HEADER GENE REGULATION 25-MAY-10 2RR6 TITLE SOLUTION STRUCTURE OF THE LEUCINE RICH REPEAT OF HUMAN ACIDIC LEUCINE- TITLE 2 RICH NUCLEAR PHOSPHOPROTEIN 32 FAMILY MEMBER B COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32 FAMILY MEMBER COMPND 3 B; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES IN UNP 1-161; COMPND 6 SYNONYM: ACIDIC PROTEIN RICH IN LEUCINES, PUTATIVE HLA-DR-ASSOCIATED COMPND 7 PROTEIN I-2, PHAPI2, SILVER-STAINABLE PROTEIN SSP29; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ANP32B; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: P060227-01 KEYWDS PHAPI2 PROTEIN, SILVER-STAINABLE PROTEIN SSP29, ACIDIC PROTEIN RICH KEYWDS 2 IN LEUCINES, GENE REGULATION, RDC EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.TOCHIO,T.UMEHARA,K.TSUDA,S.KOSHIBA,T.HARADA,S.WATANABE,A.TANAKA, AUTHOR 2 T.KIGAWA,S.YOKOYAMA REVDAT 4 01-MAY-24 2RR6 1 REMARK SEQADV REVDAT 3 25-AUG-10 2RR6 1 JRNL REVDAT 2 16-JUN-10 2RR6 1 SOURCE REVDAT 1 09-JUN-10 2RR6 0 JRNL AUTH N.TOCHIO,T.UMEHARA,Y.MUNEMASA,T.SUZUKI,S.SATO,K.TSUDA, JRNL AUTH 2 S.KOSHIBA,T.KIGAWA,R.NAGAI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF HISTONE CHAPERONE ANP32B: INTERACTION JRNL TITL 2 WITH CORE HISTONES H3-H4 THROUGH ITS ACIDIC CONCAVE DOMAIN. JRNL REF J.MOL.BIOL. V. 401 97 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20538007 JRNL DOI 10.1016/J.JMB.2010.06.005 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLM REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RR6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000150187. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.3MM [U-13C; U-15N] PROTEIN-1, REMARK 210 20MM [U-2H] TRIS-2, 100MM SODIUM REMARK 210 CHLORIDE-3, 1MM [U-2H] DTT-4, REMARK 210 0.02 % SODIUM AZIDE-5, 90% H2O/ REMARK 210 10% D2O; 0.5MM [U-13C; U-15N] REMARK 210 PROTEIN-6, 20MM [U-2H] TRIS-7, REMARK 210 100MM SODIUM CHLORIDE-8, 1MM [U- REMARK 210 2H] DTT-9, 0.02 % SODIUM AZIDE- REMARK 210 10, 5 % C12E5/N-HEXANOL-11, 90% REMARK 210 H2O/10% D2O; 0.5MM [U-13C; U-15N] REMARK 210 PROTEIN-12, 20MM [U-2H] TRIS-13, REMARK 210 100MM SODIUM CHLORIDE-14, 1MM REMARK 210 [U-2H] DTT-15, 0.02 % SODIUM REMARK 210 AZIDE-16, 9 % POLYACRYLAMIDE GEL- REMARK 210 17, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 2D 1H-15N IPAP HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, XWINNMR, NMRPIPE, KUJIRA, REMARK 210 NMRVIEW REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 ARG A 139 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 2 ARG A 21 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 ARG A 27 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 3 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 4 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 4 ARG A 139 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 4 ARG A 157 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 5 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 5 ARG A 27 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 6 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 6 ARG A 27 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 6 ARG A 139 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 7 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 9 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 9 ARG A 27 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 9 ARG A 139 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 10 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 10 ARG A 157 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 11 ARG A 139 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 13 ARG A 139 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 14 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 14 ARG A 139 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 15 ARG A 139 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 16 ARG A 21 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 16 ARG A 157 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 17 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 17 ARG A 27 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 17 ARG A 139 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 17 ARG A 157 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 18 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 18 ARG A 157 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 19 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 19 ARG A 27 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 19 ARG A 139 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 19 ARG A 157 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 20 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 20 ARG A 27 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 20 ARG A 157 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 33 -5.88 57.93 REMARK 500 1 PHE A 48 37.57 -71.89 REMARK 500 1 LEU A 146 75.36 -119.47 REMARK 500 1 ASP A 166 -128.71 -136.19 REMARK 500 2 ASN A 33 12.92 58.25 REMARK 500 2 PHE A 48 33.09 -72.75 REMARK 500 2 LEU A 146 70.85 -112.21 REMARK 500 3 ARG A 19 -62.74 54.64 REMARK 500 3 ASN A 20 9.15 -154.87 REMARK 500 3 ASN A 33 14.56 55.75 REMARK 500 3 PHE A 48 32.71 -72.30 REMARK 500 3 ASN A 58 27.48 49.89 REMARK 500 3 LEU A 73 99.89 -63.07 REMARK 500 3 LEU A 146 76.23 -116.55 REMARK 500 3 PRO A 163 -169.24 -75.30 REMARK 500 3 ASP A 164 38.96 -78.98 REMARK 500 4 ASN A 33 -10.24 60.21 REMARK 500 4 PHE A 48 34.33 -71.84 REMARK 500 4 ASN A 129 14.58 57.72 REMARK 500 4 LEU A 146 70.85 -113.88 REMARK 500 4 ASP A 166 23.75 -142.23 REMARK 500 5 ARG A 19 -52.13 45.19 REMARK 500 5 ASN A 33 16.93 57.85 REMARK 500 5 PHE A 48 35.57 -72.95 REMARK 500 5 LEU A 146 75.99 -113.73 REMARK 500 6 ARG A 19 -53.69 48.52 REMARK 500 6 ASN A 33 13.36 58.35 REMARK 500 6 PHE A 48 33.52 -71.55 REMARK 500 6 LEU A 94 63.72 -119.45 REMARK 500 6 LYS A 106 30.76 -85.59 REMARK 500 6 LEU A 146 71.01 -114.02 REMARK 500 6 ASP A 166 -4.12 -140.69 REMARK 500 7 ARG A 19 -46.58 44.59 REMARK 500 7 ASN A 33 -0.79 59.25 REMARK 500 7 PHE A 48 33.16 -73.38 REMARK 500 7 SER A 165 -97.53 -97.88 REMARK 500 7 ASP A 166 -49.52 -155.99 REMARK 500 7 ALA A 167 160.40 59.03 REMARK 500 8 ARG A 19 -54.33 40.08 REMARK 500 8 PHE A 48 36.83 -71.46 REMARK 500 8 LEU A 127 14.82 -142.07 REMARK 500 8 LEU A 146 71.43 -114.62 REMARK 500 8 ASP A 166 -35.78 -135.08 REMARK 500 9 ASN A 33 11.69 59.02 REMARK 500 9 GLU A 42 -43.72 -133.24 REMARK 500 9 PHE A 48 33.75 -72.05 REMARK 500 9 LEU A 146 71.11 -113.41 REMARK 500 9 SER A 165 -5.46 64.85 REMARK 500 10 ASN A 33 13.00 59.79 REMARK 500 10 PHE A 48 33.65 -71.82 REMARK 500 REMARK 500 THIS ENTRY HAS 99 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 139 0.08 SIDE CHAIN REMARK 500 12 ARG A 13 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ELL RELATED DB: PDB REMARK 900 RELATED ID: 11083 RELATED DB: BMRB DBREF 2RR6 A 8 168 UNP Q92688 AN32B_HUMAN 1 161 SEQADV 2RR6 GLY A 1 UNP Q92688 EXPRESSION TAG SEQADV 2RR6 SER A 2 UNP Q92688 EXPRESSION TAG SEQADV 2RR6 SER A 3 UNP Q92688 EXPRESSION TAG SEQADV 2RR6 GLY A 4 UNP Q92688 EXPRESSION TAG SEQADV 2RR6 SER A 5 UNP Q92688 EXPRESSION TAG SEQADV 2RR6 SER A 6 UNP Q92688 EXPRESSION TAG SEQADV 2RR6 GLY A 7 UNP Q92688 EXPRESSION TAG SEQRES 1 A 168 GLY SER SER GLY SER SER GLY MET ASP MET LYS ARG ARG SEQRES 2 A 168 ILE HIS LEU GLU LEU ARG ASN ARG THR PRO ALA ALA VAL SEQRES 3 A 168 ARG GLU LEU VAL LEU ASP ASN CYS LYS SER ASN ASP GLY SEQRES 4 A 168 LYS ILE GLU GLY LEU THR ALA GLU PHE VAL ASN LEU GLU SEQRES 5 A 168 PHE LEU SER LEU ILE ASN VAL GLY LEU ILE SER VAL SER SEQRES 6 A 168 ASN LEU PRO LYS LEU PRO LYS LEU LYS LYS LEU GLU LEU SEQRES 7 A 168 SER GLU ASN ARG ILE PHE GLY GLY LEU ASP MET LEU ALA SEQRES 8 A 168 GLU LYS LEU PRO ASN LEU THR HIS LEU ASN LEU SER GLY SEQRES 9 A 168 ASN LYS LEU LYS ASP ILE SER THR LEU GLU PRO LEU LYS SEQRES 10 A 168 LYS LEU GLU CYS LEU LYS SER LEU ASP LEU PHE ASN CYS SEQRES 11 A 168 GLU VAL THR ASN LEU ASN ASP TYR ARG GLU SER VAL PHE SEQRES 12 A 168 LYS LEU LEU PRO GLN LEU THR TYR LEU ASP GLY TYR ASP SEQRES 13 A 168 ARG GLU ASP GLN GLU ALA PRO ASP SER ASP ALA GLU HELIX 1 1 ASP A 9 ARG A 19 1 11 HELIX 2 2 THR A 22 VAL A 26 5 5 HELIX 3 3 LEU A 87 LEU A 94 1 8 HELIX 4 4 ASP A 109 LEU A 119 5 11 HELIX 5 5 CYS A 130 LEU A 135 5 6 HELIX 6 6 ASP A 137 LEU A 146 1 10 SHEET 1 A 7 GLU A 28 VAL A 30 0 SHEET 2 A 7 PHE A 53 SER A 55 1 O SER A 55 N LEU A 29 SHEET 3 A 7 LYS A 75 GLU A 77 1 O GLU A 77 N LEU A 54 SHEET 4 A 7 HIS A 99 ASN A 101 1 O ASN A 101 N LEU A 76 SHEET 5 A 7 SER A 124 ASP A 126 1 O SER A 124 N LEU A 100 SHEET 6 A 7 TYR A 151 LEU A 152 1 O TYR A 151 N LEU A 125 SHEET 7 A 7 TYR A 155 ASP A 156 -1 O TYR A 155 N LEU A 152 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1