HEADER ISOMERASE 08-MAR-97 2UDP TITLE UDP-GALACTOSE 4-EPIMERASE COMPLEXED WITH UDP-PHENOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GALACTOSE 4-EPIMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EPIMERASE; COMPND 5 EC: 5.1.3.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 CELL_LINE: BL21; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYSS CELLS KEYWDS UDP-GALACTOSE, EPIMERASE, ISOMERASE, GALACTOSE METABOLISM EXPDTA X-RAY DIFFRACTION AUTHOR J.B.THODEN,A.M.GULICK,H.M.HOLDEN REVDAT 4 21-FEB-24 2UDP 1 REMARK LINK REVDAT 3 27-MAY-15 2UDP 1 AUTHOR VERSN REVDAT 2 24-FEB-09 2UDP 1 VERSN REVDAT 1 18-MAR-98 2UDP 0 SPRSDE 18-MAR-98 2UDP 1UDP JRNL AUTH J.B.THODEN,P.A.FREY,H.M.HOLDEN JRNL TITL HIGH-RESOLUTION X-RAY STRUCTURE OF UDP-GALACTOSE 4-EPIMERASE JRNL TITL 2 COMPLEXED WITH UDP-PHENOL. JRNL REF PROTEIN SCI. V. 5 2149 1996 JRNL REFN ISSN 0961-8368 JRNL PMID 8931134 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 68170 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5252 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 155 REMARK 3 SOLVENT ATOMS : 887 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.011 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.200 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : 15.000; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.008 ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : 0.014 ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TNT REMARK 4 REMARK 4 2UDP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178719. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 87.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS HI-STAR REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALIBRE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68170 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.30000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.30000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 610 O HOH B 726 2.03 REMARK 500 O HOH A 562 O HOH A 655 2.08 REMARK 500 O HOH A 445 O HOH A 447 2.08 REMARK 500 O HOH B 433 O HOH B 769 2.10 REMARK 500 O HOH B 596 O HOH B 746 2.13 REMARK 500 O HOH B 708 O HOH B 800 2.13 REMARK 500 O HOH A 563 O HOH A 564 2.15 REMARK 500 O HOH A 449 O HOH B 755 2.15 REMARK 500 OE1 GLN B 22 O HOH B 796 2.16 REMARK 500 O HOH B 751 O HOH B 786 2.18 REMARK 500 O HOH B 587 O HOH B 690 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 56 CD GLU A 56 OE2 0.071 REMARK 500 GLU A 88 CD GLU A 88 OE1 0.068 REMARK 500 GLU A 157 CD GLU A 157 OE1 0.074 REMARK 500 GLU A 191 CD GLU A 191 OE1 0.067 REMARK 500 GLU A 309 CD GLU A 309 OE1 0.067 REMARK 500 GLU B 88 CD GLU B 88 OE1 0.071 REMARK 500 GLU B 225 CD GLU B 225 OE1 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 26 CB - CG - OD1 ANGL. DEV. = -9.7 DEGREES REMARK 500 ASP A 26 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 58 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 58 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP A 71 CB - CG - OD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP A 71 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 SER A 124 N - CA - CB ANGL. DEV. = -12.8 DEGREES REMARK 500 ASP A 130 CB - CG - OD1 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP A 130 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 162 CB - CG - OD1 ANGL. DEV. = -7.5 DEGREES REMARK 500 ASP A 162 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 169 CB - CG - OD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP A 188 CB - CG - OD1 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 192 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 TYR A 203 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 213 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 TYR A 222 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP A 226 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 226 CB - CG - OD2 ANGL. DEV. = -8.9 DEGREES REMARK 500 ASP A 232 CB - CG - OD1 ANGL. DEV. = -8.2 DEGREES REMARK 500 ASP A 232 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 TYR A 259 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP A 271 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 302 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 319 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 319 CB - CG - OD2 ANGL. DEV. = -8.4 DEGREES REMARK 500 ASP A 324 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG B 2 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 GLN B 22 CA - CB - CG ANGL. DEV. = -13.7 DEGREES REMARK 500 ASP B 31 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP B 31 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP B 71 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG B 106 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASP B 130 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP B 162 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP B 169 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP B 169 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP B 188 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP B 192 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG B 212 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 212 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP B 226 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 226 CB - CG - OD2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ASP B 238 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 238 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP B 241 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP B 271 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 LYS B 282 N - CA - CB ANGL. DEV. = 11.0 DEGREES REMARK 500 TYR B 286 CB - CG - CD1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP B 295 CB - CG - OD1 ANGL. DEV. = 7.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 59 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 84 14.36 -140.06 REMARK 500 PHE A 178 -101.83 -99.57 REMARK 500 LEU A 200 -71.26 -60.06 REMARK 500 ASN B 35 24.66 -144.21 REMARK 500 LYS B 84 13.15 -146.01 REMARK 500 PRO B 168 -4.22 -52.50 REMARK 500 PHE B 178 -101.74 -105.16 REMARK 500 TYR B 222 136.71 -36.74 REMARK 500 PRO B 223 27.34 -60.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 136 0.06 SIDE CHAIN REMARK 500 TYR B 299 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 411 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 91 OE1 REMARK 620 2 HOH A 440 O 106.4 REMARK 620 3 HOH A 441 O 85.4 167.7 REMARK 620 4 HOH A 616 O 90.9 91.4 85.0 REMARK 620 5 HOH A 694 O 72.5 96.4 90.2 163.1 REMARK 620 6 HOH B 413 O 172.2 80.5 87.5 85.2 110.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPP A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPP B 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 410 DBREF 2UDP A 1 338 UNP P09147 GALE_ECOLI 1 338 DBREF 2UDP B 1 338 UNP P09147 GALE_ECOLI 1 338 SEQRES 1 A 338 MET ARG VAL LEU VAL THR GLY GLY SER GLY TYR ILE GLY SEQRES 2 A 338 SER HIS THR CYS VAL GLN LEU LEU GLN ASN GLY HIS ASP SEQRES 3 A 338 VAL ILE ILE LEU ASP ASN LEU CYS ASN SER LYS ARG SER SEQRES 4 A 338 VAL LEU PRO VAL ILE GLU ARG LEU GLY GLY LYS HIS PRO SEQRES 5 A 338 THR PHE VAL GLU GLY ASP ILE ARG ASN GLU ALA LEU MET SEQRES 6 A 338 THR GLU ILE LEU HIS ASP HIS ALA ILE ASP THR VAL ILE SEQRES 7 A 338 HIS PHE ALA GLY LEU LYS ALA VAL GLY GLU SER VAL GLN SEQRES 8 A 338 LYS PRO LEU GLU TYR TYR ASP ASN ASN VAL ASN GLY THR SEQRES 9 A 338 LEU ARG LEU ILE SER ALA MET ARG ALA ALA ASN VAL LYS SEQRES 10 A 338 ASN PHE ILE PHE SER SER SER ALA THR VAL TYR GLY ASP SEQRES 11 A 338 GLN PRO LYS ILE PRO TYR VAL GLU SER PHE PRO THR GLY SEQRES 12 A 338 THR PRO GLN SER PRO TYR GLY LYS SER LYS LEU MET VAL SEQRES 13 A 338 GLU GLN ILE LEU THR ASP LEU GLN LYS ALA GLN PRO ASP SEQRES 14 A 338 TRP SER ILE ALA LEU LEU ARG TYR PHE ASN PRO VAL GLY SEQRES 15 A 338 ALA HIS PRO SER GLY ASP MET GLY GLU ASP PRO GLN GLY SEQRES 16 A 338 ILE PRO ASN ASN LEU MET PRO TYR ILE ALA GLN VAL ALA SEQRES 17 A 338 VAL GLY ARG ARG ASP SER LEU ALA ILE PHE GLY ASN ASP SEQRES 18 A 338 TYR PRO THR GLU ASP GLY THR GLY VAL ARG ASP TYR ILE SEQRES 19 A 338 HIS VAL MET ASP LEU ALA ASP GLY HIS VAL VAL ALA MET SEQRES 20 A 338 GLU LYS LEU ALA ASN LYS PRO GLY VAL HIS ILE TYR ASN SEQRES 21 A 338 LEU GLY ALA GLY VAL GLY ASN SER VAL LEU ASP VAL VAL SEQRES 22 A 338 ASN ALA PHE SER LYS ALA CYS GLY LYS PRO VAL ASN TYR SEQRES 23 A 338 HIS PHE ALA PRO ARG ARG GLU GLY ASP LEU PRO ALA TYR SEQRES 24 A 338 TRP ALA ASP ALA SER LYS ALA ASP ARG GLU LEU ASN TRP SEQRES 25 A 338 ARG VAL THR ARG THR LEU ASP GLU MET ALA GLN ASP THR SEQRES 26 A 338 TRP HIS TRP GLN SER ARG HIS PRO GLN GLY TYR PRO ASP SEQRES 1 B 338 MET ARG VAL LEU VAL THR GLY GLY SER GLY TYR ILE GLY SEQRES 2 B 338 SER HIS THR CYS VAL GLN LEU LEU GLN ASN GLY HIS ASP SEQRES 3 B 338 VAL ILE ILE LEU ASP ASN LEU CYS ASN SER LYS ARG SER SEQRES 4 B 338 VAL LEU PRO VAL ILE GLU ARG LEU GLY GLY LYS HIS PRO SEQRES 5 B 338 THR PHE VAL GLU GLY ASP ILE ARG ASN GLU ALA LEU MET SEQRES 6 B 338 THR GLU ILE LEU HIS ASP HIS ALA ILE ASP THR VAL ILE SEQRES 7 B 338 HIS PHE ALA GLY LEU LYS ALA VAL GLY GLU SER VAL GLN SEQRES 8 B 338 LYS PRO LEU GLU TYR TYR ASP ASN ASN VAL ASN GLY THR SEQRES 9 B 338 LEU ARG LEU ILE SER ALA MET ARG ALA ALA ASN VAL LYS SEQRES 10 B 338 ASN PHE ILE PHE SER SER SER ALA THR VAL TYR GLY ASP SEQRES 11 B 338 GLN PRO LYS ILE PRO TYR VAL GLU SER PHE PRO THR GLY SEQRES 12 B 338 THR PRO GLN SER PRO TYR GLY LYS SER LYS LEU MET VAL SEQRES 13 B 338 GLU GLN ILE LEU THR ASP LEU GLN LYS ALA GLN PRO ASP SEQRES 14 B 338 TRP SER ILE ALA LEU LEU ARG TYR PHE ASN PRO VAL GLY SEQRES 15 B 338 ALA HIS PRO SER GLY ASP MET GLY GLU ASP PRO GLN GLY SEQRES 16 B 338 ILE PRO ASN ASN LEU MET PRO TYR ILE ALA GLN VAL ALA SEQRES 17 B 338 VAL GLY ARG ARG ASP SER LEU ALA ILE PHE GLY ASN ASP SEQRES 18 B 338 TYR PRO THR GLU ASP GLY THR GLY VAL ARG ASP TYR ILE SEQRES 19 B 338 HIS VAL MET ASP LEU ALA ASP GLY HIS VAL VAL ALA MET SEQRES 20 B 338 GLU LYS LEU ALA ASN LYS PRO GLY VAL HIS ILE TYR ASN SEQRES 21 B 338 LEU GLY ALA GLY VAL GLY ASN SER VAL LEU ASP VAL VAL SEQRES 22 B 338 ASN ALA PHE SER LYS ALA CYS GLY LYS PRO VAL ASN TYR SEQRES 23 B 338 HIS PHE ALA PRO ARG ARG GLU GLY ASP LEU PRO ALA TYR SEQRES 24 B 338 TRP ALA ASP ALA SER LYS ALA ASP ARG GLU LEU ASN TRP SEQRES 25 B 338 ARG VAL THR ARG THR LEU ASP GLU MET ALA GLN ASP THR SEQRES 26 B 338 TRP HIS TRP GLN SER ARG HIS PRO GLN GLY TYR PRO ASP HET NAD A 340 44 HET UPP A 341 31 HET NA B 411 1 HET NAD B 340 44 HET UPP B 341 31 HET EDO B 410 4 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM UPP PHENYL-URIDINE-5'-DIPHOSPHATE HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 UPP 2(C15 H18 N2 O12 P2) FORMUL 5 NA NA 1+ FORMUL 8 EDO C2 H6 O2 FORMUL 9 HOH *887(H2 O) HELIX 1 1 TYR A 11 GLN A 22 1 12 HELIX 2 2 ARG A 38 GLY A 48 5 11 HELIX 3 3 GLU A 62 ASP A 71 1 10 HELIX 4 4 VAL A 86 GLN A 91 1 6 HELIX 5 5 PRO A 93 ALA A 114 1 22 HELIX 6 6 ALA A 125 TYR A 128 5 4 HELIX 7 7 PRO A 148 ALA A 166 1 19 HELIX 8 8 LEU A 200 ALA A 208 1 9 HELIX 9 9 VAL A 236 LEU A 250 1 15 HELIX 10 10 VAL A 269 CYS A 280 1 12 HELIX 11 11 SER A 304 LEU A 310 1 7 HELIX 12 12 LEU A 318 ARG A 331 1 14 HELIX 13 13 TYR B 11 GLN B 22 1 12 HELIX 14 14 ARG B 38 GLY B 48 5 11 HELIX 15 15 GLU B 62 ASP B 71 1 10 HELIX 16 16 VAL B 86 GLN B 91 1 6 HELIX 17 17 PRO B 93 ALA B 113 1 21 HELIX 18 18 ALA B 125 TYR B 128 5 4 HELIX 19 19 PRO B 148 ALA B 166 1 19 HELIX 20 20 LEU B 200 ALA B 208 1 9 HELIX 21 21 VAL B 236 LEU B 250 1 15 HELIX 22 22 VAL B 269 CYS B 280 1 12 HELIX 23 23 SER B 304 LEU B 310 1 7 HELIX 24 24 LEU B 318 ARG B 331 1 14 SHEET 1 A 7 GLY A 255 LEU A 261 0 SHEET 2 A 7 SER A 171 TYR A 177 1 N ILE A 172 O GLY A 255 SHEET 3 A 7 ASN A 118 SER A 124 1 N PHE A 119 O SER A 171 SHEET 4 A 7 THR A 76 HIS A 79 1 N VAL A 77 O ILE A 120 SHEET 5 A 7 ARG A 2 THR A 6 1 N LEU A 4 O THR A 76 SHEET 6 A 7 ASP A 26 ASP A 31 1 N ASP A 26 O VAL A 3 SHEET 7 A 7 THR A 53 GLU A 56 1 N THR A 53 O ILE A 29 SHEET 1 B 2 ASN A 179 VAL A 181 0 SHEET 2 B 2 TYR A 233 HIS A 235 1 N ILE A 234 O ASN A 179 SHEET 1 C 2 LEU A 215 PHE A 218 0 SHEET 2 C 2 TYR A 286 ALA A 289 1 N HIS A 287 O LEU A 215 SHEET 1 D 7 GLY B 255 LEU B 261 0 SHEET 2 D 7 SER B 171 TYR B 177 1 N ILE B 172 O GLY B 255 SHEET 3 D 7 ASN B 118 SER B 124 1 N PHE B 119 O SER B 171 SHEET 4 D 7 THR B 76 HIS B 79 1 N VAL B 77 O ILE B 120 SHEET 5 D 7 ARG B 2 THR B 6 1 N LEU B 4 O THR B 76 SHEET 6 D 7 ASP B 26 ASP B 31 1 N ASP B 26 O VAL B 3 SHEET 7 D 7 THR B 53 GLU B 56 1 N THR B 53 O ILE B 29 SHEET 1 E 2 ASN B 179 VAL B 181 0 SHEET 2 E 2 TYR B 233 HIS B 235 1 N ILE B 234 O ASN B 179 SHEET 1 F 2 LEU B 215 PHE B 218 0 SHEET 2 F 2 TYR B 286 ALA B 289 1 N HIS B 287 O LEU B 215 LINK OE1 GLN A 91 NA NA B 411 1555 1555 2.37 LINK O HOH A 440 NA NA B 411 1555 1555 2.30 LINK O HOH A 441 NA NA B 411 1555 1555 2.39 LINK O HOH A 616 NA NA B 411 1555 1555 2.39 LINK O HOH A 694 NA NA B 411 1555 1555 2.24 LINK NA NA B 411 O HOH B 413 1555 1555 2.56 CISPEP 1 ILE A 134 PRO A 135 0 6.47 CISPEP 2 ILE B 134 PRO B 135 0 2.07 SITE 1 AC1 6 GLN A 91 HOH A 440 HOH A 441 HOH A 616 SITE 2 AC1 6 HOH A 694 HOH B 413 SITE 1 AC2 30 GLY A 7 GLY A 10 TYR A 11 ILE A 12 SITE 2 AC2 30 ASP A 31 ASN A 32 LEU A 33 CYS A 34 SITE 3 AC2 30 ASN A 35 SER A 36 GLY A 57 ASP A 58 SITE 4 AC2 30 ILE A 59 PHE A 80 ALA A 81 GLY A 82 SITE 5 AC2 30 LYS A 84 ASN A 99 SER A 122 SER A 123 SITE 6 AC2 30 SER A 124 TYR A 149 LYS A 153 TYR A 177 SITE 7 AC2 30 PHE A 178 UPP A 341 HOH A 352 HOH A 368 SITE 8 AC2 30 HOH A 420 HOH A 422 SITE 1 AC3 23 LYS A 84 TYR A 149 ASN A 179 ASN A 198 SITE 2 AC3 23 ASN A 199 LEU A 200 ALA A 216 ILE A 217 SITE 3 AC3 23 PHE A 218 GLY A 229 ARG A 231 TYR A 233 SITE 4 AC3 23 VAL A 269 ARG A 292 ASP A 295 NAD A 340 SITE 5 AC3 23 HOH A 427 HOH A 429 HOH A 492 HOH A 494 SITE 6 AC3 23 HOH A 511 HOH A 550 HOH A 551 SITE 1 AC4 33 GLY B 7 GLY B 10 TYR B 11 ILE B 12 SITE 2 AC4 33 ASP B 31 ASN B 32 LEU B 33 CYS B 34 SITE 3 AC4 33 ASN B 35 SER B 36 GLY B 57 ASP B 58 SITE 4 AC4 33 ILE B 59 PHE B 80 ALA B 81 GLY B 82 SITE 5 AC4 33 LYS B 84 ASN B 99 SER B 122 SER B 123 SITE 6 AC4 33 SER B 124 TYR B 149 LYS B 153 TYR B 177 SITE 7 AC4 33 PHE B 178 UPP B 341 HOH B 435 HOH B 436 SITE 8 AC4 33 HOH B 494 HOH B 496 HOH B 521 HOH B 609 SITE 9 AC4 33 HOH B 726 SITE 1 AC5 22 VAL B 86 ASN B 179 ASN B 198 ASN B 199 SITE 2 AC5 22 LEU B 200 LEU B 215 ALA B 216 ILE B 217 SITE 3 AC5 22 PHE B 218 GLY B 229 ARG B 231 TYR B 233 SITE 4 AC5 22 ARG B 292 ASP B 295 TYR B 299 NAD B 340 SITE 5 AC5 22 HOH B 497 HOH B 553 HOH B 583 HOH B 595 SITE 6 AC5 22 HOH B 663 HOH B 672 SITE 1 AC6 4 ALA A 208 THR B 315 GLU B 320 HOH B 678 CRYST1 76.000 78.700 128.600 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013158 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007776 0.00000