HEADER DE NOVO PROTEIN 22-NOV-13 2RU4 TITLE DESIGNED ARMADILLO REPEAT PROTEIN SELF-ASSEMBLED COMPLEX (YIIM2-MAII) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARMADILLO REPEAT PROTEIN, N-TERMINAL FRAGMENT, YIIM2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ARMADILLO REPEAT PROTEIN, C-TERMINAL FRAGMENT, MAII; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PLIC_CR; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PLIC_CR KEYWDS SOLENOID REPEAT, ARMADILLO REPEAT MOTIF, DE NOVO PROTEIN, SELF- KEYWDS 2 ASSEMBLY, SOLUTION COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR O.ZERBE,M.T.CHRISTEN,A.PLUECKTHUN,R.P.WATSON REVDAT 3 15-MAY-24 2RU4 1 REMARK REVDAT 2 14-JUN-23 2RU4 1 REMARK REVDAT 1 23-JUL-14 2RU4 0 JRNL AUTH R.P.WATSON,M.T.CHRISTEN,C.EWALD,F.BUMBAK,C.REICHEN, JRNL AUTH 2 M.MIHAJLOVIC,E.SCHMIDT,P.GUNTERT,A.CAFLISCH,A.PLUCKTHUN, JRNL AUTH 3 O.ZERBE JRNL TITL SPONTANEOUS SELF-ASSEMBLY OF ENGINEERED ARMADILLO REPEAT JRNL TITL 2 PROTEIN FRAGMENTS INTO A FOLDED STRUCTURE JRNL REF STRUCTURE V. 22 985 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 24931467 JRNL DOI 10.1016/J.STR.2014.05.002 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.1, X-PLOR NIH 2.32, CYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE CALCULATION IN VACUO, REMARK 3 REFINEMENT IN EXPLICIT TIP3P WATER REMARK 4 REMARK 4 2RU4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000150269. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-13C; U-15N] YM2-1, 1.5 REMARK 210 MM MA-2, 150 MM SODIUM PHOSPHATE- REMARK 210 3, 150 MM SODIUM CHLORIDE-4, 2 % REMARK 210 GLYCEROL-5, 1 MM TMSP-6, 0.02 % REMARK 210 SODIUM AZIDE-7, 90% H2O/10% D2O; REMARK 210 0.75 MM [U-13C; U-15N] MA-8, REMARK 210 0.90 MM YM2-9, 150 MM SODIUM REMARK 210 PHOSPHATE-10, 150 MM SODIUM REMARK 210 CHLORIDE-11, 2 % GLYCEROL-12, 1 REMARK 210 MM TMSP-13, 0.02 % SODIUM AZIDE- REMARK 210 14, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D HNCO; 3D HNCACO; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 H(CCO)NH; 3D C(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 4D HCCH- REMARK 210 TOCSY; 3D-13C EDITED/FILTERED REMARK 210 NOESY; 3D-13C-EDITED/FILTERED REMARK 210 NOESY; 3D-15N-EDITED/FILTERED REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DIRECT DRIVE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, CARA 1.8.4, CCPNMR REMARK 210 2.3.1, UNIO 2.0.2, CYANA 3.96A, REMARK 210 TALOS-N 4.01 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: CHAINS A AND B ARE NOT COVALENTLY LINKED. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C GLY A 115 N GLY B 116 1.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 PRO A 88 N - CA - CB ANGL. DEV. = -7.3 DEGREES REMARK 500 3 PRO A 88 N - CA - CB ANGL. DEV. = -7.7 DEGREES REMARK 500 5 PRO A 88 N - CA - CB ANGL. DEV. = -7.6 DEGREES REMARK 500 9 PRO A 88 N - CA - CB ANGL. DEV. = -7.4 DEGREES REMARK 500 10 PRO A 88 N - CA - CB ANGL. DEV. = -7.8 DEGREES REMARK 500 11 PRO A 88 N - CA - CB ANGL. DEV. = -7.3 DEGREES REMARK 500 16 PRO A 88 N - CA - CB ANGL. DEV. = -7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 16 74.98 -115.15 REMARK 500 1 THR A 22 82.88 54.51 REMARK 500 1 ARG A 23 150.12 77.78 REMARK 500 1 ASP A 31 110.15 69.27 REMARK 500 1 ILE A 40 -67.22 73.29 REMARK 500 1 ASP A 41 161.70 74.71 REMARK 500 1 ASN B 117 -65.80 -120.37 REMARK 500 2 GLU A 2 -179.17 -170.79 REMARK 500 2 LEU A 3 78.34 62.26 REMARK 500 2 SER A 12 31.47 -157.88 REMARK 500 2 ASP A 14 -70.22 -176.71 REMARK 500 2 THR A 22 11.55 -159.03 REMARK 500 2 GLN A 27 -71.98 -102.62 REMARK 500 2 ASP A 31 -44.47 85.70 REMARK 500 2 ASN B 117 -65.15 -98.85 REMARK 500 2 ASN B 159 -46.21 70.85 REMARK 500 2 GLU B 181 82.30 -69.17 REMARK 500 2 ASN B 182 105.52 -176.17 REMARK 500 3 GLU A 2 143.76 71.85 REMARK 500 3 PRO A 4 83.17 -66.30 REMARK 500 3 LEU A 10 -137.41 -85.55 REMARK 500 3 MET A 15 -81.56 -80.63 REMARK 500 3 GLN A 16 164.99 168.07 REMARK 500 3 LYS A 24 71.20 69.08 REMARK 500 3 ILE A 28 91.64 68.81 REMARK 500 3 ASP A 31 -171.78 171.71 REMARK 500 3 ASN B 182 106.25 -168.07 REMARK 500 3 SER B 198 162.07 86.21 REMARK 500 4 ASN A 11 75.15 -108.17 REMARK 500 4 THR A 22 -79.33 -62.44 REMARK 500 4 ASP A 31 -138.91 47.67 REMARK 500 4 ASN A 33 -79.36 62.71 REMARK 500 4 ILE A 40 -30.90 168.01 REMARK 500 4 ASP A 41 139.54 82.84 REMARK 500 4 PRO A 55 68.67 -60.85 REMARK 500 4 ASN B 182 101.16 -165.24 REMARK 500 5 LEU A 10 -29.44 -171.05 REMARK 500 5 ASN A 11 121.08 73.11 REMARK 500 5 ASP A 31 74.64 46.88 REMARK 500 5 ASN A 33 -50.18 70.61 REMARK 500 5 PRO A 55 34.09 -72.59 REMARK 500 5 PRO A 88 -36.21 -39.51 REMARK 500 5 GLU B 181 -78.10 32.68 REMARK 500 5 SER B 198 -159.88 -111.96 REMARK 500 6 THR A 7 128.01 -174.80 REMARK 500 6 ASN A 11 50.37 -158.45 REMARK 500 6 LEU A 19 141.78 72.64 REMARK 500 6 ALA A 21 -89.70 57.62 REMARK 500 6 THR A 22 121.00 66.45 REMARK 500 6 ASP A 31 -85.34 -152.73 REMARK 500 REMARK 500 THIS ENTRY HAS 179 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11544 RELATED DB: BMRB REMARK 900 RELATED ID: 2RU5 RELATED DB: PDB DBREF 2RU4 A 1 115 PDB 2RU4 2RU4 1 115 DBREF 2RU4 B 116 199 PDB 2RU4 2RU4 116 199 SEQRES 1 A 115 GLY GLU LEU PRO GLN MET THR GLN GLN LEU ASN SER ASP SEQRES 2 A 115 ASP MET GLN GLU GLN LEU SER ALA THR ARG LYS PHE SER SEQRES 3 A 115 GLN ILE LEU SER ASP GLY ASN GLU GLN ILE GLN ALA VAL SEQRES 4 A 115 ILE ASP ALA GLY ALA LEU PRO ALA LEU VAL GLN LEU LEU SEQRES 5 A 115 SER SER PRO ASN GLU GLN ILE LEU GLN GLU ALA LEU TRP SEQRES 6 A 115 ALA LEU SER ASN ILE ALA SER GLY GLY ASN GLU GLN ILE SEQRES 7 A 115 GLN ALA VAL ILE ASP ALA GLY ALA LEU PRO ALA LEU VAL SEQRES 8 A 115 GLN LEU LEU SER SER PRO ASN GLU GLN ILE LEU GLN GLU SEQRES 9 A 115 ALA LEU TRP ALA LEU SER ASN ILE ALA SER GLY SEQRES 1 B 84 GLY ASN GLU GLN ILE GLN ALA VAL ILE ASP ALA GLY ALA SEQRES 2 B 84 LEU PRO ALA LEU VAL GLN LEU LEU SER SER PRO ASN GLU SEQRES 3 B 84 GLN ILE LEU GLN GLU ALA LEU TRP ALA LEU SER ASN ILE SEQRES 4 B 84 ALA SER GLY GLY ASN GLU GLN LYS GLN ALA VAL LYS GLU SEQRES 5 B 84 ALA GLY ALA LEU GLU LYS LEU GLU GLN LEU GLN SER HIS SEQRES 6 B 84 GLU ASN GLU LYS ILE GLN LYS GLU ALA GLN GLU ALA LEU SEQRES 7 B 84 GLU LYS LEU GLN SER HIS HELIX 1 1 GLU A 34 ILE A 40 1 7 HELIX 2 2 ALA A 44 LEU A 51 1 8 HELIX 3 3 LEU A 52 SER A 54 5 3 HELIX 4 4 ASN A 56 SER A 72 1 17 HELIX 5 5 GLY A 74 ASP A 83 1 10 HELIX 6 6 GLY A 85 LEU A 93 1 9 HELIX 7 7 LEU A 94 SER A 96 5 3 HELIX 8 8 ASN A 98 SER A 114 1 17 HELIX 9 9 GLN B 119 GLY B 127 1 9 HELIX 10 10 ALA B 128 LEU B 136 1 9 HELIX 11 11 ASN B 140 SER B 156 1 17 HELIX 12 12 LYS B 162 GLY B 169 1 8 HELIX 13 13 ALA B 170 GLN B 178 1 9 HELIX 14 14 ASN B 182 GLN B 197 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1