HEADER TRANSCRIPTION 29-MAR-07 2UXP TITLE TTGR IN COMPLEX CHLORAMPHENICOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR TTGR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRANSCRIPTIONAL REPRESSOR, TOLUENE EFFLUX PUMP TTGABC COMPND 5 OPERON REPRESSOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 STRAIN: DOT-T1E; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS TRANSCRIPTION, DNA-BINDING, TETR FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR Y.ALGUEL,C.MENG,W.TERAN,T.KRELL,J.L.RAMOS,M.-T.GALLEGOS,X.ZHANG REVDAT 4 13-JUL-11 2UXP 1 VERSN REVDAT 3 24-FEB-09 2UXP 1 VERSN REVDAT 2 22-MAY-07 2UXP 1 JRNL REVDAT 1 08-MAY-07 2UXP 0 JRNL AUTH Y.ALGUEL,C.MENG,W.TERAN,T.KRELL,J.L.RAMOS,M.-T.GALLEGOS, JRNL AUTH 2 X.ZHANG JRNL TITL CRYSTAL STRUCTURES OF MULTIDRUG BINDING PROTEIN TTGR IN JRNL TITL 2 COMPLEX WITH ANTIBIOTICS AND PLANT ANTIMICROBIALS. JRNL REF J.MOL.BIOL. V. 369 829 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17466326 JRNL DOI 10.1016/J.JMB.2007.03.062 REMARK 2 REMARK 2 RESOLUTION. 2.7 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 3 NUMBER OF REFLECTIONS : 11309 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.800 REMARK 3 FREE R VALUE TEST SET COUNT : 957 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 432 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 46.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 34 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3165 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 109 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.64000 REMARK 3 B22 (A**2) : -3.58000 REMARK 3 B33 (A**2) : -1.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.462 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.306 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 33.425 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.869 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3257 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4416 ; 1.484 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 409 ; 4.519 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;40.236 ;23.200 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 546 ;16.479 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;15.094 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 518 ; 0.180 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2451 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1885 ; 0.280 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2278 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 222 ; 0.214 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.219 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.238 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2090 ; 7.060 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3239 ; 8.891 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1294 ; 1.537 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1177 ; 2.152 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 53 REMARK 3 ORIGIN FOR THE GROUP (A): -1.4595 10.4222 19.7671 REMARK 3 T TENSOR REMARK 3 T11: -0.0913 T22: -0.1334 REMARK 3 T33: -0.0775 T12: -0.0126 REMARK 3 T13: 0.0607 T23: 0.0757 REMARK 3 L TENSOR REMARK 3 L11: 5.4630 L22: 5.2072 REMARK 3 L33: 0.9878 L12: 2.9824 REMARK 3 L13: -0.3945 L23: -0.3104 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: -0.3731 S13: -0.2540 REMARK 3 S21: 0.4163 S22: -0.0727 S23: 0.1786 REMARK 3 S31: 0.0928 S32: 0.0208 S33: 0.0705 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 54 B 210 REMARK 3 ORIGIN FOR THE GROUP (A): 1.7164 36.1731 12.1636 REMARK 3 T TENSOR REMARK 3 T11: -0.0302 T22: -0.1538 REMARK 3 T33: -0.1593 T12: 0.0553 REMARK 3 T13: -0.0352 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.9114 L22: 1.8459 REMARK 3 L33: 2.1623 L12: -0.2611 REMARK 3 L13: -0.6704 L23: 0.3325 REMARK 3 S TENSOR REMARK 3 S11: 0.1418 S12: -0.0155 S13: 0.0394 REMARK 3 S21: -0.0476 S22: -0.1569 S23: 0.1371 REMARK 3 S31: -0.3458 S32: -0.0717 S33: 0.0151 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1035 10.0192 -10.6312 REMARK 3 T TENSOR REMARK 3 T11: -0.0019 T22: -0.0374 REMARK 3 T33: -0.0637 T12: 0.1344 REMARK 3 T13: 0.1925 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 4.0901 L22: 3.8820 REMARK 3 L33: 5.7867 L12: -0.5899 REMARK 3 L13: -4.4463 L23: -0.5321 REMARK 3 S TENSOR REMARK 3 S11: -0.5258 S12: 0.0926 S13: -0.7053 REMARK 3 S21: -0.3442 S22: -0.3806 S23: 0.0021 REMARK 3 S31: 1.1496 S32: 0.2842 S33: 0.9064 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 54 A 210 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0360 35.5851 -2.5443 REMARK 3 T TENSOR REMARK 3 T11: -0.0428 T22: -0.1425 REMARK 3 T33: -0.1337 T12: -0.0245 REMARK 3 T13: -0.0001 T23: 0.0336 REMARK 3 L TENSOR REMARK 3 L11: 0.5874 L22: 1.7518 REMARK 3 L33: 1.9048 L12: 0.6240 REMARK 3 L13: -0.4395 L23: -0.3387 REMARK 3 S TENSOR REMARK 3 S11: 0.0611 S12: 0.0689 S13: -0.0835 REMARK 3 S21: -0.1222 S22: -0.0669 S23: -0.1372 REMARK 3 S31: -0.3127 S32: 0.1044 S33: 0.0058 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1211 A 1211 REMARK 3 RESIDUE RANGE : B 1211 B 1211 REMARK 3 ORIGIN FOR THE GROUP (A): 7.8361 35.8619 5.0408 REMARK 3 T TENSOR REMARK 3 T11: -0.0091 T22: 0.0004 REMARK 3 T33: 0.0315 T12: -0.1752 REMARK 3 T13: -0.0416 T23: 0.1607 REMARK 3 L TENSOR REMARK 3 L11: 47.5427 L22: 0.0644 REMARK 3 L33: 65.4543 L12: 1.6777 REMARK 3 L13: -52.0281 L23: -1.6250 REMARK 3 S TENSOR REMARK 3 S11: -1.3290 S12: -2.3757 S13: 1.5538 REMARK 3 S21: -0.6248 S22: 1.6533 S23: -0.0564 REMARK 3 S31: 4.8202 S32: 1.3137 S33: -0.3242 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2001 A 2051 REMARK 3 RESIDUE RANGE : B 2001 B 2058 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0844 29.1333 4.8230 REMARK 3 T TENSOR REMARK 3 T11: 0.4130 T22: 0.5663 REMARK 3 T33: 0.5084 T12: 0.0264 REMARK 3 T13: -0.0484 T23: 0.0476 REMARK 3 L TENSOR REMARK 3 L11: 0.2819 L22: 0.1489 REMARK 3 L33: 0.9928 L12: 0.1316 REMARK 3 L13: -0.0875 L23: 0.2499 REMARK 3 S TENSOR REMARK 3 S11: -0.0027 S12: 0.0393 S13: 0.0845 REMARK 3 S21: -0.0160 S22: -0.0301 S23: -0.0166 REMARK 3 S31: -0.0526 S32: -0.0609 S33: 0.0328 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2UXP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAR-07. REMARK 100 THE PDBE ID CODE IS EBI-32118. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9765 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12226 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 37.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.1 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 0.1 M BIS-TRIS PH REMARK 280 6.5, 20%(V/V) REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 23.22850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 115.33650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.22850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 115.33650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 ARG B 3 REMARK 465 ARG B 4 REMARK 465 THR B 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 5 OG1 CG2 REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 GLU A 7 CG CD OE1 OE2 REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 GLN A 10 CG CD OE1 NE2 REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 27 CG CD NE CZ NH1 NH2 REMARK 470 THR A 33 OG1 CG2 REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 LEU A 40 CG CD1 CD2 REMARK 470 ARG A 45 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 68 CG CD OE1 OE2 REMARK 470 ARG A 75 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 83 CG1 CG2 REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 GLU B 7 CG CD OE1 OE2 REMARK 470 GLU B 8 CG CD OE1 OE2 REMARK 470 GLN B 10 CG CD OE1 NE2 REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 GLN B 15 CG CD OE1 NE2 REMARK 470 ARG B 27 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 80 CG CD OE1 OE2 REMARK 470 ASP B 81 CG OD1 OD2 REMARK 470 LYS B 139 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 157 CD GLU A 157 OE1 0.071 REMARK 500 GLU A 157 CD GLU A 157 OE2 0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU B 7 CB - CA - C ANGL. DEV. = 33.3 DEGREES REMARK 500 GLU B 7 N - CA - C ANGL. DEV. = -21.9 DEGREES REMARK 500 GLU B 8 N - CA - CB ANGL. DEV. = -23.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 31 47.80 -100.51 REMARK 500 ASN A 53 -77.84 -63.01 REMARK 500 GLU A 161 -76.60 -47.43 REMARK 500 GLU B 7 -164.05 -105.47 REMARK 500 GLU B 8 -75.86 -3.89 REMARK 500 ALA B 9 108.50 -168.76 REMARK 500 ASN B 54 -176.54 -174.47 REMARK 500 LYS B 116 31.34 -142.99 REMARK 500 CYS B 117 88.82 -152.88 REMARK 500 ASP B 121 -2.06 -56.78 REMARK 500 ARG B 150 -19.98 -48.59 REMARK 500 PRO B 155 151.28 -42.95 REMARK 500 ASP B 159 96.80 -57.62 REMARK 500 VAL B 185 87.09 -155.10 REMARK 500 ASP B 186 69.17 -60.86 REMARK 500 LEU B 188 -72.03 -62.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 6 GLU B 7 -91.10 REMARK 500 GLU B 7 GLU B 8 -109.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CLM A1211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CLM B1211 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2UXH RELATED DB: PDB REMARK 900 TTGR IN COMPLEX WITH QUERCETIN REMARK 900 RELATED ID: 2UXI RELATED DB: PDB REMARK 900 PHLORETIN IN COMPLEX WITH TTGR REMARK 900 RELATED ID: 2UXO RELATED DB: PDB REMARK 900 TTGR IN COMPLEX WITH TETRACYCLINE REMARK 900 RELATED ID: 2UXU RELATED DB: PDB REMARK 900 TTGR IN COMPLEX WITH NARINGENIN DBREF 2UXP A 1 210 UNP Q9AIU0 TTGR_PSEPU 1 210 DBREF 2UXP B 1 210 UNP Q9AIU0 TTGR_PSEPU 1 210 SEQRES 1 A 210 MET VAL ARG ARG THR LYS GLU GLU ALA GLN GLU THR ARG SEQRES 2 A 210 ALA GLN ILE ILE GLU ALA ALA GLU ARG ALA PHE TYR LYS SEQRES 3 A 210 ARG GLY VAL ALA ARG THR THR LEU ALA ASP ILE ALA GLU SEQRES 4 A 210 LEU ALA GLY VAL THR ARG GLY ALA ILE TYR TRP HIS PHE SEQRES 5 A 210 ASN ASN LYS ALA GLU LEU VAL GLN ALA LEU LEU ASP SER SEQRES 6 A 210 LEU HIS GLU THR HIS ASP HIS LEU ALA ARG ALA SER GLU SEQRES 7 A 210 SER GLU ASP GLU VAL ASP PRO LEU GLY CYS MET ARG LYS SEQRES 8 A 210 LEU LEU LEU GLN VAL PHE ASN GLU LEU VAL LEU ASP ALA SEQRES 9 A 210 ARG THR ARG ARG ILE ASN GLU ILE LEU HIS HIS LYS CYS SEQRES 10 A 210 GLU PHE THR ASP ASP MET CYS GLU ILE ARG GLN GLN ARG SEQRES 11 A 210 GLN SER ALA VAL LEU ASP CYS HIS LYS GLY ILE THR LEU SEQRES 12 A 210 ALA LEU ALA ASN ALA VAL ARG ARG GLY GLN LEU PRO GLY SEQRES 13 A 210 GLU LEU ASP ALA GLU ARG ALA ALA VAL ALA MET PHE ALA SEQRES 14 A 210 TYR VAL ASP GLY LEU ILE ARG ARG TRP LEU LEU LEU PRO SEQRES 15 A 210 ASP SER VAL ASP LEU LEU GLY ASP VAL GLU LYS TRP VAL SEQRES 16 A 210 ASP THR GLY LEU ASP MET LEU ARG LEU SER PRO ALA LEU SEQRES 17 A 210 ARG LYS SEQRES 1 B 210 MET VAL ARG ARG THR LYS GLU GLU ALA GLN GLU THR ARG SEQRES 2 B 210 ALA GLN ILE ILE GLU ALA ALA GLU ARG ALA PHE TYR LYS SEQRES 3 B 210 ARG GLY VAL ALA ARG THR THR LEU ALA ASP ILE ALA GLU SEQRES 4 B 210 LEU ALA GLY VAL THR ARG GLY ALA ILE TYR TRP HIS PHE SEQRES 5 B 210 ASN ASN LYS ALA GLU LEU VAL GLN ALA LEU LEU ASP SER SEQRES 6 B 210 LEU HIS GLU THR HIS ASP HIS LEU ALA ARG ALA SER GLU SEQRES 7 B 210 SER GLU ASP GLU VAL ASP PRO LEU GLY CYS MET ARG LYS SEQRES 8 B 210 LEU LEU LEU GLN VAL PHE ASN GLU LEU VAL LEU ASP ALA SEQRES 9 B 210 ARG THR ARG ARG ILE ASN GLU ILE LEU HIS HIS LYS CYS SEQRES 10 B 210 GLU PHE THR ASP ASP MET CYS GLU ILE ARG GLN GLN ARG SEQRES 11 B 210 GLN SER ALA VAL LEU ASP CYS HIS LYS GLY ILE THR LEU SEQRES 12 B 210 ALA LEU ALA ASN ALA VAL ARG ARG GLY GLN LEU PRO GLY SEQRES 13 B 210 GLU LEU ASP ALA GLU ARG ALA ALA VAL ALA MET PHE ALA SEQRES 14 B 210 TYR VAL ASP GLY LEU ILE ARG ARG TRP LEU LEU LEU PRO SEQRES 15 B 210 ASP SER VAL ASP LEU LEU GLY ASP VAL GLU LYS TRP VAL SEQRES 16 B 210 ASP THR GLY LEU ASP MET LEU ARG LEU SER PRO ALA LEU SEQRES 17 B 210 ARG LYS HET CLM A1211 20 HET CLM B1211 20 HETNAM CLM CHLORAMPHENICOL FORMUL 3 CLM 2(C11 H12 CL2 N2 O5) FORMUL 5 HOH *109(H2 O) HELIX 1 1 LYS A 6 GLY A 28 1 23 HELIX 2 2 THR A 33 GLY A 42 1 10 HELIX 3 3 THR A 44 PHE A 52 1 9 HELIX 4 4 ASN A 54 THR A 69 1 16 HELIX 5 5 HIS A 70 SER A 79 1 10 HELIX 6 6 ASP A 84 ASP A 103 1 20 HELIX 7 7 ASP A 103 LYS A 116 1 14 HELIX 8 8 THR A 120 ASP A 122 5 3 HELIX 9 9 MET A 123 ARG A 150 1 28 HELIX 10 10 ASP A 159 LEU A 181 1 23 HELIX 11 11 ASP A 190 SER A 205 1 16 HELIX 12 12 PRO A 206 LEU A 208 5 3 HELIX 13 13 GLU B 11 GLY B 28 1 18 HELIX 14 14 THR B 33 GLY B 42 1 10 HELIX 15 15 THR B 44 TRP B 50 1 7 HELIX 16 16 ASN B 54 LEU B 66 1 13 HELIX 17 17 HIS B 67 THR B 69 5 3 HELIX 18 18 HIS B 70 SER B 79 1 10 HELIX 19 19 ASP B 84 ASP B 103 1 20 HELIX 20 20 ASP B 103 LYS B 116 1 14 HELIX 21 21 MET B 123 ARG B 151 1 29 HELIX 22 22 ASP B 159 LEU B 181 1 23 HELIX 23 23 PRO B 182 VAL B 185 5 4 HELIX 24 24 ASP B 190 SER B 205 1 16 HELIX 25 25 PRO B 206 ARG B 209 5 4 SITE 1 AC1 6 ALA A 74 LEU A 93 CYS A 137 ILE A 141 SITE 2 AC1 6 PHE A 168 VAL A 171 SITE 1 AC2 13 HIS B 67 HIS B 70 ALA B 74 SER B 77 SITE 2 AC2 13 GLU B 78 VAL B 96 CYS B 137 ILE B 141 SITE 3 AC2 13 VAL B 171 HOH B2014 HOH B2056 HOH B2057 SITE 4 AC2 13 HOH B2058 CRYST1 46.457 230.673 44.006 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021525 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004335 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022724 0.00000