HEADER CHAPERONE 14-AUG-09 2RQM TITLE NMR SOLUTION STRUCTURE OF MESODERM DEVELOPMENT (MESD) - OPEN TITLE 2 CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MESODERM DEVELOPMENT CANDIDATE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: D45-K184 CONSERVED CORE REGION, UNP RESIDUES 45-184; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MESDC2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-30 XA/LIC KEYWDS CHAPERONE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.KOEHLER,J.K.LIGHTHOUSE,T.WERTHER,O.M.ANDERSEN,A.DIEHL,P.SCHMIEDER, AUTHOR 2 B.C.HOLDENER,H.OSCHKINAT REVDAT 3 01-MAY-24 2RQM 1 REMARK SEQADV REVDAT 2 13-APR-11 2RQM 1 JRNL REVDAT 1 25-AUG-09 2RQM 0 JRNL AUTH C.KOHLER,J.K.LIGHTHOUSE,T.WERTHER,O.M.ANDERSEN,A.DIEHL, JRNL AUTH 2 P.SCHMIEDER,J.DU,B.C.HOLDENER,H.OSCHKINAT JRNL TITL THE STRUCTURE OF MESD45-184 BRINGS LIGHT INTO THE MECHANISM JRNL TITL 2 OF LDLR FAMILY FOLDING JRNL REF STRUCTURE V. 19 337 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21397185 JRNL DOI 10.1016/J.STR.2010.12.022 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CNS 1.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES, READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RQM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000150168. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM [U-100% 13C; U-100% 15N] REMARK 210 MESD, 20MM SODIUM PHOSPHATE, REMARK 210 50MM SODIUM CHLORIDE, 0.02% REMARK 210 SODIUM AZIDE, 0.1MM EDTA, 100% REMARK 210 D2O; 1MM [U-100% 13C; U-100% 15N] REMARK 210 MESD, 20MM SODIUM PHOSPHATE, REMARK 210 50MM SODIUM CHLORIDE, 0.02% REMARK 210 SODIUM AZIDE, 0.1MM EDTA, 90% REMARK 210 H2O/10% D2O; 1MM [U-100% 15N] REMARK 210 MESD, 20MM SODIUM PHOSPHATE, REMARK 210 50MM SODIUM CHLORIDE, 0.02% REMARK 210 SODIUM AZIDE, 0.1MM EDTA, 90% REMARK 210 H2O/10% D2O; 1MM [U-100% 15N] REMARK 210 MESD, 20MM SODIUM PHOSPHATE, REMARK 210 50MM SODIUM CHLORIDE, 0.02% REMARK 210 SODIUM AZIDE, 0.1MM EDTA, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D CBCANNH; 3D REMARK 210 HNCO; 3D HNCACO; 3D HCCH-TOCSY; REMARK 210 3D HCCH-COSY; 3D H(CCCO)NH-TOCSY; REMARK 210 3D (H)CC(CO)NH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 2D 1H- REMARK 210 15N HSQC COUPLED; 2D 1H-15N HSQC REMARK 210 15N_T1-EDITED; 2D 1H-15N HSQC REMARK 210 15N_T2-EDITED REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : AV; DRX; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, SPARKY 3.10, REMARK 210 TOPSPIN 2.0, CYANA 2.0, X-PLOR REMARK 210 NIH 2.14 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 45 91.06 58.33 REMARK 500 1 SER A 69 -70.02 -77.91 REMARK 500 1 ASP A 111 -169.61 -115.23 REMARK 500 1 CYS A 128 -60.68 71.00 REMARK 500 1 ALA A 129 161.82 71.60 REMARK 500 2 ASP A 2 -95.05 -125.29 REMARK 500 2 ILE A 3 -75.55 -77.49 REMARK 500 2 ASN A 7 -70.87 -55.68 REMARK 500 2 PRO A 30 -159.43 -82.99 REMARK 500 2 ARG A 34 106.09 -49.34 REMARK 500 2 ASP A 45 90.38 56.81 REMARK 500 2 THR A 56 99.06 -68.76 REMARK 500 2 VAL A 68 -60.85 -101.28 REMARK 500 2 THR A 73 90.65 -63.08 REMARK 500 2 GLU A 134 87.48 -64.55 REMARK 500 2 MET A 137 91.52 -59.89 REMARK 500 3 ASP A 2 -74.42 67.93 REMARK 500 3 ASN A 7 -73.17 -56.01 REMARK 500 3 ASP A 45 78.80 56.47 REMARK 500 3 VAL A 68 -61.16 -101.10 REMARK 500 3 THR A 73 99.88 -62.14 REMARK 500 3 MET A 137 90.52 51.14 REMARK 500 4 ASP A 2 -89.12 -151.86 REMARK 500 4 ALA A 9 -74.62 -52.59 REMARK 500 4 PRO A 30 33.16 -73.28 REMARK 500 4 ASP A 45 91.57 54.29 REMARK 500 4 VAL A 68 -61.38 -102.15 REMARK 500 4 CYS A 128 138.39 166.68 REMARK 500 5 ASP A 8 -72.40 -50.22 REMARK 500 5 GLU A 16 -4.43 -58.98 REMARK 500 5 ASP A 45 91.62 64.51 REMARK 500 5 THR A 73 97.07 -59.30 REMARK 500 5 ASP A 94 82.49 -65.27 REMARK 500 5 CYS A 128 -67.00 69.60 REMARK 500 5 ALA A 129 119.75 71.67 REMARK 500 5 GLN A 136 82.58 -64.46 REMARK 500 5 TYR A 138 -51.56 179.21 REMARK 500 5 PRO A 139 4.34 -68.18 REMARK 500 6 ILE A 3 -30.79 -132.72 REMARK 500 6 GLN A 17 -73.64 -52.55 REMARK 500 6 PRO A 30 99.73 -65.85 REMARK 500 6 PRO A 38 48.84 -78.69 REMARK 500 6 ASP A 45 90.65 66.91 REMARK 500 6 PRO A 49 -72.74 -78.14 REMARK 500 6 ASP A 94 103.56 64.12 REMARK 500 6 ALA A 129 98.99 -61.86 REMARK 500 6 MET A 137 98.31 -168.18 REMARK 500 6 PRO A 139 84.85 -63.52 REMARK 500 7 PRO A 30 81.43 -48.62 REMARK 500 7 ASP A 45 79.78 60.10 REMARK 500 REMARK 500 THIS ENTRY HAS 176 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RQK RELATED DB: PDB REMARK 900 NMR SOLUTION STRUCTURE OF MESODERM DEVELOPMENT (MESD) - CLOSED REMARK 900 CONFORMATION DBREF 2RQM A 2 141 UNP Q9ERE7 MESD2_MOUSE 45 184 SEQADV 2RQM GLY A 1 UNP Q9ERE7 EXPRESSION TAG SEQRES 1 A 141 GLY ASP ILE ARG ASP TYR ASN ASP ALA ASP MET ALA ARG SEQRES 2 A 141 LEU LEU GLU GLN TRP GLU LYS ASP ASP ASP ILE GLU GLU SEQRES 3 A 141 GLY ASP LEU PRO GLU HIS LYS ARG PRO SER ALA PRO ILE SEQRES 4 A 141 ASP PHE SER LYS LEU ASP PRO GLY LYS PRO GLU SER ILE SEQRES 5 A 141 LEU LYS MET THR LYS LYS GLY LYS THR LEU MET MET PHE SEQRES 6 A 141 VAL THR VAL SER GLY ASN PRO THR GLU LYS GLU THR GLU SEQRES 7 A 141 GLU ILE THR SER LEU TRP GLN GLY SER LEU PHE ASN ALA SEQRES 8 A 141 ASN TYR ASP VAL GLN ARG PHE ILE VAL GLY SER ASP ARG SEQRES 9 A 141 ALA ILE PHE MET LEU ARG ASP GLY SER TYR ALA TRP GLU SEQRES 10 A 141 ILE LYS ASP PHE LEU VAL SER GLN ASP ARG CYS ALA GLU SEQRES 11 A 141 VAL THR LEU GLU GLY GLN MET TYR PRO GLY LYS HELIX 1 1 ILE A 3 GLU A 26 1 24 HELIX 2 2 ILE A 39 ASP A 45 1 7 HELIX 3 3 PRO A 49 THR A 56 1 8 HELIX 4 4 THR A 73 ALA A 91 1 19 HELIX 5 5 TYR A 114 SER A 124 1 11 SHEET 1 A 4 GLN A 96 ILE A 99 0 SHEET 2 A 4 ARG A 104 MET A 108 -1 O MET A 108 N GLN A 96 SHEET 3 A 4 MET A 63 THR A 67 -1 N VAL A 66 O ALA A 105 SHEET 4 A 4 GLU A 130 LEU A 133 -1 O GLU A 130 N THR A 67 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1