HEADER INHIBITOR 08-MAR-07 2UUZ TITLE ORTHORHOMBIC CRYSTAL FORM OF GAMS FROM BACTERIOPHAGE LAMBDA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOST-NUCLEASE INHIBITOR PROTEIN GAM; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 40-138; COMPND 5 SYNONYM: GAMS; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTERIOPHAGE LAMBDA; SOURCE 3 ORGANISM_TAXID: 10710; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: B834 (DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PKM574 KEYWDS BACTERIOPHAGE LAMBDA, NUCLEASE INHIBITOR, RECBCD INHIBITOR, KEYWDS 2 PUTATIVE DNA MIMIC, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR R.I.COURT,N.COOK,K.SAIKRISHNAN,D.B.WIGLEY REVDAT 3 24-FEB-09 2UUZ 1 VERSN REVDAT 2 24-JUL-07 2UUZ 1 JRNL REVDAT 1 12-JUN-07 2UUZ 0 JRNL AUTH R.I.COURT,N.COOK,K.SAIKRISHNAN,D.B.WIGLEY JRNL TITL THE CRYSTAL STRUCTURE OF LAMBDA-GAM PROTEIN JRNL TITL 2 SUGGESTS A MODEL FOR RECBCD INHIBITION. JRNL REF J.MOL.BIOL. V. 371 25 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17544443 JRNL DOI 10.1016/J.JMB.2007.05.037 REMARK 2 REMARK 2 RESOLUTION. 2.3 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.3 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 19530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.2403 REMARK 3 FREE R VALUE : 0.2792 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.7 REMARK 3 FREE R VALUE TEST SET COUNT : 1001 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1449 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 16.087 REMARK 3 B22 (A**2) : -9.471 REMARK 3 B33 (A**2) : -6.617 REMARK 3 B12 (A**2) : 0.000 REMARK 3 B13 (A**2) : 0.000 REMARK 3 B23 (A**2) : 0.000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.347938 REMARK 3 BSOL : 52.0685 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: N-TERMINAL RESIDUES 40-48 OF CHAIN A REMARK 3 AND 40-51 OF CHAIN B ARE DISORDERED. THE C-TERMINAL RESIDUE REMARK 3 (VAL 138) IS DISORDERED IN BOTH CHAINS. REMARK 4 REMARK 4 2UUZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAR-07. REMARK 100 THE PDBE ID CODE IS EBI-31803. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 5 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGING PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19530 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 32.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.25000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: SOLVE, MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.5 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS/HCL, PH 8.5 32-34 % REMARK 280 PEG 4000 700-850 MM LICL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 71.17900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.57350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 71.17900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 19.57350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 40 REMARK 465 MET A 41 REMARK 465 ASN A 42 REMARK 465 ALA A 43 REMARK 465 TYR A 44 REMARK 465 TYR A 45 REMARK 465 ILE A 46 REMARK 465 GLN A 47 REMARK 465 ASP A 48 REMARK 465 ALA B 40 REMARK 465 MET B 41 REMARK 465 ASN B 42 REMARK 465 ALA B 43 REMARK 465 TYR B 44 REMARK 465 TYR B 45 REMARK 465 ILE B 46 REMARK 465 GLN B 47 REMARK 465 ASP B 48 REMARK 465 ARG B 49 REMARK 465 LEU B 50 REMARK 465 GLU B 51 REMARK 465 ALA B 52 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 138 CA C O CB CG1 CG2 REMARK 470 VAL B 138 CA C O CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 70 - O HOH B 2009 1.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2UV1 RELATED DB: PDB REMARK 900 HEXGAONAL CRYSTAL FORM OF GAMS FROM REMARK 900 BACTERIOPHAGE LAMBDA. REMARK 999 REMARK 999 SEQUENCE REMARK 999 CONSTRUCT STARTS AT RESIDUE 40 OF REPORTED SEQUENCE. DBREF 2UUZ A 40 138 UNP P03702 VGAM_LAMBD 40 138 DBREF 2UUZ B 40 138 UNP P03702 VGAM_LAMBD 40 138 SEQADV 2UUZ ILE A 79 UNP P03702 LEU 79 CONFLICT SEQADV 2UUZ ILE B 79 UNP P03702 LEU 79 CONFLICT SEQRES 1 A 99 ALA MET ASN ALA TYR TYR ILE GLN ASP ARG LEU GLU ALA SEQRES 2 A 99 GLN SER TRP ALA ARG HIS TYR GLN GLN LEU ALA ARG GLU SEQRES 3 A 99 GLU LYS GLU ALA GLU LEU ALA ASP ASP MET GLU LYS GLY SEQRES 4 A 99 ILE PRO GLN HIS LEU PHE GLU SER LEU CYS ILE ASP HIS SEQRES 5 A 99 LEU GLN ARG HIS GLY ALA SER LYS LYS SER ILE THR ARG SEQRES 6 A 99 ALA PHE ASP ASP ASP VAL GLU PHE GLN GLU ARG MET ALA SEQRES 7 A 99 GLU HIS ILE ARG TYR MET VAL GLU THR ILE ALA HIS HIS SEQRES 8 A 99 GLN VAL ASP ILE ASP SER GLU VAL SEQRES 1 B 99 ALA MET ASN ALA TYR TYR ILE GLN ASP ARG LEU GLU ALA SEQRES 2 B 99 GLN SER TRP ALA ARG HIS TYR GLN GLN LEU ALA ARG GLU SEQRES 3 B 99 GLU LYS GLU ALA GLU LEU ALA ASP ASP MET GLU LYS GLY SEQRES 4 B 99 ILE PRO GLN HIS LEU PHE GLU SER LEU CYS ILE ASP HIS SEQRES 5 B 99 LEU GLN ARG HIS GLY ALA SER LYS LYS SER ILE THR ARG SEQRES 6 B 99 ALA PHE ASP ASP ASP VAL GLU PHE GLN GLU ARG MET ALA SEQRES 7 B 99 GLU HIS ILE ARG TYR MET VAL GLU THR ILE ALA HIS HIS SEQRES 8 B 99 GLN VAL ASP ILE ASP SER GLU VAL FORMUL 3 HOH *91(H2 O1) HELIX 1 1 ARG A 49 LYS A 77 1 29 HELIX 2 2 PRO A 80 GLN A 93 1 14 HELIX 3 3 ARG A 94 GLY A 96 5 3 HELIX 4 4 SER A 98 ASP A 108 1 11 HELIX 5 5 ASP A 109 SER A 136 1 28 HELIX 6 6 SER B 54 LYS B 77 1 24 HELIX 7 7 PRO B 80 LEU B 92 1 13 HELIX 8 8 GLN B 93 GLY B 96 5 4 HELIX 9 9 SER B 98 ASP B 108 1 11 HELIX 10 10 ASP B 109 SER B 136 1 28 CRYST1 142.358 39.147 44.195 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007025 0.000000 0.000000 0.00000 SCALE2 0.000000 0.025545 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022627 0.00000