HEADER RNA BINDING PROTEIN/RNA 27-JUN-11 2RS2 TITLE 1H, 13C, AND 15N CHEMICAL SHIFT ASSIGNMENTS FOR MUSASHI1 RBD1:R(GUAGU) TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN MUSASHI HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM 1 DOMAIN, UNP RESIDUES 20-103; COMPND 5 SYNONYM: MUSASHI-1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(*GP*UP*AP*GP*U)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MSI1, MSI1H; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: SYNTHETIC RNA KEYWDS MUSASHI, PROTEIN-RNA COMPLEX, RRM, RBD, RNA BINDING PROTEIN-RNA KEYWDS 2 COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.OHYAMA,T.NAGATA,K.TSUDA,T.IMAI,H.OKANO,T.YAMAZAKI,M.KATAHIRA REVDAT 2 01-MAY-24 2RS2 1 REMARK SEQADV REVDAT 1 28-DEC-11 2RS2 0 JRNL AUTH T.OHYAMA,T.NAGATA,K.TSUDA,N.KOBAYASHI,T.IMAI,H.OKANO, JRNL AUTH 2 T.YAMAZAKI,M.KATAHIRA JRNL TITL STRUCTURE OF MUSASHI1 IN A COMPLEX WITH TARGET RNA: THE ROLE JRNL TITL 2 OF AROMATIC STACKING INTERACTIONS JRNL REF NUCLEIC ACIDS RES. 2011 JRNL REFN ESSN 1362-4962 JRNL PMID 22140116 JRNL DOI 10.1093/NAR/GKR1139 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 9, AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLM (AMBER), CASE, DARDEN, REMARK 3 CHEATHAM, III, SIMMERLING, WANG, DUKE, LUO, ... REMARK 3 AND KOLLM (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RS2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000150218. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 300 UM [U-13C; U-15N] MSI1 RBD1 REMARK 210 -1, 300 UM RNA-2, 20 MM MES-3, 5 REMARK 210 MM DTT-4, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H TOCSY; 2D DQF-COSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HBHA(CO)NH; 3D REMARK 210 HCCH-TOCSY; 3D HN(CO)CA; 2D 13C- REMARK 210 15N [F1,F2]-FILTERED NOESY; 2D REMARK 210 13C-15N [F2]-FILTERED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 GLY A 7 REMARK 465 LEU A 8 REMARK 465 VAL A 9 REMARK 465 PRO A 10 REMARK 465 ARG A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 HIS A 14 REMARK 465 MET A 15 REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 GLY A 19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 82 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 1 A B 106 C4 - C5 - C6 ANGL. DEV. = -3.3 DEGREES REMARK 500 1 A B 106 C5 - C6 - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 A B 106 N1 - C6 - N6 ANGL. DEV. = -5.5 DEGREES REMARK 500 1 G B 107 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 2 A B 106 C4 - C5 - C6 ANGL. DEV. = -3.5 DEGREES REMARK 500 2 A B 106 C5 - C6 - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 2 A B 106 N1 - C6 - N6 ANGL. DEV. = -5.6 DEGREES REMARK 500 2 G B 107 O4' - C1' - N9 ANGL. DEV. = 6.0 DEGREES REMARK 500 3 ARG A 61 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 3 ARG A 82 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 A B 106 C4 - C5 - C6 ANGL. DEV. = -3.2 DEGREES REMARK 500 3 A B 106 C5 - C6 - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 3 A B 106 N1 - C6 - N6 ANGL. DEV. = -5.2 DEGREES REMARK 500 3 G B 107 O4' - C1' - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 4 A B 106 C4 - C5 - C6 ANGL. DEV. = -3.4 DEGREES REMARK 500 4 A B 106 C5 - C6 - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 4 A B 106 N1 - C6 - N6 ANGL. DEV. = -5.6 DEGREES REMARK 500 4 G B 107 O4' - C1' - N9 ANGL. DEV. = 5.8 DEGREES REMARK 500 5 A B 106 C4 - C5 - C6 ANGL. DEV. = -3.4 DEGREES REMARK 500 5 A B 106 C5 - C6 - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 5 A B 106 N1 - C6 - N6 ANGL. DEV. = -5.6 DEGREES REMARK 500 5 G B 107 O4' - C1' - N9 ANGL. DEV. = 5.1 DEGREES REMARK 500 6 ARG A 59 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 6 A B 106 C4 - C5 - C6 ANGL. DEV. = -3.2 DEGREES REMARK 500 6 A B 106 C5 - C6 - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 6 A B 106 N1 - C6 - N6 ANGL. DEV. = -5.4 DEGREES REMARK 500 6 G B 107 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 7 A B 106 C4 - C5 - C6 ANGL. DEV. = -3.3 DEGREES REMARK 500 7 A B 106 C5 - C6 - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 7 A B 106 N1 - C6 - N6 ANGL. DEV. = -5.5 DEGREES REMARK 500 7 G B 107 O4' - C1' - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 8 A B 106 C4 - C5 - C6 ANGL. DEV. = -3.3 DEGREES REMARK 500 8 A B 106 C5 - C6 - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 8 A B 106 N1 - C6 - N6 ANGL. DEV. = -5.3 DEGREES REMARK 500 8 G B 107 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 9 A B 106 C4 - C5 - C6 ANGL. DEV. = -3.4 DEGREES REMARK 500 9 A B 106 C5 - C6 - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 9 A B 106 N1 - C6 - N6 ANGL. DEV. = -5.6 DEGREES REMARK 500 9 G B 107 O4' - C1' - N9 ANGL. DEV. = 6.3 DEGREES REMARK 500 10 ARG A 61 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 10 ARG A 82 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 10 A B 106 C4 - C5 - C6 ANGL. DEV. = -3.2 DEGREES REMARK 500 10 A B 106 C5 - C6 - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 10 A B 106 N1 - C6 - N6 ANGL. DEV. = -5.4 DEGREES REMARK 500 10 G B 107 O4' - C1' - N9 ANGL. DEV. = 5.6 DEGREES REMARK 500 11 A B 106 C4 - C5 - C6 ANGL. DEV. = -3.4 DEGREES REMARK 500 11 A B 106 C5 - C6 - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 11 A B 106 N1 - C6 - N6 ANGL. DEV. = -5.4 DEGREES REMARK 500 11 G B 107 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 94 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 21 135.41 85.82 REMARK 500 2 MET A 52 54.83 -91.77 REMARK 500 3 MET A 52 49.29 -90.54 REMARK 500 4 LYS A 21 135.73 91.65 REMARK 500 4 MET A 52 43.62 -88.10 REMARK 500 5 LYS A 21 139.02 97.84 REMARK 500 5 MET A 52 47.33 -93.56 REMARK 500 6 ALA A 100 -167.94 60.23 REMARK 500 7 MET A 52 43.03 -90.83 REMARK 500 7 ALA A 100 -166.94 60.71 REMARK 500 8 MET A 52 44.60 -89.54 REMARK 500 9 LYS A 21 139.02 143.32 REMARK 500 10 TRP A 29 -7.38 -59.67 REMARK 500 11 MET A 52 42.49 -91.83 REMARK 500 12 GLU A 48 -85.02 -147.37 REMARK 500 12 CYS A 49 130.37 70.22 REMARK 500 12 MET A 52 49.11 -86.06 REMARK 500 13 GLU A 48 102.51 -168.16 REMARK 500 13 MET A 52 45.66 -93.96 REMARK 500 13 LYS A 58 -1.45 66.89 REMARK 500 14 LYS A 21 137.65 87.28 REMARK 500 14 MET A 52 46.40 -89.73 REMARK 500 15 MET A 52 44.90 -90.26 REMARK 500 16 LYS A 21 138.37 97.76 REMARK 500 16 GLU A 48 140.49 -170.93 REMARK 500 16 MET A 52 42.59 -95.46 REMARK 500 17 MET A 52 49.80 -88.73 REMARK 500 18 MET A 52 51.61 -92.32 REMARK 500 20 LYS A 21 136.63 92.30 REMARK 500 20 LYS A 58 -0.63 68.73 REMARK 500 20 ARG A 61 11.99 57.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 U B 108 0.07 SIDE CHAIN REMARK 500 11 ARG A 37 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11450 RELATED DB: BMRB DBREF 2RS2 A 20 103 UNP Q61474 MSI1H_MOUSE 20 103 DBREF 2RS2 B 104 108 PDB 2RS2 2RS2 104 108 SEQADV 2RS2 MET A -5 UNP Q61474 EXPRESSION TAG SEQADV 2RS2 GLY A -4 UNP Q61474 EXPRESSION TAG SEQADV 2RS2 SER A -3 UNP Q61474 EXPRESSION TAG SEQADV 2RS2 SER A -2 UNP Q61474 EXPRESSION TAG SEQADV 2RS2 HIS A -1 UNP Q61474 EXPRESSION TAG SEQADV 2RS2 HIS A 0 UNP Q61474 EXPRESSION TAG SEQADV 2RS2 HIS A 1 UNP Q61474 EXPRESSION TAG SEQADV 2RS2 HIS A 2 UNP Q61474 EXPRESSION TAG SEQADV 2RS2 HIS A 3 UNP Q61474 EXPRESSION TAG SEQADV 2RS2 HIS A 4 UNP Q61474 EXPRESSION TAG SEQADV 2RS2 SER A 5 UNP Q61474 EXPRESSION TAG SEQADV 2RS2 SER A 6 UNP Q61474 EXPRESSION TAG SEQADV 2RS2 GLY A 7 UNP Q61474 EXPRESSION TAG SEQADV 2RS2 LEU A 8 UNP Q61474 EXPRESSION TAG SEQADV 2RS2 VAL A 9 UNP Q61474 EXPRESSION TAG SEQADV 2RS2 PRO A 10 UNP Q61474 EXPRESSION TAG SEQADV 2RS2 ARG A 11 UNP Q61474 EXPRESSION TAG SEQADV 2RS2 GLY A 12 UNP Q61474 EXPRESSION TAG SEQADV 2RS2 SER A 13 UNP Q61474 EXPRESSION TAG SEQADV 2RS2 HIS A 14 UNP Q61474 EXPRESSION TAG SEQADV 2RS2 MET A 15 UNP Q61474 EXPRESSION TAG SEQADV 2RS2 GLY A 16 UNP Q61474 EXPRESSION TAG SEQADV 2RS2 SER A 17 UNP Q61474 EXPRESSION TAG SEQADV 2RS2 SER A 18 UNP Q61474 EXPRESSION TAG SEQADV 2RS2 GLY A 19 UNP Q61474 EXPRESSION TAG SEQRES 1 A 109 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 109 LEU VAL PRO ARG GLY SER HIS MET GLY SER SER GLY CYS SEQRES 3 A 109 LYS MET PHE ILE GLY GLY LEU SER TRP GLN THR THR GLN SEQRES 4 A 109 GLU GLY LEU ARG GLU TYR PHE GLY GLN PHE GLY GLU VAL SEQRES 5 A 109 LYS GLU CYS LEU VAL MET ARG ASP PRO LEU THR LYS ARG SEQRES 6 A 109 SER ARG GLY PHE GLY PHE VAL THR PHE MET ASP GLN ALA SEQRES 7 A 109 GLY VAL ASP LYS VAL LEU ALA GLN SER ARG HIS GLU LEU SEQRES 8 A 109 ASP SER LYS THR ILE ASP PRO LYS VAL ALA PHE PRO ARG SEQRES 9 A 109 ARG ALA GLN PRO LYS SEQRES 1 B 5 G U A G U HELIX 1 1 THR A 32 GLY A 41 1 10 HELIX 2 2 ASP A 70 GLN A 80 1 11 SHEET 1 A 5 VAL A 46 VAL A 51 0 SHEET 2 A 5 GLY A 64 PHE A 68 -1 O THR A 67 N GLU A 48 SHEET 3 A 5 MET A 22 GLY A 25 -1 N ILE A 24 O GLY A 64 SHEET 4 A 5 LYS A 88 VAL A 94 -1 O ASP A 91 N GLY A 25 SHEET 5 A 5 HIS A 83 LEU A 85 -1 N LEU A 85 O LYS A 88 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1