HEADER SUGAR BINDING PROTEIN 29-MAY-12 2RST TITLE NMR STRUCTURE OF THE C-TERMINAL DOMAIN OF EW29 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 29-KDA GALACTOSE-BINDING LECTIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, UNP RESIDUES 130-260; COMPND 5 SYNONYM: EW29, APP; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LUMBRICUS TERRESTRIS; SOURCE 3 ORGANISM_COMMON: COMMON EARTHWORM; SOURCE 4 ORGANISM_TAXID: 6398; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PCRII KEYWDS R-TYPE LECTIN, SUGAR BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.HEMMI REVDAT 3 15-MAY-24 2RST 1 REMARK REVDAT 2 14-JUN-23 2RST 1 REMARK SEQADV REVDAT 1 17-APR-13 2RST 0 JRNL AUTH H.HEMMI,A.KUNO,J.HIRABAYASHI JRNL TITL NMR STRUCTURE AND DYNAMICS OF THE C-TERMINAL DOMAIN OF JRNL TITL 2 R-TYPE LECTIN FROM THE EARTHWORM LUMBRICUS TERRESTRIS JRNL REF FEBS J. V. 280 70 2013 JRNL REFN ISSN 1742-464X JRNL PMID 23122331 JRNL DOI 10.1111/FEBS.12050 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.HEMMI,A.KUNO,S.ITO,R.SUZUKI,S.KANEKO,T.HASEGAWA, REMARK 1 AUTH 2 J.HIRABAYASHI,K.KASAI REMARK 1 TITL (1)H, (13)C, AND (15)N CHEMICAL SHIFT ASSIGNMENT OF THE REMARK 1 TITL 2 C-TERMINAL 15 KDA DOMAIN OF A NOVEL GALACTOSE-BINDING REMARK 1 TITL 3 PROTEIN FROM THE EARTHWORM LUMBRICUS TERRESTRIS REMARK 1 REF J.BIOMOL.NMR V. 30 377 2004 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 15756471 REMARK 1 DOI 10.1007/S10858-005-1845-6 REMARK 1 REFERENCE 2 REMARK 1 AUTH H.HEMMI,A.KUNO,S.ITO,R.SUZUKI,T.HASEGAWA,J.HIRABAYASHI REMARK 1 TITL NMR STUDIES ON THE INTERACTION OF SUGARS WITH THE C-TERMINAL REMARK 1 TITL 2 DOMAIN OF AN R-TYPE LECTIN FROM THE EARTHWORM LUMBRICUS REMARK 1 TITL 3 TERRESTRIS REMARK 1 REF FEBS J. V. 276 2095 2009 REMARK 1 REFN ISSN 1742-464X REMARK 1 PMID 19292877 REMARK 1 DOI 10.1111/J.1742-4658.2009.06944.X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CNS 1.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RST COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000150240. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.1 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 0.9 MM [U-15N; U-13C] C-TERMINAL REMARK 210 DOMAIN OF EW29-1, 90% H2O/10% REMARK 210 D2O; 0.9 MM [U-15N] C-TERMINAL REMARK 210 DOMAIN OF EW29-2, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D C(CO)NH; 3D HNCO; 3D HNCACB; REMARK 210 3D H(CCO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HNHA; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D HNHB; 3D HCCH-COSY; 2D REMARK 210 1H-1H NOESY; 2D 1H-15N IPAP REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 2000, SPARKY 3.100 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 3 -170.35 -68.00 REMARK 500 1 GLU A 20 95.87 -63.42 REMARK 500 1 ALA A 25 99.49 -45.51 REMARK 500 1 ASN A 59 178.67 177.91 REMARK 500 1 ASP A 60 84.00 -67.74 REMARK 500 1 ALA A 65 43.63 -97.28 REMARK 500 1 PRO A 80 24.57 -76.78 REMARK 500 1 LEU A 101 154.40 -47.09 REMARK 500 1 LYS A 105 -4.02 76.01 REMARK 500 1 SER A 131 108.12 -54.77 REMARK 500 2 GLN A 22 -168.69 61.48 REMARK 500 2 SER A 56 -178.36 -66.88 REMARK 500 2 ASN A 59 -9.15 85.43 REMARK 500 2 ASP A 60 53.54 -176.68 REMARK 500 2 ALA A 65 42.77 -96.83 REMARK 500 2 PRO A 80 20.42 -77.78 REMARK 500 2 LEU A 101 153.24 -45.96 REMARK 500 2 LYS A 105 -2.13 71.46 REMARK 500 3 GLU A 20 96.77 -40.51 REMARK 500 3 GLN A 22 -163.27 59.47 REMARK 500 3 ASN A 59 -171.15 178.34 REMARK 500 3 ALA A 65 39.62 -94.30 REMARK 500 3 PRO A 80 20.10 -77.27 REMARK 500 3 LEU A 101 154.21 -45.62 REMARK 500 3 LYS A 105 -9.03 80.88 REMARK 500 4 GLU A 20 96.13 -61.72 REMARK 500 4 ALA A 25 102.43 -43.35 REMARK 500 4 ASN A 59 -179.69 -179.36 REMARK 500 4 ALA A 65 43.49 -97.42 REMARK 500 4 PRO A 80 21.16 -76.66 REMARK 500 4 LEU A 101 155.19 -46.39 REMARK 500 4 LYS A 105 -20.81 82.43 REMARK 500 5 LYS A 2 126.21 63.59 REMARK 500 5 GLU A 20 96.00 -41.16 REMARK 500 5 GLN A 22 -74.31 65.74 REMARK 500 5 ASN A 23 92.52 59.80 REMARK 500 5 ASN A 59 -72.30 -171.24 REMARK 500 5 ASP A 60 81.89 -176.42 REMARK 500 5 ALA A 65 42.05 -95.07 REMARK 500 5 PRO A 80 21.28 -77.16 REMARK 500 5 LEU A 101 154.09 -46.26 REMARK 500 6 LYS A 4 151.35 -47.94 REMARK 500 6 GLU A 20 101.57 -41.85 REMARK 500 6 GLN A 22 -76.06 63.48 REMARK 500 6 ASN A 23 100.44 63.32 REMARK 500 6 ASN A 59 -169.82 174.74 REMARK 500 6 ALA A 65 42.37 -104.06 REMARK 500 6 ASP A 76 118.15 61.29 REMARK 500 6 LEU A 101 154.29 -46.06 REMARK 500 6 SER A 106 -139.18 45.69 REMARK 500 REMARK 500 THIS ENTRY HAS 187 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6226 RELATED DB: BMRB DBREF 2RST A 2 132 UNP O96048 O96048_LUMTE 130 260 SEQADV 2RST MET A 1 UNP O96048 EXPRESSION TAG SEQRES 1 A 132 MET LYS PRO LYS PHE PHE TYR ILE LYS SER GLU LEU ASN SEQRES 2 A 132 GLY LYS VAL LEU ASP ILE GLU GLY GLN ASN PRO ALA PRO SEQRES 3 A 132 GLY SER LYS ILE ILE THR TRP ASP GLN LYS LYS GLY PRO SEQRES 4 A 132 THR ALA VAL ASN GLN LEU TRP TYR THR ASP GLN GLN GLY SEQRES 5 A 132 VAL ILE ARG SER LYS LEU ASN ASP PHE ALA ILE ASP ALA SEQRES 6 A 132 SER HIS GLU GLN ILE GLU THR GLN PRO PHE ASP PRO ASN SEQRES 7 A 132 ASN PRO LYS ARG ALA TRP ILE VAL SER GLY ASN THR ILE SEQRES 8 A 132 ALA GLN LEU SER ASP ARG ASP ILE VAL LEU ASP ILE ILE SEQRES 9 A 132 LYS SER ASP LYS GLU ALA GLY ALA HIS ILE CYS ALA TRP SEQRES 10 A 132 LYS GLN HIS GLY GLY PRO ASN GLN LYS PHE ILE ILE GLU SEQRES 11 A 132 SER GLU HELIX 1 1 ALA A 41 ASN A 43 5 3 HELIX 2 2 LYS A 105 ASP A 107 5 3 HELIX 3 3 GLY A 122 GLN A 125 5 4 SHEET 1 A 4 ILE A 54 SER A 56 0 SHEET 2 A 4 LEU A 45 THR A 48 -1 N TYR A 47 O ARG A 55 SHEET 3 A 4 PHE A 5 SER A 10 -1 N PHE A 6 O TRP A 46 SHEET 4 A 4 PHE A 127 GLU A 130 -1 O ILE A 128 N LYS A 9 SHEET 1 B 4 VAL A 16 ILE A 19 0 SHEET 2 B 4 SER A 28 TRP A 33 -1 O ILE A 31 N ASP A 18 SHEET 3 B 4 GLU A 71 GLN A 73 -1 O THR A 72 N SER A 28 SHEET 4 B 4 ALA A 62 ASP A 64 -1 N ASP A 64 O GLU A 71 SHEET 1 C 2 TRP A 84 SER A 87 0 SHEET 2 C 2 THR A 90 GLN A 93 -1 O THR A 90 N SER A 87 SHEET 1 D 2 ILE A 99 ILE A 103 0 SHEET 2 D 2 ILE A 114 LYS A 118 -1 O TRP A 117 N VAL A 100 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1