HEADER DNA BINDING PROTEIN 08-JUL-15 2RVC TITLE SOLUTION STRUCTURE OF ZALPHA DOMAIN OF GOLDFISH ZBP-CONTAINING PROTEIN TITLE 2 KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERFERON-INDUCIBLE AND DOUBLE-STRANDED-DEPENDENT EIF- COMPND 3 2KINASE; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 1-64; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARASSIUS AURATUS; SOURCE 3 ORGANISM_COMMON: GOLDFISH; SOURCE 4 ORGANISM_TAXID: 7957; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS Z DNA BINDING PROTEIN, HELIX TURN HELIX, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR A.LEE,C.PARK,J.PARK,M.KWON,Y.CHOI,K.KIM,B.CHOI,J.LEE REVDAT 3 01-MAY-24 2RVC 1 REMARK REVDAT 2 07-JUN-17 2RVC 1 JRNL REVDAT 1 03-FEB-16 2RVC 0 JRNL AUTH A.R.LEE,C.J.PARK,H.K.CHEONG,K.S.RYU,J.W.PARK,M.Y.KWON,J.LEE, JRNL AUTH 2 K.K.KIM,B.S.CHOI,J.H.LEE JRNL TITL SOLUTION STRUCTURE OF THE Z-DNA BINDING DOMAIN OF PKR-LIKE JRNL TITL 2 PROTEIN KINASE FROM CARASSIUS AURATUS AND QUANTITATIVE JRNL TITL 3 ANALYSES OF THE INTERMEDIATE COMPLEX DURING B-Z TRANSITION. JRNL REF NUCLEIC ACIDS RES. V. 44 2936 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 26792893 JRNL DOI 10.1093/NAR/GKW025 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3, CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG, REMARK 3 KUSZEWSKI,NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CNS 1.3 IN EXPLICIT SOLVENT USING THE REMARK 3 RECOORD PROTOCOL REMARK 4 REMARK 4 2RVC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000150311. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-99% 13C; U-99% 15N] REMARK 210 CAZAPKZ-1, 100 MM SODIUM REMARK 210 CHLORIDE-2, 10 MM SODIUM REMARK 210 PHOSPHATE-3, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D 1H-15N NOESY; 3D REMARK 210 HCCH-TOCSY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AGILENT DD2 REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-10 REMARK 470 RES CSSEQI ATOMS REMARK 470 GLU A 64 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 33 HZ2 LYS A 34 1.52 REMARK 500 HZ1 LYS A 20 OE2 GLU A 55 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -61.41 -149.33 REMARK 500 1 ALA A 3 37.54 -170.05 REMARK 500 1 GLU A 4 -71.85 -59.71 REMARK 500 1 LYS A 20 144.55 -36.98 REMARK 500 1 SER A 21 -157.92 -174.00 REMARK 500 1 ASN A 54 -21.46 31.32 REMARK 500 1 PRO A 58 100.99 -52.04 REMARK 500 2 LYS A 20 149.74 -38.73 REMARK 500 2 SER A 21 -158.98 -177.44 REMARK 500 2 SER A 53 -149.94 -162.64 REMARK 500 2 ASN A 54 -20.92 54.63 REMARK 500 2 PRO A 58 106.87 -47.78 REMARK 500 2 MET A 63 -67.11 -124.49 REMARK 500 3 GLU A 4 -67.35 -91.64 REMARK 500 3 THR A 5 -0.63 -58.29 REMARK 500 3 LYS A 20 151.78 -37.54 REMARK 500 3 SER A 21 -155.34 -172.61 REMARK 500 3 SER A 53 -160.90 -160.62 REMARK 500 3 ASN A 54 -20.92 51.00 REMARK 500 3 PRO A 58 102.70 -53.73 REMARK 500 3 LEU A 62 -161.06 -128.72 REMARK 500 4 ALA A 3 115.52 73.93 REMARK 500 4 LYS A 20 146.59 -38.76 REMARK 500 4 SER A 21 -162.18 -177.25 REMARK 500 4 ASN A 54 -21.95 31.22 REMARK 500 4 PRO A 58 99.72 -56.48 REMARK 500 5 SER A 21 -153.48 -172.26 REMARK 500 5 SER A 53 -160.19 -161.13 REMARK 500 5 ASN A 54 -20.89 45.85 REMARK 500 5 PRO A 58 101.84 -52.67 REMARK 500 6 SER A 2 -62.00 179.64 REMARK 500 6 LYS A 20 141.17 -37.34 REMARK 500 6 SER A 21 -160.59 -175.65 REMARK 500 6 PHE A 51 -169.29 -165.74 REMARK 500 6 ASN A 54 -20.91 55.49 REMARK 500 6 GLU A 55 -157.68 -165.76 REMARK 500 6 ASP A 61 -159.84 174.89 REMARK 500 6 LEU A 62 -157.09 -134.73 REMARK 500 6 MET A 63 52.30 -106.21 REMARK 500 7 SER A 2 -65.27 -156.49 REMARK 500 7 ALA A 3 39.80 -160.48 REMARK 500 7 SER A 21 -158.12 -172.39 REMARK 500 7 PHE A 51 -158.86 -165.31 REMARK 500 7 ASN A 54 -19.85 78.39 REMARK 500 7 ASP A 61 -173.58 172.89 REMARK 500 8 LYS A 20 128.46 -36.79 REMARK 500 8 SER A 21 -169.60 -162.51 REMARK 500 8 ASN A 54 -20.51 42.05 REMARK 500 8 PRO A 58 109.89 -54.11 REMARK 500 8 ASP A 61 -179.71 173.17 REMARK 500 REMARK 500 THIS ENTRY HAS 63 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 16 0.09 SIDE CHAIN REMARK 500 2 ARG A 16 0.09 SIDE CHAIN REMARK 500 6 ARG A 16 0.13 SIDE CHAIN REMARK 500 10 ARG A 9 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11595 RELATED DB: BMRB DBREF 2RVC A 1 64 UNP Q7T2M9 Q7T2M9_CARAU 1 64 SEQRES 1 A 64 MET SER ALA GLU THR GLN MET GLU ARG LYS ILE ILE ASP SEQRES 2 A 64 PHE LEU ARG GLN ASN GLY LYS SER ILE ALA LEU THR ILE SEQRES 3 A 64 ALA LYS GLU ILE GLY LEU ASP LYS SER THR VAL ASN ARG SEQRES 4 A 64 HIS LEU TYR ASN LEU GLN ARG SER ASN GLN VAL PHE ASN SEQRES 5 A 64 SER ASN GLU LYS PRO PRO VAL TRP ASP LEU MET GLU HELIX 1 1 THR A 5 LYS A 20 1 16 HELIX 2 2 ILE A 22 GLY A 31 1 10 HELIX 3 3 ASP A 33 SER A 47 1 15 SHEET 1 A 2 VAL A 50 SER A 53 0 SHEET 2 A 2 VAL A 59 LEU A 62 -1 O ASP A 61 N PHE A 51 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1