data_2RVP # _entry.id 2RVP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id _database_2.pdbx_database_accession _database_2.pdbx_DOI RCSB150323 RCSB ? ? 2RVP PDB pdb_00002rvp 10.2210/pdb2rvp/pdb 11608 BMRB ? 10.13018/BMR11608 D_1000150323 WWPDB ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-08-31 2 'Structure model' 1 1 2017-06-07 3 'Structure model' 1 2 2023-06-14 4 'Structure model' 1 3 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_nmr_spectrometer 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site 8 4 'Structure model' chem_comp_atom 9 4 'Structure model' chem_comp_bond 10 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 3 'Structure model' '_pdbx_nmr_software.name' 5 3 'Structure model' '_pdbx_nmr_spectrometer.model' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 3 'Structure model' '_struct_conn.pdbx_dist_value' 13 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 14 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 15 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 16 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 17 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 18 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 19 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 20 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 21 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 22 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 23 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 24 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 25 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 26 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 27 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 28 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 29 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 30 4 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2RVP _pdbx_database_status.methods_development_category ? _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2016-03-22 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # _pdbx_database_related.db_id 11608 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dairaku, T.' 1 'Furuita, K.' 2 'Sato, H.' 3 'Sebera, J.' 4 'Nakashima, K.' 5 'Kondo, J.' 6 'Yamanaka, D.' 7 'Kondo, Y.' 8 'Okamoto, I.' 9 'Ono, A.' 10 'Sychrovsky, V.' 11 'Kojima, C.' 12 'Tanaka, Y.' 13 # _citation.id primary _citation.title ;Structure Determination of an Ag(I) -Mediated Cytosine-Cytosine Base Pair within DNA Duplex in Solution with (1) H/(15) N/(109) Ag NMR Spectroscopy. ; _citation.journal_abbrev Chemistry _citation.journal_volume 22 _citation.page_first 13028 _citation.page_last 13031 _citation.year 2016 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1521-3765 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 27505707 _citation.pdbx_database_id_DOI 10.1002/chem.201603048 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dairaku, T.' 1 ? primary 'Furuita, K.' 2 ? primary 'Sato, H.' 3 ? primary 'Sebera, J.' 4 ? primary 'Nakashima, K.' 5 ? primary 'Kondo, J.' 6 ? primary 'Yamanaka, D.' 7 ? primary 'Kondo, Y.' 8 ? primary 'Okamoto, I.' 9 ? primary 'Ono, A.' 10 ? primary 'Sychrovsky, V.' 11 ? primary 'Kojima, C.' 12 ? primary 'Tanaka, Y.' 13 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*AP*AP*TP*AP*TP*AP*CP*TP*TP*AP*AP*TP*TP*A)-3') ; 4566.021 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*TP*AP*AP*TP*TP*AP*AP*CP*TP*AP*TP*AP*TP*TP*A)-3') ; 4566.021 1 ? ? ? ? 3 non-polymer syn 'SILVER ION' 107.868 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DA)(DA)(DT)(DA)(DT)(DA)(DC)(DT)(DT)(DA)(DA)(DT)(DT)(DA)' TAATATACTTAATTA 1 ? 2 polydeoxyribonucleotide no no '(DT)(DA)(DA)(DT)(DT)(DA)(DA)(DC)(DT)(DA)(DT)(DA)(DT)(DT)(DA)' TAATTAACTATATTA 2 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'SILVER ION' _pdbx_entity_nonpoly.comp_id AG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DA n 1 3 DA n 1 4 DT n 1 5 DA n 1 6 DT n 1 7 DA n 1 8 DC n 1 9 DT n 1 10 DT n 1 11 DA n 1 12 DA n 1 13 DT n 1 14 DT n 1 15 DA n 2 1 DT n 2 2 DA n 2 3 DA n 2 4 DT n 2 5 DT n 2 6 DA n 2 7 DA n 2 8 DC n 2 9 DT n 2 10 DA n 2 11 DT n 2 12 DA n 2 13 DT n 2 14 DT n 2 15 DA n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'synthetic construct' ? 32630 ? 2 1 sample ? ? 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AG non-polymer . 'SILVER ION' ? 'Ag 1' 107.868 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT 1 . n A 1 2 DA 2 2 2 DA DA 1 . n A 1 3 DA 3 3 3 DA DA 1 . n A 1 4 DT 4 4 4 DT DT 1 . n A 1 5 DA 5 5 5 DA DA 1 . n A 1 6 DT 6 6 6 DT DT 1 . n A 1 7 DA 7 7 7 DA DA 1 . n A 1 8 DC 8 8 8 DC DC 1 . n A 1 9 DT 9 9 9 DT DT 1 . n A 1 10 DT 10 10 10 DT DT 1 . n A 1 11 DA 11 11 11 DA DA 1 . n A 1 12 DA 12 12 12 DA DA 1 . n A 1 13 DT 13 13 13 DT DT 1 . n A 1 14 DT 14 14 14 DT DT 1 . n A 1 15 DA 15 15 15 DA DA 1 . n B 2 1 DT 1 16 16 DT DT 2 . n B 2 2 DA 2 17 17 DA DA 2 . n B 2 3 DA 3 18 18 DA DA 2 . n B 2 4 DT 4 19 19 DT DT 2 . n B 2 5 DT 5 20 20 DT DT 2 . n B 2 6 DA 6 21 21 DA DA 2 . n B 2 7 DA 7 22 22 DA DA 2 . n B 2 8 DC 8 23 23 DC DC 2 . n B 2 9 DT 9 24 24 DT DT 2 . n B 2 10 DA 10 25 25 DA DA 2 . n B 2 11 DT 11 26 26 DT DT 2 . n B 2 12 DA 12 27 27 DA DA 2 . n B 2 13 DT 13 28 28 DT DT 2 . n B 2 14 DT 14 29 29 DT DT 2 . n B 2 15 DA 15 30 30 DA DA 2 . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id AG _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 35 _pdbx_nonpoly_scheme.pdb_mon_id AG _pdbx_nonpoly_scheme.auth_mon_id AG _pdbx_nonpoly_scheme.pdb_strand_id 1 _pdbx_nonpoly_scheme.pdb_ins_code . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2RVP _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2RVP _struct.title 'Solution structure of DNA Containing Metallo-Base-Pair' _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2RVP _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, METALLO-DNA, METALLO-BASE-PAIR, C-Ag(I)-C BASE-PAIR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 2RVP 2RVP 1 ? ? ? 2 PDB 2RVP 2RVP 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2RVP 1 1 ? 15 ? 2RVP 1 ? 15 ? 1 15 2 2 2RVP 2 1 ? 15 ? 2RVP 16 ? 30 ? 16 30 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DC 8 N3 ? ? ? 1_555 C AG . AG ? ? 1 DC 8 1 AG 101 1_555 ? ? ? ? ? ? ? 2.200 ? ? metalc2 metalc ? ? C AG . AG ? ? ? 1_555 B DC 8 N3 ? ? 1 AG 101 2 DC 23 1_555 ? ? ? ? ? ? ? 2.198 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 15 N1 ? ? 1 DT 1 2 DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 15 N6 ? ? 1 DT 1 2 DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 14 N3 ? ? 1 DA 2 2 DT 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 14 O4 ? ? 1 DA 2 2 DT 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 13 N3 ? ? 1 DA 3 2 DT 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 13 O4 ? ? 1 DA 3 2 DT 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 12 N1 ? ? 1 DT 4 2 DA 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 12 N6 ? ? 1 DT 4 2 DA 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 11 N3 ? ? 1 DA 5 2 DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 11 O4 ? ? 1 DA 5 2 DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 10 N1 ? ? 1 DT 6 2 DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 10 N6 ? ? 1 DT 6 2 DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 9 N3 ? ? 1 DA 7 2 DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 9 O4 ? ? 1 DA 7 2 DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 7 N1 ? ? 1 DT 9 2 DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 7 N6 ? ? 1 DT 9 2 DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 6 N1 ? ? 1 DT 10 2 DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 6 N6 ? ? 1 DT 10 2 DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 5 N3 ? ? 1 DA 11 2 DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 5 O4 ? ? 1 DA 11 2 DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 4 N3 ? ? 1 DA 12 2 DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 4 O4 ? ? 1 DA 12 2 DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 13 N3 ? ? ? 1_555 B DA 3 N1 ? ? 1 DT 13 2 DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 13 O4 ? ? ? 1_555 B DA 3 N6 ? ? 1 DT 13 2 DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 2 N1 ? ? 1 DT 14 2 DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 2 N6 ? ? 1 DT 14 2 DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DA 15 N1 ? ? ? 1_555 B DT 1 N3 ? ? 1 DA 15 2 DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DA 15 N6 ? ? ? 1_555 B DT 1 O4 ? ? 1 DA 15 2 DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id N3 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id DC _pdbx_struct_conn_angle.ptnr1_label_seq_id 8 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id 1 _pdbx_struct_conn_angle.ptnr1_auth_comp_id DC _pdbx_struct_conn_angle.ptnr1_auth_seq_id 8 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id AG _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id C _pdbx_struct_conn_angle.ptnr2_label_comp_id AG _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id 1 _pdbx_struct_conn_angle.ptnr2_auth_comp_id AG _pdbx_struct_conn_angle.ptnr2_auth_seq_id 101 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id N3 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id B _pdbx_struct_conn_angle.ptnr3_label_comp_id DC _pdbx_struct_conn_angle.ptnr3_label_seq_id 8 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id 2 _pdbx_struct_conn_angle.ptnr3_auth_comp_id DC _pdbx_struct_conn_angle.ptnr3_auth_seq_id 23 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 179.9 _pdbx_struct_conn_angle.value_esd ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id 1 _struct_site.pdbx_auth_comp_id AG _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE AG 1 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 DA A 7 ? DA 1 7 . ? 1_555 ? 2 AC1 3 DC A 8 ? DC 1 8 . ? 1_555 ? 3 AC1 3 DC B 8 ? DC 2 23 . ? 1_555 ? # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2RVP _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 1 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2RVP _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;2 mM DNA (5'-D(*TP*AP*AP*TP*AP*TP*AP*CP*TP*TP*AP*AP*TP*TP*A)-3')-1, 2 mM DNA (5'-D(*TP*AP*AP*TP*TP*AP*AP*CP*TP*AP*TP*AP*TP*TP*A)-3')-2, 2.1 mM AgNO3-3, 100 mM NaNO3-4, 90% H2O/10% D2O ; 1 '90% H2O/10% D2O' ;2 mM DNA (5'-D(*TP*AP*AP*TP*AP*TP*AP*CP*TP*TP*AP*AP*TP*TP*A)-3')-5, 2 mM DNA (5'-D(*TP*AP*AP*TP*TP*AP*AP*CP*TP*AP*TP*AP*TP*TP*A)-3')-6, 2.1 mM AgNO3-7, 100 mM NaNO3-8, 100% D2O ; 2 '100% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id ;DNA (5'-D(*TP*AP*AP*TP*AP*TP*AP*CP*TP*TP*AP*AP*TP*TP*A)-3')-1 ; 2 ? mM ? 1 ;DNA (5'-D(*TP*AP*AP*TP*TP*AP*AP*CP*TP*AP*TP*AP*TP*TP*A)-3')-2 ; 2 ? mM ? 1 AgNO3-3 2.1 ? mM ? 1 NaNO3-4 100 ? mM ? 1 ;DNA (5'-D(*TP*AP*AP*TP*AP*TP*AP*CP*TP*TP*AP*AP*TP*TP*A)-3')-5 ; 2 ? mM ? 2 ;DNA (5'-D(*TP*AP*AP*TP*TP*AP*AP*CP*TP*AP*TP*AP*TP*TP*A)-3')-6 ; 2 ? mM ? 2 AgNO3-7 2.1 ? mM ? 2 NaNO3-8 100 ? mM ? 2 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 0.1 6.9 ambient atm 298 K 2 0.1 ? ambient atm 298 K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 2 2 2 '2D 1H-1H NOESY' 2 3 2 '2D DQF-COSY' 2 4 2 '2D 1H-13C HSQC' # _pdbx_nmr_refine.entry_id 2RVP _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.ordinal _pdbx_nmr_software.version Goddard 'chemical shift assignment' Sparky 1 ? Goddard 'peak picking' Sparky 2 ? 'Thomas L. James' 'data analysis' MARDIGRAS 3 ? 'Thomas L. James' 'structure solution' MARDIGRAS 4 ? 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNS 5 ? 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS 6 ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AG AG AG N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DT OP3 O N N 72 DT P P N N 73 DT OP1 O N N 74 DT OP2 O N N 75 DT "O5'" O N N 76 DT "C5'" C N N 77 DT "C4'" C N R 78 DT "O4'" O N N 79 DT "C3'" C N S 80 DT "O3'" O N N 81 DT "C2'" C N N 82 DT "C1'" C N R 83 DT N1 N N N 84 DT C2 C N N 85 DT O2 O N N 86 DT N3 N N N 87 DT C4 C N N 88 DT O4 O N N 89 DT C5 C N N 90 DT C7 C N N 91 DT C6 C N N 92 DT HOP3 H N N 93 DT HOP2 H N N 94 DT "H5'" H N N 95 DT "H5''" H N N 96 DT "H4'" H N N 97 DT "H3'" H N N 98 DT "HO3'" H N N 99 DT "H2'" H N N 100 DT "H2''" H N N 101 DT "H1'" H N N 102 DT H3 H N N 103 DT H71 H N N 104 DT H72 H N N 105 DT H73 H N N 106 DT H6 H N N 107 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DT OP3 P sing N N 74 DT OP3 HOP3 sing N N 75 DT P OP1 doub N N 76 DT P OP2 sing N N 77 DT P "O5'" sing N N 78 DT OP2 HOP2 sing N N 79 DT "O5'" "C5'" sing N N 80 DT "C5'" "C4'" sing N N 81 DT "C5'" "H5'" sing N N 82 DT "C5'" "H5''" sing N N 83 DT "C4'" "O4'" sing N N 84 DT "C4'" "C3'" sing N N 85 DT "C4'" "H4'" sing N N 86 DT "O4'" "C1'" sing N N 87 DT "C3'" "O3'" sing N N 88 DT "C3'" "C2'" sing N N 89 DT "C3'" "H3'" sing N N 90 DT "O3'" "HO3'" sing N N 91 DT "C2'" "C1'" sing N N 92 DT "C2'" "H2'" sing N N 93 DT "C2'" "H2''" sing N N 94 DT "C1'" N1 sing N N 95 DT "C1'" "H1'" sing N N 96 DT N1 C2 sing N N 97 DT N1 C6 sing N N 98 DT C2 O2 doub N N 99 DT C2 N3 sing N N 100 DT N3 C4 sing N N 101 DT N3 H3 sing N N 102 DT C4 O4 doub N N 103 DT C4 C5 sing N N 104 DT C5 C7 sing N N 105 DT C5 C6 doub N N 106 DT C7 H71 sing N N 107 DT C7 H72 sing N N 108 DT C7 H73 sing N N 109 DT C6 H6 sing N N 110 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2RVP 'double helix' 2RVP 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 15 1_555 0.202 -0.035 -0.180 1.795 3.593 3.568 1 1_DT1:DA30_2 1 1 ? 2 30 ? 20 1 1 A DA 2 1_555 B DT 14 1_555 0.301 -0.020 -0.189 2.110 0.916 4.133 2 1_DA2:DT29_2 1 2 ? 2 29 ? 20 1 1 A DA 3 1_555 B DT 13 1_555 -0.246 0.031 0.057 3.202 4.255 -0.025 3 1_DA3:DT28_2 1 3 ? 2 28 ? 20 1 1 A DT 4 1_555 B DA 12 1_555 0.389 -0.169 -0.224 -0.201 2.209 -8.658 4 1_DT4:DA27_2 1 4 ? 2 27 ? 20 1 1 A DA 5 1_555 B DT 11 1_555 0.313 0.066 -0.086 -0.414 3.392 0.199 5 1_DA5:DT26_2 1 5 ? 2 26 ? 20 1 1 A DT 6 1_555 B DA 10 1_555 -0.272 -0.070 -0.324 2.103 2.071 -1.920 6 1_DT6:DA25_2 1 6 ? 2 25 ? 20 1 1 A DA 7 1_555 B DT 9 1_555 0.264 -0.112 -0.258 -0.263 2.697 -1.360 7 1_DA7:DT24_2 1 7 ? 2 24 ? 20 1 1 A DT 9 1_555 B DA 7 1_555 -0.344 -0.061 -0.161 1.708 3.920 -4.422 8 1_DT9:DA22_2 1 9 ? 2 22 ? 20 1 1 A DT 10 1_555 B DA 6 1_555 -0.372 0.004 0.009 0.737 0.873 2.114 9 1_DT10:DA21_2 1 10 ? 2 21 ? 20 1 1 A DA 11 1_555 B DT 5 1_555 0.396 -0.020 -0.123 -1.814 5.298 4.030 10 1_DA11:DT20_2 1 11 ? 2 20 ? 20 1 1 A DA 12 1_555 B DT 4 1_555 0.358 -0.034 -0.158 -0.438 4.306 -0.650 11 1_DA12:DT19_2 1 12 ? 2 19 ? 20 1 1 A DT 13 1_555 B DA 3 1_555 0.178 0.060 -0.181 0.249 3.153 -4.812 12 1_DT13:DA18_2 1 13 ? 2 18 ? 20 1 1 A DT 14 1_555 B DA 2 1_555 -0.318 -0.022 -0.195 -2.302 0.709 2.735 13 1_DT14:DA17_2 1 14 ? 2 17 ? 20 1 1 A DA 15 1_555 B DT 1 1_555 0.317 -0.022 -0.386 -4.568 3.913 4.032 14 1_DA15:DT16_2 1 15 ? 2 16 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 15 1_555 A DA 2 1_555 B DT 14 1_555 -0.170 -0.189 4.235 1.330 -23.999 42.853 2.193 0.340 3.825 -30.185 -1.673 48.856 1 11_DT1DA2:DT29DA30_22 1 1 ? 2 30 ? 1 2 ? 2 29 ? 1 A DA 2 1_555 B DT 14 1_555 A DA 3 1_555 B DT 13 1_555 -0.254 -0.540 3.463 -2.176 -13.266 36.601 0.949 0.092 3.456 -20.302 3.330 38.912 2 11_DA2DA3:DT28DT29_22 1 2 ? 2 29 ? 1 3 ? 2 28 ? 1 A DA 3 1_555 B DT 13 1_555 A DT 4 1_555 B DA 12 1_555 -0.914 -0.517 3.501 3.467 -7.125 37.640 0.166 1.852 3.444 -10.895 -5.302 38.436 3 11_DA3DT4:DA27DT28_22 1 3 ? 2 28 ? 1 4 ? 2 27 ? 1 A DT 4 1_555 B DA 12 1_555 A DA 5 1_555 B DT 11 1_555 0.544 -0.179 3.382 -2.169 -9.157 40.425 0.759 -1.008 3.312 -13.039 3.088 41.462 4 11_DT4DA5:DT26DA27_22 1 4 ? 2 27 ? 1 5 ? 2 26 ? 1 A DA 5 1_555 B DT 11 1_555 A DT 6 1_555 B DA 10 1_555 -0.381 -0.497 3.474 1.948 -14.180 34.812 1.250 0.870 3.391 -22.557 -3.098 37.555 5 11_DA5DT6:DA25DT26_22 1 5 ? 2 26 ? 1 6 ? 2 25 ? 1 A DT 6 1_555 B DA 10 1_555 A DA 7 1_555 B DT 9 1_555 0.236 0.128 3.664 0.945 -10.574 43.952 1.225 -0.213 3.548 -13.888 -1.241 45.155 6 11_DT6DA7:DT24DA25_22 1 6 ? 2 25 ? 1 7 ? 2 24 ? 1 A DA 7 1_555 B DT 9 1_555 A DT 9 1_555 B DA 7 1_555 0.142 0.484 7.015 0.564 22.394 69.407 -1.207 -0.079 6.886 19.172 -0.483 72.499 7 11_DA7DT9:DA22DT24_22 1 7 ? 2 24 ? 1 9 ? 2 22 ? 1 A DT 9 1_555 B DA 7 1_555 A DT 10 1_555 B DA 6 1_555 0.733 -0.529 3.638 0.451 -20.979 38.154 1.663 -0.941 3.472 -29.530 -0.634 43.355 8 11_DT9DT10:DA21DA22_22 1 9 ? 2 22 ? 1 10 ? 2 21 ? 1 A DT 10 1_555 B DA 6 1_555 A DA 11 1_555 B DT 5 1_555 0.214 0.216 3.397 0.097 -11.245 45.079 1.258 -0.263 3.257 -14.403 -0.124 46.389 9 11_DT10DA11:DT20DA21_22 1 10 ? 2 21 ? 1 11 ? 2 20 ? 1 A DA 11 1_555 B DT 5 1_555 A DA 12 1_555 B DT 4 1_555 -0.576 -0.295 3.427 -0.888 -11.308 39.765 0.876 0.716 3.395 -16.228 1.275 41.288 10 11_DA11DA12:DT19DT20_22 1 11 ? 2 20 ? 1 12 ? 2 19 ? 1 A DA 12 1_555 B DT 4 1_555 A DT 13 1_555 B DA 3 1_555 -0.414 -0.556 3.526 0.426 -10.177 33.893 0.742 0.751 3.536 -16.987 -0.710 35.347 11 11_DA12DT13:DA18DT19_22 1 12 ? 2 19 ? 1 13 ? 2 18 ? 1 A DT 13 1_555 B DA 3 1_555 A DT 14 1_555 B DA 2 1_555 0.742 -0.606 3.336 1.028 -6.859 35.429 0.033 -1.046 3.410 -11.139 -1.669 36.080 12 11_DT13DT14:DA17DA18_22 1 13 ? 2 18 ? 1 14 ? 2 17 ? 1 A DT 14 1_555 B DA 2 1_555 A DA 15 1_555 B DT 1 1_555 0.194 -0.008 4.418 -1.573 -20.292 44.367 2.117 -0.401 4.051 -25.351 1.966 48.598 13 11_DT14DA15:DT16DA17_22 1 14 ? 2 17 ? 1 15 ? 2 16 ? # _pdbx_nmr_spectrometer.field_strength 950 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _atom_sites.entry_id 2RVP _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol AG C H N O P # loop_