 0925-2738 JRNL PMID 19468839 JRNL DOI 10.1007/S10858-009-9325-Z REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : OLIVIA 1.14.3, CYANA REMARK 3 AUTHORS : MASASHI YOKOCHI (OLIVIA), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RPV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000150141. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM [U-99% 13C; U-99% 15N] REMARK 210 L2GB, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D HN(CO) REMARK 210 CA; 3D HNCAHA; 3D HCCH-TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : OLIVIA 1.14.3, CYANA REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 4 LA LA A 76 1.32 REMARK 500 CG ASP A 4 LA LA A 76 1.55 REMARK 500 OD2 ASP A 4 LA LA A 76 1.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 12 115.57 -161.86 REMARK 500 1 THR A 68 14.76 -142.27 REMARK 500 1 LYS A 69 62.77 39.62 REMARK 500 2 ASN A 7 29.82 82.06 REMARK 500 2 GLU A 12 113.54 -164.36 REMARK 500 2 LYS A 69 56.33 39.95 REMARK 500 3 THR A 35 175.12 179.57 REMARK 500 5 ASN A 7 30.15 81.55 REMARK 500 8 GLU A 12 114.63 -161.15 REMARK 500 8 THR A 35 174.16 179.93 REMARK 500 9 GLU A 12 114.80 -161.19 REMARK 500 9 THR A 68 14.95 -142.53 REMARK 500 9 LYS A 69 62.89 39.70 REMARK 500 10 ASN A 7 22.61 83.90 REMARK 500 11 ASN A 7 32.40 74.73 REMARK 500 11 THR A 68 14.03 -140.94 REMARK 500 11 LYS A 69 53.89 39.71 REMARK 500 12 GLU A 12 114.79 -160.73 REMARK 500 13 ASN A 7 30.28 81.71 REMARK 500 13 GLU A 12 114.25 -163.83 REMARK 500 13 LYS A 69 51.06 39.95 REMARK 500 14 ASN A 7 30.24 79.94 REMARK 500 14 GLU A 12 114.80 -163.07 REMARK 500 14 THR A 68 16.98 -145.53 REMARK 500 14 LYS A 69 62.21 38.90 REMARK 500 15 ASN A 7 31.54 76.72 REMARK 500 15 THR A 68 13.69 -140.60 REMARK 500 16 ASN A 7 30.71 79.80 REMARK 500 17 ASN A 7 30.48 75.58 REMARK 500 17 LYS A 69 62.17 39.79 REMARK 500 18 GLU A 12 113.55 -165.15 REMARK 500 18 LYS A 69 57.41 39.76 REMARK 500 19 ASN A 7 32.77 73.60 REMARK 500 19 GLU A 12 114.81 -161.29 REMARK 500 19 THR A 35 -179.53 -176.19 REMARK 500 19 LYS A 69 53.93 39.82 REMARK 500 20 ASN A 7 31.45 79.13 REMARK 500 20 LEU A 16 43.10 -105.56 REMARK 500 20 THR A 35 176.39 179.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LA A 76 REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL RESIDUES 1-16 IS A PARAMAGNETIC LANTHANIDE TAG, REMARK 999 AND RESIDUES 17-19 ARE LINKERS. DBREF 2RPV A 20 75 UNP P06654 SPG1_STRSG 227 282 SEQADV 2RPV CYS A 1 UNP P06654 SEE REMARK 999 SEQADV 2RPV TYR A 2 UNP P06654 SEE REMARK 999 SEQADV 2RPV VAL A 3 UNP P06654 SEE REMARK 999 SEQADV 2RPV ASP A 4 UNP P06654 SEE REMARK 999 SEQADV 2RPV THR A 5 UNP P06654 SEE REMARK 999 SEQADV 2RPV ASN A 6 UNP P06654 SEE REMARK 999 SEQADV 2RPV ASN A 7 UNP P06654 SEE REMARK 999 SEQADV 2RPV ASP A 8 UNP P06654 SEE REMARK 999 SEQADV 2RPV GLY A 9 UNP P06654 SEE REMARK 999 SEQADV 2RPV ALA A 10 UNP P06654 SEE REMARK 999 SEQADV 2RPV TYR A 11 UNP P06654 SEE REMARK 999 SEQADV 2RPV GLU A 12 UNP P06654 SEE REMARK 999 SEQADV 2RPV GLY A 13 UNP P06654 SEE REMARK 999 SEQADV 2RPV ASP A 14 UNP P06654 SEE REMARK 999 SEQADV 2RPV GLU A 15 UNP P06654 SEE REMARK 999 SEQADV 2RPV LEU A 16 UNP P06654 SEE REMARK 999 SEQADV 2RPV SER A 17 UNP P06654 SEE REMARK 999 SEQADV 2RPV GLY A 18 UNP P06654 SEE REMARK 999 SEQADV 2RPV THR A 19 UNP P06654 SEE REMARK 999 SEQADV 2RPV MET A 20 UNP P06654 ASP 227 CONFLICT SEQADV 2RPV GLU A 21 UNP P06654 THR 228 CONFLICT SEQADV 2RPV CYS A 38 UNP P06654 GLU 245 ENGINEERED MUTATION SEQRES 1 A 75 CYS TYR VAL ASP THR ASN ASN ASP GLY ALA TYR GLU GLY SEQRES 2 A 75 ASP GLU LEU SER GLY THR MET GLU TYR LYS LEU ILE LEU SEQRES 3 A 75 ASN GLY LYS THR LEU LYS GLY GLU THR THR THR CYS ALA SEQRES 4 A 75 VAL ASP ALA ALA THR ALA GLU LYS VAL PHE LYS GLN TYR SEQRES 5 A 75 ALA ASN ASP ASN GLY VAL ASP GLY GLU TRP THR TYR ASP SEQRES 6 A 75 ASP ALA THR LYS THR PHE THR VAL THR GLU HET LA A 76 1 HETNAM LA LANTHANUM (III) ION FORMUL 2 LA LA 3+ HELIX 1 1 GLY A 13 SER A 17 5 5 HELIX 2 2 ASP A 41 GLY A 57 1 17 SHEET 1 A 4 LYS A 32 ALA A 39 0 SHEET 2 A 4 MET A 20 ASN A 27 -1 N TYR A 22 O THR A 37 SHEET 3 A 4 THR A 70 THR A 74 1 O PHE A 71 N ILE A 25 SHEET 4 A 4 GLU A 61 ASP A 65 -1 N THR A 63 O THR A 72 SSBOND 1 CYS A 1 CYS A 38 1555 1555 1.99 SITE 1 AC1 5 VAL A 3 ASP A 4 THR A 5 ASN A 7 SITE 2 AC1 5 ASP A 8 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1