HEADER TRANSCRIPTION/PEPTIDE 18-DEC-15 2RVN TITLE SOLUTION STRUCTURE OF THE CHROMODOMAIN OF HP1A WITH THE PHOSPHORYLATED TITLE 2 N-TERMINAL TAIL COMPLEXED WITH H3K9ME3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMOBOX PROTEIN HOMOLOG 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, UNP RESIDUES 1-80; COMPND 5 SYNONYM: HETEROCHROMATIN PROTEIN 1 HOMOLOG ALPHA, HP1 ALPHA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 18-MER PEPTIDE OF HISTONE H3; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CBX5, HP1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PCOLD; SOURCE 10 OTHER_DETAILS: FOR PHOSPHORYLATION OF SER THE EXPRESSION WITH SOURCE 11 PRSFDUET (CK2); SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 15 ORGANISM_COMMON: MOUSE; SOURCE 16 ORGANISM_TAXID: 10090; SOURCE 17 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS CHROMODOMAIN, HP1ALPHA, TRANSCRIPTION-PEPTIDE COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.KAWAGUCHI,Y.NISHIMURA REVDAT 1 16-MAR-16 2RVN 0 JRNL AUTH H.SHIMOJO,A.KAWAGUCHI,T.ODA,N.HASHIGUCHI,S.OMORI, JRNL AUTH 2 K.MORITSUGU,A.KIDERA,K.HIRAGAMI-HAMADA,J.NAKAYAMA,M.SATO, JRNL AUTH 3 Y.NISHIMURA JRNL TITL EXTENDED STRING-LIKE BINDING OF THE PHOSPHORYLATED HP1 ALPHA JRNL TITL 2 N-TERMINAL TAIL TO THE LYSINE 9-METHYLATED HISTONE H3 TAIL JRNL REF SCI REP V. 6 22527 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 26934956 JRNL DOI 10.1038/SREP22527 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RVN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-DEC-15. REMARK 100 THE RCSB ID CODE IS RCSB150321. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM [U-99% 13C; U-99% 15N] REMARK 210 POTASSIUM PHOSPHATE-1, 10 MM [U- REMARK 210 99% 13C; U-99% 15N] SODIUM REMARK 210 CHLORIDE-2, 5 MM [U-99% 13C; U- REMARK 210 99% 15N] DTT-3, 90% H2O/10% D2O; REMARK 210 20 MM [U-99% 13C; U-99% 15N] REMARK 210 POTASSIUM PHOSPHATE-4, 10 MM [U- REMARK 210 99% 13C; U-99% 15N] SODIUM REMARK 210 CHLORIDE-5, 5 MM [U-99% 13C; U- REMARK 210 99% 15N] DTT-6, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D 1H-1H TOCSY; 2D 1H- REMARK 210 1H NOESY; 3D CBCA(CO)NH; 3D HNCO; REMARK 210 3D HNCA; 3D HNCACB; 3D HN(CO)CA; REMARK 210 3D HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, OLIVIA, CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 600 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 18 -53.76 -145.16 REMARK 500 1 LEU A 57 104.73 -55.85 REMARK 500 1 ASP A 58 46.96 -107.55 REMARK 500 1 CYS A 59 81.22 -161.51 REMARK 500 1 THR B 3 -52.26 -132.30 REMARK 500 1 ALA B 15 77.22 -112.57 REMARK 500 2 LEU A 57 100.31 -55.42 REMARK 500 2 ASP A 58 52.52 -106.47 REMARK 500 2 CYS A 59 80.43 -159.12 REMARK 500 3 SEP A 12 77.64 -109.63 REMARK 500 3 SEP A 13 -175.92 54.07 REMARK 500 3 GLU A 17 97.18 55.22 REMARK 500 3 LEU A 57 100.90 -54.56 REMARK 500 3 ASP A 58 53.86 -105.99 REMARK 500 3 CYS A 59 80.98 -159.44 REMARK 500 4 GLU A 18 108.00 -161.98 REMARK 500 4 LYS A 42 106.23 -51.14 REMARK 500 4 LEU A 57 101.59 -53.52 REMARK 500 4 ASP A 58 55.66 -104.34 REMARK 500 4 CYS A 59 81.02 -162.50 REMARK 500 5 LEU A 57 101.84 -53.45 REMARK 500 5 ASP A 58 53.24 -101.30 REMARK 500 5 CYS A 59 79.55 -162.23 REMARK 500 6 LEU A 57 101.07 -54.23 REMARK 500 6 ASP A 58 52.78 -105.02 REMARK 500 6 CYS A 59 79.52 -159.27 REMARK 500 6 ARG B 2 53.11 -119.90 REMARK 500 6 LYS B 4 108.86 -163.17 REMARK 500 7 HIS A 0 42.49 39.20 REMARK 500 7 LEU A 57 101.15 -54.44 REMARK 500 7 ASP A 58 54.82 -101.75 REMARK 500 7 CYS A 59 80.54 -160.79 REMARK 500 8 LYS A 3 96.13 57.14 REMARK 500 8 GLU A 18 -53.38 -130.02 REMARK 500 8 LEU A 57 103.21 -55.49 REMARK 500 8 ASP A 58 42.08 -108.66 REMARK 500 8 CYS A 59 82.65 -161.48 REMARK 500 8 GLU A 77 98.51 58.30 REMARK 500 9 SEP A 11 88.98 -163.09 REMARK 500 9 ASP A 16 107.94 -59.24 REMARK 500 9 LEU A 57 102.67 -51.97 REMARK 500 9 ASP A 58 45.74 -102.32 REMARK 500 9 CYS A 59 75.55 -152.87 REMARK 500 10 SER A -1 109.48 -164.95 REMARK 500 10 LEU A 57 100.06 -55.70 REMARK 500 10 ASP A 58 55.20 -103.31 REMARK 500 10 CYS A 59 82.27 -160.33 REMARK 500 10 ALA B 15 77.28 -112.62 REMARK 500 11 SEP A 13 -62.00 -162.87 REMARK 500 11 LEU A 57 103.91 -49.15 REMARK 500 REMARK 500 THIS ENTRY HAS 99 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 8 M3L B 9 1 -136.13 REMARK 500 ARG B 8 M3L B 9 2 -136.19 REMARK 500 ARG B 8 M3L B 9 3 -136.12 REMARK 500 ARG B 8 M3L B 9 4 -136.17 REMARK 500 ARG B 8 M3L B 9 5 -136.11 REMARK 500 ARG B 8 M3L B 9 6 -136.20 REMARK 500 ARG B 8 M3L B 9 7 -136.15 REMARK 500 ARG B 8 M3L B 9 8 -136.14 REMARK 500 ARG B 8 M3L B 9 9 -136.13 REMARK 500 ARG B 8 M3L B 9 10 -136.14 REMARK 500 ARG B 8 M3L B 9 11 -136.15 REMARK 500 ARG B 8 M3L B 9 12 -136.19 REMARK 500 ARG B 8 M3L B 9 13 -136.09 REMARK 500 ARG B 8 M3L B 9 14 -136.12 REMARK 500 ARG B 8 M3L B 9 15 -136.12 REMARK 500 ARG B 8 M3L B 9 16 -136.11 REMARK 500 ARG B 8 M3L B 9 17 -136.16 REMARK 500 ARG B 8 M3L B 9 18 -136.13 REMARK 500 ARG B 8 M3L B 9 19 -136.16 REMARK 500 ARG B 8 M3L B 9 20 -136.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11606 RELATED DB: BMRB REMARK 900 RELATED ID: 2RVL RELATED DB: PDB REMARK 900 RELATED ID: 2RVM RELATED DB: PDB DBREF 2RVN A 1 80 UNP Q61686 CBX5_MOUSE 1 80 DBREF 2RVN B 1 18 PDB 2RVN 2RVN 1 18 SEQADV 2RVN GLY A -2 UNP Q61686 EXPRESSION TAG SEQADV 2RVN SER A -1 UNP Q61686 EXPRESSION TAG SEQADV 2RVN HIS A 0 UNP Q61686 EXPRESSION TAG SEQRES 1 A 83 GLY SER HIS MET GLY LYS LYS THR LYS ARG THR ALA ASP SEQRES 2 A 83 SEP SEP SEP SEP GLU ASP GLU GLU GLU TYR VAL VAL GLU SEQRES 3 A 83 LYS VAL LEU ASP ARG ARG MET VAL LYS GLY GLN VAL GLU SEQRES 4 A 83 TYR LEU LEU LYS TRP LYS GLY PHE SER GLU GLU HIS ASN SEQRES 5 A 83 THR TRP GLU PRO GLU LYS ASN LEU ASP CYS PRO GLU LEU SEQRES 6 A 83 ILE SER GLU PHE MET LYS LYS TYR LYS LYS MET LYS GLU SEQRES 7 A 83 GLY GLU ASN ASN LYS SEQRES 1 B 18 ALA ARG THR LYS GLN THR ALA ARG M3L SER THR GLY GLY SEQRES 2 B 18 LYS ALA PRO ARG TYR MODRES 2RVN SEP A 11 SER PHOSPHOSERINE MODRES 2RVN SEP A 12 SER PHOSPHOSERINE MODRES 2RVN SEP A 13 SER PHOSPHOSERINE MODRES 2RVN SEP A 14 SER PHOSPHOSERINE MODRES 2RVN M3L B 9 LYS N-TRIMETHYLLYSINE HET SEP A 11 14 HET SEP A 12 14 HET SEP A 13 14 HET SEP A 14 14 HET M3L B 9 31 HETNAM SEP PHOSPHOSERINE HETNAM M3L N-TRIMETHYLLYSINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 SEP 4(C3 H8 N O6 P) FORMUL 2 M3L C9 H21 N2 O2 1+ HELIX 1 1 SER A 45 ASN A 49 5 5 HELIX 2 2 CYS A 59 LYS A 74 1 16 SHEET 1 A 3 VAL A 22 VAL A 31 0 SHEET 2 A 3 GLN A 34 TRP A 41 -1 O GLN A 34 N VAL A 31 SHEET 3 A 3 TRP A 51 PRO A 53 -1 O GLU A 52 N TYR A 37 LINK C ASP A 10 N SEP A 11 1555 1555 1.33 LINK C SEP A 11 N SEP A 12 1555 1555 1.33 LINK C SEP A 12 N SEP A 13 1555 1555 1.33 LINK C SEP A 13 N SEP A 14 1555 1555 1.33 LINK C SEP A 14 N GLU A 15 1555 1555 1.33 LINK C ARG B 8 N M3L B 9 1555 1555 1.33 LINK C M3L B 9 N SER B 10 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1