HEADER    TRANSCRIPTION                           08-DEC-11   2RS9              
TITLE     SOLUTION STRUCTURE OF THE BROMODOMAIN OF HUMAN BRPF1 IN COMPLEX WITH  
TITLE    2 HISTONE H4K5AC PEPTIDE                                               
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: ACETYLATED LYSINE 5 OF PEPTIDE FROM HISTONE H4;            
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: H4K5AC;                                                     
COMPND   5 ENGINEERED: YES;                                                     
COMPND   6 MOL_ID: 2;                                                           
COMPND   7 MOLECULE: PEREGRIN;                                                  
COMPND   8 CHAIN: B;                                                            
COMPND   9 FRAGMENT: BROMODOMAIN, UNP RESIDUES 633-740;                         
COMPND  10 SYNONYM: BROMODOMAIN AND PHD FINGER-CONTAINING PROTEIN 1, PROTEIN    
COMPND  11 BR140;                                                               
COMPND  12 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 SYNTHETIC: YES;                                                      
SOURCE   3 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   4 ORGANISM_COMMON: HUMAN;                                              
SOURCE   5 ORGANISM_TAXID: 9606;                                                
SOURCE   6 MOL_ID: 2;                                                           
SOURCE   7 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   8 ORGANISM_COMMON: HUMAN;                                              
SOURCE   9 ORGANISM_TAXID: 9606;                                                
SOURCE  10 GENE: BRPF1, BR140;                                                  
SOURCE  11 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS                               
KEYWDS    HUMAN BRPF1 PROTEIN, BROMODOMAIN AND PHD FINGER-CONTAINING PROTEIN 1, 
KEYWDS   2 BR140 PROTEIN, TRANSCRIPTION ACTIVATOR, HISTONE, TRANSCRIPTION,      
KEYWDS   3 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL  
KEYWDS   4 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS        
KEYWDS   5 INITIATIVE, RSGI                                                     
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    X.QIN,T.NAGASHIMA,T.UMEHARA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL     
AUTHOR   2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)                                
REVDAT   5   09-OCT-24 2RS9    1       REMARK                                   
REVDAT   4   15-NOV-23 2RS9    1       ATOM                                     
REVDAT   3   14-JUN-23 2RS9    1       SEQADV                                   
REVDAT   2   16-OCT-19 2RS9    1       COMPND REMARK LINK                       
REVDAT   1   12-DEC-12 2RS9    0                                                
JRNL        AUTH   X.QIN,F.HAYASHI,S.YOKOYAMA                                   
JRNL        TITL   SITE-SPECIFIC HISTONE RECOGNITION BY THE BROMODOMAIN OF      
JRNL        TITL 2 BRPF1 AND THE ROLE IN MOZ/MORF HISTONE ACETYLTRANSFERASE     
JRNL        TITL 3 COMPLEXES                                                    
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : NMRPIPE 20100701, AMBER 5, CYANA                     
REMARK   3   AUTHORS     : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX    
REMARK   3                 (NMRPIPE), CASE, DARDEN, CHEATHAM, III, SIMMERLING,  
REMARK   3                 WANG, DUKE, LUO, ... AND KOLLM (AMBER)               
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2RS9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-DEC-11.                  
REMARK 100 THE DEPOSITION ID IS D_1000150223.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 288                                
REMARK 210  PH                             : 6.5                                
REMARK 210  IONIC STRENGTH                 : 100                                
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1.5 MM H4K5AC-1, 0.54 MM [U-99%    
REMARK 210                                   13C; U-99% 15N] BROMODOMAIN-2,     
REMARK 210                                   90% H2O/10% D2O                    
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D 1H-15N NOESY; 3D 1H-13C         
REMARK 210                                   NOESY; 13C-EDITED (F1); 13C/15N-   
REMARK 210                                   FILTERED (F3) 3D NOESY             
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ                            
REMARK 210  SPECTROMETER MODEL             : INOVA                              
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRVIEW 5.0.4, KUJIRA 0.9905,      
REMARK 210                                   CYANA 2.1                          
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS,            
REMARK 210                                   MOLECULAR DYNAMICS                 
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500 14 ARG B 148   NE  -  CZ  -  NH2 ANGL. DEV. =  -3.1 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 SER B  43     -166.92   -173.37                                   
REMARK 500  1 LYS B 125       20.56    -71.02                                   
REMARK 500  1 GLU B 138      -62.82    -90.31                                   
REMARK 500  1 SER B 156     -159.96     62.97                                   
REMARK 500  1 SER B 160      179.97     73.31                                   
REMARK 500  2 TYR B 102      -67.69    -92.39                                   
REMARK 500  2 ASP B 126       16.95   -148.21                                   
REMARK 500  3 ARG A   3      173.53     72.64                                   
REMARK 500  3 ASP B  63       79.79   -108.85                                   
REMARK 500  3 TYR B 122       63.00   -103.66                                   
REMARK 500  4 LYS A   8       75.47     59.78                                   
REMARK 500  4 SER B  42      -58.89     71.57                                   
REMARK 500  4 SER B  46      104.29   -168.02                                   
REMARK 500  4 TYR B 100       51.84     71.92                                   
REMARK 500  4 TYR B 102      -78.22    -83.38                                   
REMARK 500  4 LEU B 103       -0.68     67.29                                   
REMARK 500  4 ASN B 123     -167.88   -160.49                                   
REMARK 500  4 LYS B 125        2.22    -68.35                                   
REMARK 500  5 SER B  42      -40.94   -166.30                                   
REMARK 500  5 SER B  46      -76.22   -111.89                                   
REMARK 500  5 ASP B 126       16.18   -140.79                                   
REMARK 500  6 ASP B 126       24.98   -148.81                                   
REMARK 500  7 ASP B 126       18.33   -144.32                                   
REMARK 500  8 SER B  42      -51.72   -148.06                                   
REMARK 500  9 SER B  42       24.56   -149.29                                   
REMARK 500  9 GLU B 138      -66.87    -90.07                                   
REMARK 500  9 SER B 156      145.16     75.00                                   
REMARK 500 10 SER B  43      172.74     66.11                                   
REMARK 500 10 ASP B  63       78.67   -118.90                                   
REMARK 500 10 ASP B 126       19.12   -150.18                                   
REMARK 500 11 SER B  45      112.29     60.53                                   
REMARK 500 11 ASP B 126       11.25   -144.37                                   
REMARK 500 11 SER B 156      144.18     74.60                                   
REMARK 500 12 SER B  42      108.91     72.38                                   
REMARK 500 12 SER B  46       31.92   -149.10                                   
REMARK 500 12 TYR B 102      -71.38    -82.86                                   
REMARK 500 12 LEU B 103       -2.05     66.26                                   
REMARK 500 12 ASN B 123     -166.27   -173.75                                   
REMARK 500 13 LYS A   8     -140.50     64.63                                   
REMARK 500 13 SER B  42     -166.55   -165.64                                   
REMARK 500 13 ASP B 126       17.03   -147.05                                   
REMARK 500 13 SER B 160      163.88     67.09                                   
REMARK 500 14 LYS A   8      -32.24   -161.49                                   
REMARK 500 14 VAL B  77       78.24   -150.72                                   
REMARK 500 14 TYR B 122       81.09   -150.70                                   
REMARK 500 14 ASP B 126       16.94   -143.59                                   
REMARK 500 14 GLU B 138      -64.19    -91.40                                   
REMARK 500 14 SER B 159      -49.15   -170.96                                   
REMARK 500 15 SER B  42      -52.59   -134.83                                   
REMARK 500 15 SER B  46      -74.41    -74.71                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS      68 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 2D9E   RELATED DB: PDB                                   
REMARK 900 BROMODOMAIN IN FREE STATE                                            
REMARK 900 RELATED ID: 11463   RELATED DB: BMRB                                 
DBREF  2RS9 A    1    10  UNP    P62805   H4_HUMAN         2     11             
DBREF  2RS9 B   48   155  UNP    P55201   BRPF1_HUMAN    633    740             
SEQADV 2RS9 GLY B   41  UNP  P55201              EXPRESSION TAG                 
SEQADV 2RS9 SER B   42  UNP  P55201              EXPRESSION TAG                 
SEQADV 2RS9 SER B   43  UNP  P55201              EXPRESSION TAG                 
SEQADV 2RS9 GLY B   44  UNP  P55201              EXPRESSION TAG                 
SEQADV 2RS9 SER B   45  UNP  P55201              EXPRESSION TAG                 
SEQADV 2RS9 SER B   46  UNP  P55201              EXPRESSION TAG                 
SEQADV 2RS9 GLY B   47  UNP  P55201              EXPRESSION TAG                 
SEQADV 2RS9 SER B  156  UNP  P55201              EXPRESSION TAG                 
SEQADV 2RS9 GLY B  157  UNP  P55201              EXPRESSION TAG                 
SEQADV 2RS9 PRO B  158  UNP  P55201              EXPRESSION TAG                 
SEQADV 2RS9 SER B  159  UNP  P55201              EXPRESSION TAG                 
SEQADV 2RS9 SER B  160  UNP  P55201              EXPRESSION TAG                 
SEQADV 2RS9 GLY B  161  UNP  P55201              EXPRESSION TAG                 
SEQRES   1 A   10  SER GLY ARG GLY ALY GLY GLY LYS GLY LEU                      
SEQRES   1 B  121  GLY SER SER GLY SER SER GLY PHE LEU ILE LEU LEU ARG          
SEQRES   2 B  121  LYS THR LEU GLU GLN LEU GLN GLU LYS ASP THR GLY ASN          
SEQRES   3 B  121  ILE PHE SER GLU PRO VAL PRO LEU SER GLU VAL PRO ASP          
SEQRES   4 B  121  TYR LEU ASP HIS ILE LYS LYS PRO MET ASP PHE PHE THR          
SEQRES   5 B  121  MET LYS GLN ASN LEU GLU ALA TYR ARG TYR LEU ASN PHE          
SEQRES   6 B  121  ASP ASP PHE GLU GLU ASP PHE ASN LEU ILE VAL SER ASN          
SEQRES   7 B  121  CYS LEU LYS TYR ASN ALA LYS ASP THR ILE PHE TYR ARG          
SEQRES   8 B  121  ALA ALA VAL ARG LEU ARG GLU GLN GLY GLY ALA VAL LEU          
SEQRES   9 B  121  ARG GLN ALA ARG ARG GLN ALA GLU LYS MET GLY SER GLY          
SEQRES  10 B  121  PRO SER SER GLY                                              
MODRES 2RS9 ALY A    5  LYS  N(6)-ACETYLLYSINE                                  
HET    ALY  A   5      26                                                       
HETNAM     ALY N(6)-ACETYLLYSINE                                                
FORMUL   1  ALY    C8 H16 N2 O3                                                 
HELIX    1   1 SER B   46  GLN B   60  1                                  15    
HELIX    2   2 GLU B   61  ASP B   63  5                                   3    
HELIX    3   3 PRO B   73  VAL B   77  5                                   5    
HELIX    4   4 ASP B   79  ILE B   84  1                                   6    
HELIX    5   5 ASP B   89  ALA B   99  1                                  11    
HELIX    6   6 ASN B  104  LYS B  121  1                                  18    
HELIX    7   7 THR B  127  SER B  156  1                                  30    
LINK         C   GLY A   4                 N   ALY A   5     1555   1555  1.34  
LINK         C   ALY A   5                 N   GLY A   6     1555   1555  1.34  
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1