HEADER DNA BINDING PROTEIN 17-APR-15 2RV8 TITLE SOLUTION STRUCTURE OF THE PHOP DNA-BINDING DOMAIN FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING RESPONSE REGULATOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PHOPC (PHOP C-TERMINAL DOMAIN), UNP RESIDUES 141-247; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS CAS/NITR204; SOURCE 3 ORGANISM_TAXID: 1310114; SOURCE 4 GENE: J113_05350; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET-15B KEYWDS PHOPC, HETERONUCLEAR NOE, MTB, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR R.MACDONALD,D.SARKAR,B.R.AMER,R.T.CLUBB REVDAT 4 15-MAY-24 2RV8 1 REMARK REVDAT 3 14-JUN-23 2RV8 1 REMARK REVDAT 2 24-AUG-22 2RV8 1 JRNL REMARK SEQADV REVDAT 1 12-AUG-15 2RV8 0 JRNL AUTH R.MACDONALD,D.SARKAR,B.R.AMER,R.T.CLUBB JRNL TITL SOLUTION STRUCTURE OF THE PHOP DNA-BINDING DOMAIN FROM JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS. JRNL REF J.BIOMOL.NMR V. 63 111 2015 JRNL REFN ISSN 0925-2738 JRNL PMID 26209027 JRNL DOI 10.1007/S10858-015-9965-0 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.25 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RV8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000150307. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 350 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50.0 MM SODIUM PHOSPHATE-1, REMARK 210 300.0 MM SODIUM CHLORIDE-2, 0.01 REMARK 210 % SODIUM AZIDE-3, 1.0 MM [U-100% REMARK 210 13C; U-100% 15N] PHOPC-4, 93% REMARK 210 H2O/7% D2O; 50.0 MM SODIUM REMARK 210 PHOSPHATE-5, 300.0 MM SODIUM REMARK 210 CHLORIDE-6, 0.01 % SODIUM AZIDE- REMARK 210 7, 1.0 MM [U-100% 13C; U-100% REMARK 210 15N] PHOPC-8, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HBHA(CO)NH; 3D REMARK 210 HNHA; 3D 1H-15N NOESY; 3D 1H-15N REMARK 210 TOCSY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D 1H-13C NOESY AROMATIC; 3D REMARK 210 HCCH-TOCSY; 3D C(CO)NH; 3D HCCH- REMARK 210 COSY; 3D HN(CA)CO; 3D HBHANH REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRDRAW, PIPP, TALOS, REMARK 210 PROCHECKNMR, UNIO, ATNOS-CANDID, REMARK 210 CARA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 222 H ASP A 226 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 123 -85.01 -51.63 REMARK 500 1 HIS A 124 -108.03 46.43 REMARK 500 1 HIS A 125 102.09 -40.53 REMARK 500 1 HIS A 128 78.53 -119.71 REMARK 500 1 HIS A 129 55.60 -109.89 REMARK 500 1 LEU A 133 50.91 -176.07 REMARK 500 1 VAL A 134 56.89 -150.09 REMARK 500 1 SER A 138 -114.19 53.77 REMARK 500 1 HIS A 139 -161.87 -58.90 REMARK 500 1 MET A 140 -12.01 -143.33 REMARK 500 1 LYS A 141 -57.00 -142.91 REMARK 500 1 ASN A 143 23.87 -141.58 REMARK 500 1 ASN A 148 171.29 -42.48 REMARK 500 1 ALA A 154 -96.03 37.92 REMARK 500 1 HIS A 163 58.28 35.82 REMARK 500 1 ALA A 168 62.74 29.87 REMARK 500 1 TRP A 203 -6.60 -50.55 REMARK 500 1 ARG A 204 -6.81 -59.33 REMARK 500 1 ASP A 206 92.14 -175.29 REMARK 500 1 ASP A 210 -173.44 -51.63 REMARK 500 1 THR A 227 -45.10 -175.79 REMARK 500 1 ARG A 237 131.79 -38.26 REMARK 500 1 VAL A 239 -58.47 -120.08 REMARK 500 2 SER A 122 156.48 -46.17 REMARK 500 2 HIS A 126 -12.98 -163.62 REMARK 500 2 HIS A 127 -32.63 -151.60 REMARK 500 2 SER A 130 -77.68 -69.02 REMARK 500 2 LEU A 133 138.99 58.63 REMARK 500 2 ARG A 136 88.34 -166.79 REMARK 500 2 ASN A 143 16.04 53.18 REMARK 500 2 GLU A 145 72.75 51.20 REMARK 500 2 PRO A 146 -6.80 -48.98 REMARK 500 2 ARG A 147 76.11 63.94 REMARK 500 2 ALA A 154 -104.90 35.51 REMARK 500 2 HIS A 163 54.11 83.81 REMARK 500 2 ALA A 168 71.02 31.68 REMARK 500 2 TRP A 203 -4.91 -53.41 REMARK 500 2 ASP A 206 -144.61 -160.91 REMARK 500 2 PHE A 207 170.60 -42.01 REMARK 500 2 THR A 227 28.64 -172.52 REMARK 500 2 LEU A 232 -75.40 -88.21 REMARK 500 2 VAL A 239 -53.14 -129.49 REMARK 500 3 SER A 123 -26.31 -172.04 REMARK 500 3 HIS A 124 -109.06 -72.45 REMARK 500 3 HIS A 125 99.65 -46.14 REMARK 500 3 HIS A 127 -162.26 42.61 REMARK 500 3 HIS A 128 -30.38 -153.30 REMARK 500 3 HIS A 129 86.64 58.03 REMARK 500 3 HIS A 139 -158.60 -126.62 REMARK 500 3 MET A 140 21.90 -154.34 REMARK 500 REMARK 500 THIS ENTRY HAS 603 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11590 RELATED DB: BMRB DBREF 2RV8 A 142 247 UNP R4MFJ2 R4MFJ2_MYCTX 142 247 SEQADV 2RV8 MET A 120 UNP R4MFJ2 EXPRESSION TAG SEQADV 2RV8 GLY A 121 UNP R4MFJ2 EXPRESSION TAG SEQADV 2RV8 SER A 122 UNP R4MFJ2 EXPRESSION TAG SEQADV 2RV8 SER A 123 UNP R4MFJ2 EXPRESSION TAG SEQADV 2RV8 HIS A 124 UNP R4MFJ2 EXPRESSION TAG SEQADV 2RV8 HIS A 125 UNP R4MFJ2 EXPRESSION TAG SEQADV 2RV8 HIS A 126 UNP R4MFJ2 EXPRESSION TAG SEQADV 2RV8 HIS A 127 UNP R4MFJ2 EXPRESSION TAG SEQADV 2RV8 HIS A 128 UNP R4MFJ2 EXPRESSION TAG SEQADV 2RV8 HIS A 129 UNP R4MFJ2 EXPRESSION TAG SEQADV 2RV8 SER A 130 UNP R4MFJ2 EXPRESSION TAG SEQADV 2RV8 SER A 131 UNP R4MFJ2 EXPRESSION TAG SEQADV 2RV8 GLY A 132 UNP R4MFJ2 EXPRESSION TAG SEQADV 2RV8 LEU A 133 UNP R4MFJ2 EXPRESSION TAG SEQADV 2RV8 VAL A 134 UNP R4MFJ2 EXPRESSION TAG SEQADV 2RV8 PRO A 135 UNP R4MFJ2 EXPRESSION TAG SEQADV 2RV8 ARG A 136 UNP R4MFJ2 EXPRESSION TAG SEQADV 2RV8 GLY A 137 UNP R4MFJ2 EXPRESSION TAG SEQADV 2RV8 SER A 138 UNP R4MFJ2 EXPRESSION TAG SEQADV 2RV8 HIS A 139 UNP R4MFJ2 EXPRESSION TAG SEQADV 2RV8 MET A 140 UNP R4MFJ2 EXPRESSION TAG SEQADV 2RV8 LYS A 141 UNP R4MFJ2 EXPRESSION TAG SEQRES 1 A 128 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 128 LEU VAL PRO ARG GLY SER HIS MET LYS GLY ASN LYS GLU SEQRES 3 A 128 PRO ARG ASN VAL ARG LEU THR PHE ALA ASP ILE GLU LEU SEQRES 4 A 128 ASP GLU GLU THR HIS GLU VAL TRP LYS ALA GLY GLN PRO SEQRES 5 A 128 VAL SER LEU SER PRO THR GLU PHE THR LEU LEU ARG TYR SEQRES 6 A 128 PHE VAL ILE ASN ALA GLY THR VAL LEU SER LYS PRO LYS SEQRES 7 A 128 ILE LEU ASP HIS VAL TRP ARG TYR ASP PHE GLY GLY ASP SEQRES 8 A 128 VAL ASN VAL VAL GLU SER TYR VAL SER TYR LEU ARG ARG SEQRES 9 A 128 LYS ILE ASP THR GLY GLU LYS ARG LEU LEU HIS THR LEU SEQRES 10 A 128 ARG GLY VAL GLY TYR VAL LEU ARG GLU PRO ARG HELIX 1 1 PRO A 176 ILE A 187 1 12 HELIX 2 2 LYS A 195 TYR A 205 1 11 HELIX 3 3 ASN A 212 ILE A 225 1 14 SHEET 1 A 4 ARG A 150 PHE A 153 0 SHEET 2 A 4 ILE A 156 ASP A 159 -1 O LEU A 158 N LEU A 151 SHEET 3 A 4 GLU A 164 LYS A 167 -1 O TRP A 166 N GLU A 157 SHEET 4 A 4 GLN A 170 VAL A 172 -1 O GLN A 170 N LYS A 167 SHEET 1 B 3 LEU A 193 SER A 194 0 SHEET 2 B 3 GLY A 240 LEU A 243 -1 O TYR A 241 N LEU A 193 SHEET 3 B 3 LEU A 233 LEU A 236 -1 N HIS A 234 O VAL A 242 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1