HEADER METAL BINDING PROTEIN 15-MAY-12 2RSQ TITLE COPPER(I) LOADED FORM OF THE FIRST DOMAIN OF THE HUMAN COPPER TITLE 2 CHAPERONE FOR SOD1, CCS COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER CHAPERONE FOR SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-85; COMPND 5 SYNONYM: SUPEROXIDE DISMUTASE COPPER CHAPERONE, D1CCS; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CCS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PDEST-HIS-MPB KEYWDS COPPER CHAPERONE, HUMAN CCS, HUMAN SOD1, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.BANCI,I.BERTINI,F.CANTINI,T.KOZYREVA,J.T.RUBINO REVDAT 1 03-APR-13 2RSQ 0 JRNL AUTH L.BANCI,I.BERTINI,F.CANTINI,T.KOZYREVA,J.T.RUBINO JRNL TITL COPPER(I) LOADED FORM OF THE FIRST DOMAIN OF THE HUMAN JRNL TITL 2 COPPER CHAPERONE FOR SOD1, CCS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 10 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RSQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAY-12. REMARK 100 THE RCSB ID CODE IS RCSB150237. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 6; 6.0 REMARK 210 IONIC STRENGTH : 0.1 M NAPI, 0.1M NACL; 0.1 NAPI, REMARK 210 0.1 NACL REMARK 210 PRESSURE : AMBIENT; NULL REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 15N] D1CCS-1, 90% REMARK 210 H2O/10% D2O; 0.5 MM [U-99% 13C; U REMARK 210 -99% 15N] D1CCS-2, 90% H2O/10% REMARK 210 D2O; 0.5 MM D1CCS-3, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H NOESY; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.0, XEASY, CARA, CYANA REMARK 210 2.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 PHE A -1 REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 ASP A 4 REMARK 465 SER A 5 REMARK 465 GLY A 6 REMARK 465 ASN A 7 REMARK 465 GLN A 8 REMARK 465 SER A 80 REMARK 465 GLY A 81 REMARK 465 GLN A 82 REMARK 465 LEU A 83 REMARK 465 GLN A 84 REMARK 465 ASN A 85 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 71 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 2 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 2 ARG A 71 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 3 ARG A 71 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 4 ARG A 71 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 5 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 5 ARG A 71 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 6 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 7 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 7 ARG A 71 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 8 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 9 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 9 ARG A 71 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 10 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 10 ARG A 71 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 11 ARG A 71 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 12 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 13 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 14 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 16 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 16 ARG A 71 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 17 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 19 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 20 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 20 ARG A 71 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 THR A 21 7.44 -152.03 REMARK 500 3 THR A 21 -1.91 -150.93 REMARK 500 4 THR A 21 6.34 -150.59 REMARK 500 5 THR A 21 -16.53 -141.00 REMARK 500 7 THR A 21 0.81 -151.41 REMARK 500 9 GLN A 49 29.49 49.99 REMARK 500 10 THR A 21 -16.09 -150.57 REMARK 500 11 THR A 21 -36.20 -132.50 REMARK 500 13 THR A 21 -20.38 -150.29 REMARK 500 15 THR A 21 -15.01 -152.02 REMARK 500 15 HIS A 45 78.47 -119.98 REMARK 500 16 THR A 21 -5.98 -142.33 REMARK 500 17 THR A 21 -8.05 -145.66 REMARK 500 19 THR A 10 152.58 52.98 REMARK 500 20 THR A 10 150.71 56.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 ARG A 71 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CU1 A 101 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 22 SG REMARK 620 2 CYS A 25 SG 173.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU1 A 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CRL RELATED DB: PDB REMARK 900 APO FORM OF THE FIRST DOMAIN OF THE HUMAN COPPER CHAPERONE REMARK 900 FOR SOD1, CCS REMARK 900 RELATED ID: 11502 RELATED DB: BMRB DBREF 2RSQ A 1 85 UNP O14618 CCS_HUMAN 1 85 SEQADV 2RSQ GLY A -3 UNP O14618 EXPRESSION TAG SEQADV 2RSQ SER A -2 UNP O14618 EXPRESSION TAG SEQADV 2RSQ PHE A -1 UNP O14618 EXPRESSION TAG SEQADV 2RSQ THR A 0 UNP O14618 EXPRESSION TAG SEQRES 1 A 89 GLY SER PHE THR MET ALA SER ASP SER GLY ASN GLN GLY SEQRES 2 A 89 THR LEU CYS THR LEU GLU PHE ALA VAL GLN MET THR CYS SEQRES 3 A 89 GLN SER CYS VAL ASP ALA VAL ARG LYS SER LEU GLN GLY SEQRES 4 A 89 VAL ALA GLY VAL GLN ASP VAL GLU VAL HIS LEU GLU ASP SEQRES 5 A 89 GLN MET VAL LEU VAL HIS THR THR LEU PRO SER GLN GLU SEQRES 6 A 89 VAL GLN ALA LEU LEU GLU GLY THR GLY ARG GLN ALA VAL SEQRES 7 A 89 LEU LYS GLY MET GLY SER GLY GLN LEU GLN ASN HET CU1 A 101 1 HETNAM CU1 COPPER (I) ION FORMUL 2 CU1 CU 1+ HELIX 1 1 CYS A 22 GLN A 34 1 13 HELIX 2 2 PRO A 58 GLY A 68 1 11 SHEET 1 A 4 VAL A 39 HIS A 45 0 SHEET 2 A 4 MET A 50 THR A 55 -1 O LEU A 52 N GLU A 43 SHEET 3 A 4 CYS A 12 VAL A 18 -1 N PHE A 16 O VAL A 51 SHEET 4 A 4 ALA A 73 MET A 78 -1 O VAL A 74 N ALA A 17 LINK SG CYS A 22 CU CU1 A 101 1555 1555 2.21 LINK SG CYS A 25 CU CU1 A 101 1555 1555 2.22 SITE 1 AC1 2 CYS A 22 CYS A 25 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1