HEADER TRANSLATION 16-OCT-15 2RVH TITLE NMR STRUCTURE OF EIF1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR EIF-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN TRANSLATION FACTOR SUI1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: SUI1, RFR1, YNL244C, N0905; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28B KEYWDS TRANSLATION, TRANSLATION INITIATION FACTOR EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGATA,E.OBAYASHI,K.ASANO REVDAT 4 15-MAY-24 2RVH 1 REMARK REVDAT 3 14-JUN-23 2RVH 1 REMARK REVDAT 2 31-MAY-17 2RVH 1 JRNL REVDAT 1 26-OCT-16 2RVH 0 JRNL AUTH E.OBAYASHI,R.E.LUNA,T.NAGATA,P.MARTIN-MARCOS,H.HIRAISHI, JRNL AUTH 2 C.R.SINGH,J.P.ERZBERGER,F.ZHANG,H.ARTHANARI,J.MORRIS, JRNL AUTH 3 R.PELLARIN,C.MOORE,I.HARMON,E.PAPADOPOULOS,H.YOSHIDA, JRNL AUTH 4 M.L.NASR,S.UNZAI,B.THOMPSON,E.AUBE,S.HUSTAK,F.STENGEL, JRNL AUTH 5 E.DAGRACA,A.ANANBANDAM,P.GAO,T.URANO,A.G.HINNEBUSCH, JRNL AUTH 6 G.WAGNER,K.ASANO JRNL TITL MOLECULAR LANDSCAPE OF THE RIBOSOME PRE-INITIATION COMPLEX JRNL TITL 2 DURING MRNA SCANNING: STRUCTURAL ROLE FOR EIF3C AND ITS JRNL TITL 3 CONTROL BY EIF5 JRNL REF CELL REP V. 18 2651 2017 JRNL REFN ESSN 2211-1247 JRNL PMID 28297669 JRNL DOI 10.1016/J.CELREP.2017.02.052 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 9 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RVH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000150315. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 170 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-100% 13C; U-100% 15N] REMARK 210 ENTITY-1, 20 MM SODIUM PHOSPHATE- REMARK 210 2, 150 MM SODIUM CHLORIDE-3, 1 REMARK 210 MM DTT-4, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HN(CA)CO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D C(CO)NH; 3D HBHA(CO) REMARK 210 NH; 2D 1H-13C HSQC; 3D HCCH- REMARK 210 TOCSY; 3D HCCH-COSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.0.17, KUJIRA 0.984, REMARK 210 NMRVIEW, NMRDRAW, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 33 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 4 ARG A 33 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 11 -144.06 -89.26 REMARK 500 1 ASN A 24 126.45 174.49 REMARK 500 1 ARG A 36 -16.91 78.54 REMARK 500 2 SER A 2 -171.57 70.28 REMARK 500 2 PHE A 9 164.52 74.09 REMARK 500 2 PRO A 11 -135.20 -86.14 REMARK 500 2 PHE A 12 -141.11 -87.95 REMARK 500 2 ALA A 13 -163.77 -73.99 REMARK 500 2 ASP A 14 48.82 -148.00 REMARK 500 2 THR A 20 -39.33 72.34 REMARK 500 2 ALA A 21 31.05 -75.65 REMARK 500 2 THR A 22 -34.42 76.80 REMARK 500 2 ASN A 24 141.58 -177.16 REMARK 500 2 ASN A 34 69.37 -168.02 REMARK 500 3 SER A 2 -67.45 -160.07 REMARK 500 4 GLU A 4 -18.56 -158.08 REMARK 500 4 PHE A 12 -155.63 -135.36 REMARK 500 5 PHE A 12 145.09 -171.42 REMARK 500 5 ASP A 17 -153.33 -160.65 REMARK 500 5 SER A 23 -11.32 69.74 REMARK 500 5 HIS A 106 -161.54 -126.45 REMARK 500 6 ILE A 3 -142.97 46.84 REMARK 500 6 PRO A 11 46.86 -81.96 REMARK 500 7 ASN A 34 -101.68 -167.95 REMARK 500 8 THR A 20 -19.48 65.37 REMARK 500 8 ASN A 34 63.03 -106.66 REMARK 500 8 HIS A 106 -157.71 -126.84 REMARK 500 9 GLU A 4 -8.40 76.55 REMARK 500 9 PHE A 12 168.90 177.87 REMARK 500 9 ASN A 34 -127.72 -162.37 REMARK 500 10 PRO A 11 -145.41 -93.66 REMARK 500 11 LEU A 6 -52.78 72.23 REMARK 500 11 GLU A 19 -41.25 -149.19 REMARK 500 11 SER A 23 134.14 88.68 REMARK 500 11 GLN A 84 25.05 -75.14 REMARK 500 12 PHE A 12 3.16 -162.79 REMARK 500 13 THR A 20 12.75 -148.00 REMARK 500 13 HIS A 106 -159.24 -126.07 REMARK 500 14 ASN A 5 30.04 -150.34 REMARK 500 14 PHE A 12 142.25 -176.78 REMARK 500 14 THR A 22 -100.24 -106.97 REMARK 500 14 ASN A 34 -44.29 -168.27 REMARK 500 15 LYS A 37 32.12 -73.47 REMARK 500 16 SER A 2 35.33 -75.04 REMARK 500 16 THR A 20 -71.69 -80.98 REMARK 500 17 THR A 20 147.48 78.24 REMARK 500 17 ASN A 24 -47.09 -159.60 REMARK 500 17 ASN A 34 -41.58 -149.15 REMARK 500 17 ASP A 83 52.37 -105.09 REMARK 500 17 GLN A 84 21.47 -75.54 REMARK 500 REMARK 500 THIS ENTRY HAS 54 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11599 RELATED DB: BMRB DBREF 2RVH A 1 108 UNP P32911 SUI1_YEAST 1 108 SEQRES 1 A 108 MET SER ILE GLU ASN LEU LYS SER PHE ASP PRO PHE ALA SEQRES 2 A 108 ASP THR GLY ASP ASP GLU THR ALA THR SER ASN TYR ILE SEQRES 3 A 108 HIS ILE ARG ILE GLN GLN ARG ASN GLY ARG LYS THR LEU SEQRES 4 A 108 THR THR VAL GLN GLY VAL PRO GLU GLU TYR ASP LEU LYS SEQRES 5 A 108 ARG ILE LEU LYS VAL LEU LYS LYS ASP PHE ALA CYS ASN SEQRES 6 A 108 GLY ASN ILE VAL LYS ASP PRO GLU MET GLY GLU ILE ILE SEQRES 7 A 108 GLN LEU GLN GLY ASP GLN ARG ALA LYS VAL CYS GLU PHE SEQRES 8 A 108 MET ILE SER GLN LEU GLY LEU GLN LYS LYS ASN ILE LYS SEQRES 9 A 108 ILE HIS GLY PHE HELIX 1 1 ASP A 50 ASP A 61 1 12 HELIX 2 2 GLN A 84 GLN A 95 1 12 HELIX 3 3 GLN A 99 LYS A 101 5 3 SHEET 1 A 5 GLY A 66 ASP A 71 0 SHEET 2 A 5 GLY A 75 GLN A 81 -1 O ILE A 77 N VAL A 69 SHEET 3 A 5 THR A 38 GLN A 43 -1 N VAL A 42 O ILE A 78 SHEET 4 A 5 ILE A 26 GLN A 32 -1 N GLN A 31 O LEU A 39 SHEET 5 A 5 ILE A 103 HIS A 106 1 O LYS A 104 N ILE A 26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1