HEADER ISOMERASE 25-MAR-14 2RUD TITLE SOLUTION STRUCTURE OF THE PEPTIDYL PROLYL CIS-TRANS ISOMERASE DOMAIN TITLE 2 OF C113D MUTANT HUMAN PIN1 WITH SULFATE ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 51-163; COMPND 5 SYNONYM: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PIN1, PPIASE PIN1, COMPND 6 ROTAMASE PIN1; COMPND 7 EC: 5.2.1.8; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIN1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS PROTEIN/CIS-TRANS-ISOMERASE, PPIASE, ISOMERASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR N.XU,Y.TAMARI,N.TOCHIO,S.TATE REVDAT 3 15-MAY-24 2RUD 1 REMARK REVDAT 2 14-JUN-23 2RUD 1 REMARK SEQADV REVDAT 1 17-DEC-14 2RUD 0 JRNL AUTH N.XU,N.TOCHIO,J.WANG,Y.TAMARI,J.UEWAKI,N.UTSUNOMIYA-TATE, JRNL AUTH 2 K.IGARASHI,T.SHIRAKI,N.KOBAYASHI,S.TATE JRNL TITL THE C113D MUTATION IN HUMAN PIN1 CAUSES ALLOSTERIC JRNL TITL 2 STRUCTURAL CHANGES IN THE PHOSPHATE BINDING POCKET OF THE JRNL TITL 3 PPIASE DOMAIN THROUGH THE TUG OF WAR IN THE DUAL-HISTIDINE JRNL TITL 4 MOTIF. JRNL REF BIOCHEMISTRY V. 53 5568 2014 JRNL REFN ISSN 0006-2960 JRNL PMID 25100325 JRNL DOI 10.1021/BI5007817 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MAGRO, X-PLOR NIH REMARK 3 AUTHORS : KOBAYASHI (MAGRO), SCHWIETERS, KUSZEWSKI, TJANDRA REMARK 3 AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RUD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000150277. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 299 REMARK 210 PH : 6.6 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-13C; U-15N] C113D REMARK 210 MUTANT HPIN1 PPIASE DOMAIN-1, REMARK 210 100 MM SODIUM SULFATE-2, 50 MM REMARK 210 SODIUM PHOSPHATE-3, 5 MM EDTA-4, REMARK 210 1 MM DTT-5, 0.03 % SODIUM AZIDE- REMARK 210 6, H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HN(CA)CO; 3D HNCA; REMARK 210 3D HN(CO)CA; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D C(CO)NH; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 3D HCCH- REMARK 210 COSY; 3D HCCH-TOCSY; 3D HBHA(CO) REMARK 210 NH REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, NMRPIPE, SPARKY, TOPSPIN, REMARK 210 NMRVIEW REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 5 71.20 52.66 REMARK 500 1 ARG A 23 115.42 -164.59 REMARK 500 1 PRO A 24 38.57 -77.10 REMARK 500 1 SER A 26 -168.76 -102.42 REMARK 500 1 ARG A 73 -4.70 74.69 REMARK 500 2 SER A 2 -27.32 -152.17 REMARK 500 2 ARG A 73 -5.39 74.89 REMARK 500 2 ARG A 96 -76.87 -102.79 REMARK 500 2 SER A 101 -74.06 -79.13 REMARK 500 3 GLU A 54 -71.70 -86.02 REMARK 500 3 ASP A 66 71.69 -105.22 REMARK 500 4 GLU A 5 80.63 62.30 REMARK 500 4 PRO A 24 35.43 -88.82 REMARK 500 4 GLU A 54 -63.85 -107.66 REMARK 500 5 ARG A 23 107.77 -163.17 REMARK 500 5 ARG A 73 -43.60 73.07 REMARK 500 5 ARG A 96 -87.79 -71.25 REMARK 500 6 GLU A 5 80.04 64.03 REMARK 500 6 PRO A 6 -176.60 -69.35 REMARK 500 6 PRO A 24 34.55 -72.30 REMARK 500 6 ARG A 73 -6.27 77.77 REMARK 500 7 SER A 19 -70.59 -51.15 REMARK 500 7 SER A 21 -78.56 -153.79 REMARK 500 7 ARG A 22 -34.64 -169.07 REMARK 500 7 PRO A 24 41.18 -81.46 REMARK 500 7 GLU A 54 -74.41 -88.45 REMARK 500 7 GLN A 83 -67.75 -143.50 REMARK 500 7 ARG A 96 -74.02 -66.75 REMARK 500 8 PRO A 24 40.04 -85.90 REMARK 500 8 GLN A 29 118.70 -166.74 REMARK 500 8 ILE A 32 98.32 -66.83 REMARK 500 8 GLN A 83 -46.80 -150.68 REMARK 500 8 THR A 106 -166.60 -123.53 REMARK 500 9 HIS A 3 75.69 -111.22 REMARK 500 9 ARG A 96 -78.12 -64.40 REMARK 500 9 THR A 116 41.50 -85.12 REMARK 500 10 SER A 2 74.85 56.47 REMARK 500 10 ARG A 23 111.62 -160.46 REMARK 500 10 ARG A 73 -0.27 72.91 REMARK 500 10 ARG A 96 -72.95 -82.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11560 RELATED DB: BMRB REMARK 900 RELATED ID: 2RUC RELATED DB: PDB DBREF 2RUD A 5 117 UNP Q13526 PIN1_HUMAN 51 163 SEQADV 2RUD GLY A 1 UNP Q13526 EXPRESSION TAG SEQADV 2RUD SER A 2 UNP Q13526 EXPRESSION TAG SEQADV 2RUD HIS A 3 UNP Q13526 EXPRESSION TAG SEQADV 2RUD MET A 4 UNP Q13526 EXPRESSION TAG SEQADV 2RUD ASP A 67 UNP Q13526 CYS 113 ENGINEERED MUTATION SEQRES 1 A 117 GLY SER HIS MET GLU PRO ALA ARG VAL ARG CYS SER HIS SEQRES 2 A 117 LEU LEU VAL LYS HIS SER GLN SER ARG ARG PRO SER SER SEQRES 3 A 117 TRP ARG GLN GLU LYS ILE THR ARG THR LYS GLU GLU ALA SEQRES 4 A 117 LEU GLU LEU ILE ASN GLY TYR ILE GLN LYS ILE LYS SER SEQRES 5 A 117 GLY GLU GLU ASP PHE GLU SER LEU ALA SER GLN PHE SER SEQRES 6 A 117 ASP ASP SER SER ALA LYS ALA ARG GLY ASP LEU GLY ALA SEQRES 7 A 117 PHE SER ARG GLY GLN MET GLN LYS PRO PHE GLU ASP ALA SEQRES 8 A 117 SER PHE ALA LEU ARG THR GLY GLU MET SER GLY PRO VAL SEQRES 9 A 117 PHE THR ASP SER GLY ILE HIS ILE ILE LEU ARG THR GLU HELIX 1 1 THR A 35 SER A 52 1 18 HELIX 2 2 ASP A 56 PHE A 64 1 9 HELIX 3 3 ASP A 67 ARG A 73 5 7 HELIX 4 4 GLY A 82 MET A 84 5 3 HELIX 5 5 GLN A 85 LEU A 95 1 11 SHEET 1 A 4 ASP A 75 SER A 80 0 SHEET 2 A 4 ARG A 8 LYS A 17 -1 N VAL A 9 O PHE A 79 SHEET 3 A 4 GLY A 109 LEU A 114 -1 O ILE A 112 N LEU A 14 SHEET 4 A 4 MET A 100 PHE A 105 -1 N VAL A 104 O HIS A 111 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1