HEADER METAL BINDING PROTEIN 05-JUL-13 2RT9 TITLE SOLUTION STRUCTURE OF A REGULATORY DOMAIN OF MEIOSIS INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: F-BOX ONLY PROTEIN 43; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 565-616; COMPND 5 SYNONYM: ENDOGENOUS MEIOTIC INHIBITOR 2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: FBXO43; SOURCE 6 EXPRESSION_SYSTEM: E. COLI CELL FREE PROTEIN SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PCR2.1 KEYWDS ZINC-FINGER DOMAIN, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.SHOJI,Y.MUTO,M.IKEDA,F.HE,K.TSUDA,N.OHSAWA,R.AKASAKA,T.TERADA, AUTHOR 2 M.WAKIYAMA,M.SHIROUZU,S.YOKOYAMA REVDAT 3 01-MAY-24 2RT9 1 REMARK SEQADV LINK REVDAT 2 21-JAN-15 2RT9 1 JRNL REVDAT 1 16-JUL-14 2RT9 0 JRNL AUTH S.SHOJI,Y.MUTO,M.IKEDA,F.HE,K.TSUDA,N.OHSAWA,R.AKASAKA, JRNL AUTH 2 T.TERADA,M.WAKIYAMA,M.SHIROUZU,S.YOKOYAMA JRNL TITL THE ZINC-BINDING REGION (ZBR) FRAGMENT OF EMI2 CAN INHIBIT JRNL TITL 2 APC/C BY TARGETING ITS ASSOCIATION WITH THE COACTIVATOR JRNL TITL 3 CDC20 AND UBE2C-MEDIATED UBIQUITYLATION JRNL REF FEBS OPEN BIO V. 4 689 2014 JRNL REFN ESSN 2211-5463 JRNL PMID 25161877 JRNL DOI 10.1016/J.FOB.2014.06.010 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, AMBER REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), CASE, DARDEN, CHEATHAM, REMARK 3 III, SIMMERLING, WANG, DUKE, LUO, ... AND KOLLMAN REMARK 3 (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RT9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000150256. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.47 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN-1, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW, KUJIRA, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 559 REMARK 465 SER A 560 REMARK 465 SER A 561 REMARK 465 GLY A 562 REMARK 465 SER A 563 REMARK 465 SER A 564 REMARK 465 GLY A 565 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 615 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 5 ARG A 615 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 7 ARG A 593 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 8 ARG A 593 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 10 ARG A 593 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 15 ARG A 575 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 15 ARG A 615 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 18 ARG A 593 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 567 164.00 61.64 REMARK 500 2 CYS A 596 -64.27 -109.06 REMARK 500 4 PRO A 579 90.12 -68.76 REMARK 500 4 LYS A 581 104.89 -58.22 REMARK 500 9 ARG A 615 27.32 -79.42 REMARK 500 13 CYS A 596 -62.09 -105.65 REMARK 500 15 PRO A 579 88.83 -68.89 REMARK 500 15 CYS A 596 -60.38 -97.07 REMARK 500 16 PRO A 579 93.35 -68.20 REMARK 500 16 CYS A 596 -61.33 -98.68 REMARK 500 17 CYS A 596 -62.55 -109.19 REMARK 500 20 LYS A 581 107.54 -58.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 608 0.09 SIDE CHAIN REMARK 500 2 TYR A 608 0.08 SIDE CHAIN REMARK 500 3 TYR A 608 0.10 SIDE CHAIN REMARK 500 4 TYR A 608 0.09 SIDE CHAIN REMARK 500 5 TYR A 608 0.10 SIDE CHAIN REMARK 500 6 TYR A 608 0.10 SIDE CHAIN REMARK 500 7 TYR A 608 0.09 SIDE CHAIN REMARK 500 8 TYR A 608 0.09 SIDE CHAIN REMARK 500 9 TYR A 608 0.10 SIDE CHAIN REMARK 500 10 TYR A 608 0.10 SIDE CHAIN REMARK 500 11 TYR A 608 0.09 SIDE CHAIN REMARK 500 12 TYR A 608 0.09 SIDE CHAIN REMARK 500 13 TYR A 608 0.10 SIDE CHAIN REMARK 500 14 TYR A 608 0.08 SIDE CHAIN REMARK 500 15 TYR A 608 0.10 SIDE CHAIN REMARK 500 16 TYR A 608 0.10 SIDE CHAIN REMARK 500 17 TYR A 608 0.09 SIDE CHAIN REMARK 500 18 TYR A 608 0.10 SIDE CHAIN REMARK 500 19 TYR A 608 0.09 SIDE CHAIN REMARK 500 20 TYR A 608 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 573 SG REMARK 620 2 CYS A 576 SG 109.1 REMARK 620 3 CYS A 591 SG 109.4 109.4 REMARK 620 4 CYS A 596 SG 109.6 109.6 109.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 601 SG REMARK 620 2 CYS A 604 SG 109.7 REMARK 620 3 HIS A 609 NE2 106.5 109.9 REMARK 620 4 CYS A 614 SG 113.0 110.8 106.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11529 RELATED DB: BMRB DBREF 2RT9 A 566 617 UNP Q8CDI2 FBX43_MOUSE 565 616 SEQADV 2RT9 GLY A 559 UNP Q8CDI2 EXPRESSION TAG SEQADV 2RT9 SER A 560 UNP Q8CDI2 EXPRESSION TAG SEQADV 2RT9 SER A 561 UNP Q8CDI2 EXPRESSION TAG SEQADV 2RT9 GLY A 562 UNP Q8CDI2 EXPRESSION TAG SEQADV 2RT9 SER A 563 UNP Q8CDI2 EXPRESSION TAG SEQADV 2RT9 SER A 564 UNP Q8CDI2 EXPRESSION TAG SEQADV 2RT9 GLY A 565 UNP Q8CDI2 EXPRESSION TAG SEQRES 1 A 59 GLY SER SER GLY SER SER GLY THR ASP GLU ALA LEU LYS SEQRES 2 A 59 PRO CYS PRO ARG CYS GLN SER PRO ALA LYS TYR GLN PRO SEQRES 3 A 59 HIS LYS LYS ARG GLY LEU CYS SER ARG LEU ALA CYS GLY SEQRES 4 A 59 PHE ASP PHE CYS VAL LEU CYS LEU CYS ALA TYR HIS GLY SEQRES 5 A 59 SER GLU ASP CYS ARG ARG GLY HET ZN A 701 1 HET ZN A 702 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) SHEET 1 A 3 LYS A 581 GLN A 583 0 SHEET 2 A 3 ARG A 588 LEU A 590 -1 O LEU A 590 N LYS A 581 SHEET 3 A 3 ASP A 599 CYS A 601 -1 O PHE A 600 N GLY A 589 LINK SG CYS A 573 ZN ZN A 701 1555 1555 2.18 LINK SG CYS A 576 ZN ZN A 701 1555 1555 2.18 LINK SG CYS A 591 ZN ZN A 701 1555 1555 2.18 LINK SG CYS A 596 ZN ZN A 701 1555 1555 2.17 LINK SG CYS A 601 ZN ZN A 702 1555 1555 2.18 LINK SG CYS A 604 ZN ZN A 702 1555 1555 2.17 LINK NE2 HIS A 609 ZN ZN A 702 1555 1555 1.96 LINK SG CYS A 614 ZN ZN A 702 1555 1555 2.17 SITE 1 AC1 4 CYS A 573 CYS A 576 CYS A 591 CYS A 596 SITE 1 AC2 4 CYS A 601 CYS A 604 HIS A 609 CYS A 614 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1