HEADER RNA-BINDING PROTEIN 02-APR-07 2UY1 TITLE CRYSTAL STRUCTURE OF CSTF-77 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLEAVAGE STIMULATION FACTOR 77; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SIMILARITY TO SUPPRESSOR OF FORKED PROTEIN, MRNA COMPND 5 STABILITY; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CLEAVAGE STIMULATION FACTOR 77; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: SIMILARITY TO SUPPRESSOR OF FORKED PROTEIN, MRNA COMPND 11 STABILITY; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENCEPHALITOZOON CUNICULI; SOURCE 3 ORGANISM_TAXID: 6035; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: ENCEPHALITOZOON CUNICULI; SOURCE 8 ORGANISM_TAXID: 6035; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.LEGRAND,N.PINAUD,L.MINVIELLE-SEBASTIA,S.FRIBOURG REVDAT 2 24-FEB-09 2UY1 1 VERSN REVDAT 1 03-JUL-07 2UY1 0 JRNL AUTH P.LEGRAND,N.PINAUD,L.MINVIELLE-SEBASTIA,S.FRIBOURG JRNL TITL THE STRUCTURE OF THE CSTF-77 HOMODIMER PROVIDES JRNL TITL 2 INSIGHTS INTO CSTF ASSEMBLY. JRNL REF NUCLEIC ACIDS RES. V. 35 4515 2007 JRNL REFN ISSN 0305-1048 JRNL PMID 17584787 JRNL DOI 10.1093/NAR/GKM458 REMARK 2 REMARK 2 RESOLUTION. 2.0 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 91.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 74487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3926 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5168 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 262 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6903 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.85000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.183 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.874 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7070 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9493 ; 1.898 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 817 ; 7.634 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 365 ;33.986 ;23.205 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1312 ;17.466 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;20.515 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 974 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5360 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3489 ; 0.231 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4805 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 383 ; 0.202 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.213 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.177 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4264 ; 1.256 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6545 ; 1.882 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3336 ; 2.993 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2945 ; 4.246 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2UY1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-APR-07. REMARK 100 THE PDBE ID CODE IS EBI-32072. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77953 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 91.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 74.14000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ALA A 3 REMARK 465 GLU A 4 REMARK 465 GLU A 5 REMARK 465 LYS A 6 REMARK 465 MET A 7 REMARK 465 GLY A 8 REMARK 465 VAL A 9 REMARK 465 GLU A 10 REMARK 465 LEU A 11 REMARK 465 GLN A 62 REMARK 465 LYS A 63 REMARK 465 LYS A 64 REMARK 465 PHE A 65 REMARK 465 MET A 271 REMARK 465 GLY A 272 REMARK 465 GLU A 273 REMARK 465 ALA A 274 REMARK 465 GLU A 275 REMARK 465 SER A 276 REMARK 465 ALA A 277 REMARK 465 GLU A 278 REMARK 465 LYS A 279 REMARK 465 VAL A 280 REMARK 465 GLU A 427 REMARK 465 HIS A 428 REMARK 465 ASN A 466 REMARK 465 LEU A 467 REMARK 465 PRO A 468 REMARK 465 LYS A 469 REMARK 465 ILE A 470 REMARK 465 SER A 471 REMARK 465 GLN A 472 REMARK 465 GLN A 473 REMARK 465 ASN A 474 REMARK 465 ASN A 475 REMARK 465 VAL A 476 REMARK 465 LEU A 477 REMARK 465 SER A 478 REMARK 465 ASN A 479 REMARK 465 LEU A 480 REMARK 465 ARG A 481 REMARK 465 VAL A 482 REMARK 465 GLU A 483 REMARK 465 LYS A 484 REMARK 465 VAL A 485 REMARK 465 ILE A 486 REMARK 465 SER A 487 REMARK 465 LEU A 488 REMARK 465 LEU A 489 REMARK 465 LYS A 490 REMARK 465 SER A 491 REMARK 465 VAL A 492 REMARK 465 GLN A 493 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 ALA B 3 REMARK 465 GLU B 4 REMARK 465 GLU B 5 REMARK 465 LYS B 6 REMARK 465 MET B 7 REMARK 465 GLY B 8 REMARK 465 VAL B 9 REMARK 465 GLU B 10 REMARK 465 LEU B 11 REMARK 465 VAL B 60 REMARK 465 SER B 61 REMARK 465 GLN B 62 REMARK 465 LYS B 63 REMARK 465 LYS B 64 REMARK 465 PHE B 65 REMARK 465 LYS B 66 REMARK 465 LEU B 67 REMARK 465 ILE B 92 REMARK 465 GLU B 93 REMARK 465 GLU B 94 REMARK 465 LEU B 95 REMARK 465 GLY B 96 REMARK 465 LYS B 97 REMARK 465 ILE B 98 REMARK 465 GLU B 99 REMARK 465 ASP B 100 REMARK 465 GLU B 101 REMARK 465 GLN B 102 REMARK 465 THR B 103 REMARK 465 ARG B 104 REMARK 465 ILE B 105 REMARK 465 GLU B 106 REMARK 465 LYS B 107 REMARK 465 ILE B 108 REMARK 465 GLU B 131 REMARK 465 ASN B 132 REMARK 465 PHE B 133 REMARK 465 GLU B 134 REMARK 465 LEU B 135 REMARK 465 GLU B 136 REMARK 465 LEU B 137 REMARK 465 ASN B 138 REMARK 465 LYS B 139 REMARK 465 ILE B 140 REMARK 465 THR B 141 REMARK 465 GLY B 142 REMARK 465 LYS B 143 REMARK 465 LYS B 144 REMARK 465 ILE B 145 REMARK 465 VAL B 146 REMARK 465 GLY B 147 REMARK 465 ASP B 148 REMARK 465 GLY B 186 REMARK 465 MET B 187 REMARK 465 LYS B 188 REMARK 465 LEU B 189 REMARK 465 GLY B 190 REMARK 465 GLY B 191 REMARK 465 MET B 271 REMARK 465 GLY B 272 REMARK 465 GLU B 273 REMARK 465 ALA B 274 REMARK 465 GLU B 275 REMARK 465 SER B 276 REMARK 465 ALA B 277 REMARK 465 GLU B 278 REMARK 465 GLU B 427 REMARK 465 HIS B 428 REMARK 465 ASN B 429 REMARK 465 ASN B 456 REMARK 465 SER B 457 REMARK 465 ARG B 458 REMARK 465 LEU B 459 REMARK 465 LEU B 460 REMARK 465 ASP B 461 REMARK 465 GLU B 462 REMARK 465 PHE B 463 REMARK 465 MET B 464 REMARK 465 GLU B 465 REMARK 465 ASN B 466 REMARK 465 LEU B 467 REMARK 465 PRO B 468 REMARK 465 LYS B 469 REMARK 465 ILE B 470 REMARK 465 SER B 471 REMARK 465 GLN B 472 REMARK 465 GLN B 473 REMARK 465 ASN B 474 REMARK 465 ASN B 475 REMARK 465 VAL B 476 REMARK 465 LEU B 477 REMARK 465 SER B 478 REMARK 465 ASN B 479 REMARK 465 LEU B 480 REMARK 465 ARG B 481 REMARK 465 VAL B 482 REMARK 465 GLU B 483 REMARK 465 LYS B 484 REMARK 465 VAL B 485 REMARK 465 ILE B 486 REMARK 465 SER B 487 REMARK 465 LEU B 488 REMARK 465 LEU B 489 REMARK 465 LYS B 490 REMARK 465 SER B 491 REMARK 465 VAL B 492 REMARK 465 GLN B 493 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 281 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 192 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 34 - OH TYR A 56 2.13 REMARK 500 O PRO B 165 - O ARG B 168 1.96 REMARK 500 OE1 GLU B 370 - OH TYR B 393 2.17 REMARK 500 OE2 GLU B 392 - O HOH B 2068 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 251 C TYR A 252 N -0.305 REMARK 500 TYR A 331 CD2 TYR A 331 CE2 0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 202 CB - CG - ND1 ANGL. DEV. = 9.6 DEGREES REMARK 500 HIS A 350 CB - CG - ND1 ANGL. DEV. = 9.5 DEGREES REMARK 500 LEU A 356 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 LEU A 365 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 ARG A 404 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 404 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 HIS B 292 CB - CG - ND1 ANGL. DEV. = 9.0 DEGREES REMARK 500 LEU B 302 CB - CG - CD2 ANGL. DEV. = -10.3 DEGREES REMARK 500 HIS B 320 CB - CG - ND1 ANGL. DEV. = 10.1 DEGREES REMARK 500 HIS B 350 CB - CG - ND1 ANGL. DEV. = 9.6 DEGREES REMARK 500 LEU B 356 CA - CB - CG ANGL. DEV. = 22.8 DEGREES REMARK 500 HIS B 440 CB - CG - ND1 ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 78 56.84 -101.97 REMARK 500 LYS A 97 8.18 52.53 REMARK 500 GLU A 99 108.96 -56.32 REMARK 500 ASP A 100 91.38 121.95 REMARK 500 ARG A 104 -70.29 -48.06 REMARK 500 ASN A 138 112.18 -175.76 REMARK 500 ASP A 257 70.79 53.62 REMARK 500 ASN A 314 53.32 12.46 REMARK 500 LEU A 449 -123.59 56.45 REMARK 500 LEU B 49 -61.32 110.03 REMARK 500 TRP B 170 140.80 -34.56 REMARK 500 SER B 171 -151.59 -78.16 REMARK 500 GLN B 431 -77.23 -80.88 REMARK 500 LEU B 449 -125.29 53.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 96 LYS A 97 59.61 REMARK 500 LYS A 97 ILE A 98 149.91 REMARK 500 LEU A 312 GLY A 313 82.23 REMARK 500 ASN A 314 GLU A 315 84.54 REMARK 500 ARG B 109 ASN B 110 85.67 REMARK 500 ARG B 114 ALA B 115 142.92 REMARK 500 TRP B 170 SER B 171 -138.92 REMARK 500 SER B 171 VAL B 172 60.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LEU A 312 24.6 L L OUTSIDE RANGE REMARK 500 ASN A 314 24.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): DBREF 2UY1 A 1 493 UNP Q8SWC5 Q8SWC5_ENCCU 1 493 DBREF 2UY1 B 1 493 UNP Q8SWC5 Q8SWC5_ENCCU 1 493 SEQADV 2UY1 GLU A 95 UNP Q8SWC5 LEU 95 CONFLICT SEQADV 2UY1 TRP B 42 UNP Q8SWC5 LYS 42 CONFLICT SEQADV 2UY1 PHE B 68 UNP Q8SWC5 TYR 68 CONFLICT SEQADV 2UY1 PHE B 88 UNP Q8SWC5 TYR 88 CONFLICT SEQADV 2UY1 LEU B 152 UNP Q8SWC5 ILE 152 CONFLICT SEQADV 2UY1 PHE B 210 UNP Q8SWC5 TYR 210 CONFLICT SEQRES 1 A 493 MET ASP ALA GLU GLU LYS MET GLY VAL GLU LEU SER SER SEQRES 2 A 493 PRO SER ALA ILE MET GLU HIS ALA ARG ARG LEU TYR MET SEQRES 3 A 493 SER LYS ASP TYR ARG SER LEU GLU SER LEU PHE GLY ARG SEQRES 4 A 493 CYS LEU LYS LYS SER TYR ASN LEU ASP LEU TRP MET LEU SEQRES 5 A 493 TYR ILE GLU TYR VAL ARG LYS VAL SER GLN LYS LYS PHE SEQRES 6 A 493 LYS LEU TYR GLU VAL TYR GLU PHE THR LEU GLY GLN PHE SEQRES 7 A 493 GLU ASN TYR TRP ASP SER TYR GLY LEU TYR LYS GLU TYR SEQRES 8 A 493 ILE GLU GLU GLU GLY LYS ILE GLU ASP GLU GLN THR ARG SEQRES 9 A 493 ILE GLU LYS ILE ARG ASN GLY TYR MET ARG ALA LEU GLN SEQRES 10 A 493 THR PRO MET GLY SER LEU SER GLU LEU TRP LYS ASP PHE SEQRES 11 A 493 GLU ASN PHE GLU LEU GLU LEU ASN LYS ILE THR GLY LYS SEQRES 12 A 493 LYS ILE VAL GLY ASP THR LEU PRO ILE PHE GLN SER SER SEQRES 13 A 493 PHE GLN ARG TYR GLN GLN ILE GLN PRO LEU ILE ARG GLY SEQRES 14 A 493 TRP SER VAL LYS ASN ALA ALA ARG LEU ILE ASP LEU GLU SEQRES 15 A 493 MET GLU ASN GLY MET LYS LEU GLY GLY ARG PRO HIS GLU SEQRES 16 A 493 SER ARG MET HIS PHE ILE HIS ASN TYR ILE LEU ASP SER SEQRES 17 A 493 PHE TYR TYR ALA GLU GLU VAL TYR PHE PHE TYR SER GLU SEQRES 18 A 493 TYR LEU ILE GLY ILE GLY GLN LYS GLU LYS ALA LYS LYS SEQRES 19 A 493 VAL VAL GLU ARG GLY ILE GLU MET SER ASP GLY MET PHE SEQRES 20 A 493 LEU SER LEU TYR TYR GLY LEU VAL MET ASP GLU GLU ALA SEQRES 21 A 493 VAL TYR GLY ASP LEU LYS ARG LYS TYR SER MET GLY GLU SEQRES 22 A 493 ALA GLU SER ALA GLU LYS VAL PHE SER LYS GLU LEU ASP SEQRES 23 A 493 LEU LEU ARG ILE ASN HIS LEU ASN TYR VAL LEU LYS LYS SEQRES 24 A 493 ARG GLY LEU GLU LEU PHE ARG LYS LEU PHE ILE GLU LEU SEQRES 25 A 493 GLY ASN GLU GLY VAL GLY PRO HIS VAL PHE ILE TYR CYS SEQRES 26 A 493 ALA PHE ILE GLU TYR TYR ALA THR GLY SER ARG ALA THR SEQRES 27 A 493 PRO TYR ASN ILE PHE SER SER GLY LEU LEU LYS HIS PRO SEQRES 28 A 493 ASP SER THR LEU LEU LYS GLU GLU PHE PHE LEU PHE LEU SEQRES 29 A 493 LEU ARG ILE GLY ASP GLU GLU ASN ALA ARG ALA LEU PHE SEQRES 30 A 493 LYS ARG LEU GLU LYS THR SER ARG MET TRP ASP SER MET SEQRES 31 A 493 ILE GLU TYR GLU PHE MET VAL GLY SER MET GLU LEU PHE SEQRES 32 A 493 ARG GLU LEU VAL ASP GLN LYS MET ASP ALA ILE LYS ALA SEQRES 33 A 493 ASP ALA ILE LEU PRO PRO LEU PRO PRO ARG GLU HIS ASN SEQRES 34 A 493 VAL GLN MET GLU GLY ILE LEU GLY ARG TYR HIS CYS PHE SEQRES 35 A 493 LEU ASP SER PHE ASN PHE LEU ASP LEU LYS ILE ARG ASP SEQRES 36 A 493 ASN SER ARG LEU LEU ASP GLU PHE MET GLU ASN LEU PRO SEQRES 37 A 493 LYS ILE SER GLN GLN ASN ASN VAL LEU SER ASN LEU ARG SEQRES 38 A 493 VAL GLU LYS VAL ILE SER LEU LEU LYS SER VAL GLN SEQRES 1 B 493 MET ASP ALA GLU GLU LYS MET GLY VAL GLU LEU SER SER SEQRES 2 B 493 PRO SER ALA ILE MET GLU HIS ALA ARG ARG LEU TYR MET SEQRES 3 B 493 SER LYS ASP TYR ARG SER LEU GLU SER LEU PHE GLY ARG SEQRES 4 B 493 CYS LEU TRP LYS SER TYR ASN LEU ASP LEU TRP MET LEU SEQRES 5 B 493 TYR ILE GLU TYR VAL ARG LYS VAL SER GLN LYS LYS PHE SEQRES 6 B 493 LYS LEU PHE GLU VAL TYR GLU PHE THR LEU GLY GLN PHE SEQRES 7 B 493 GLU ASN TYR TRP ASP SER TYR GLY LEU PHE LYS GLU TYR SEQRES 8 B 493 ILE GLU GLU LEU GLY LYS ILE GLU ASP GLU GLN THR ARG SEQRES 9 B 493 ILE GLU LYS ILE ARG ASN GLY TYR MET ARG ALA LEU GLN SEQRES 10 B 493 THR PRO MET GLY SER LEU SER GLU LEU TRP LYS ASP PHE SEQRES 11 B 493 GLU ASN PHE GLU LEU GLU LEU ASN LYS ILE THR GLY LYS SEQRES 12 B 493 LYS ILE VAL GLY ASP THR LEU PRO LEU PHE GLN SER SER SEQRES 13 B 493 PHE GLN ARG TYR GLN GLN ILE GLN PRO LEU ILE ARG GLY SEQRES 14 B 493 TRP SER VAL LYS ASN ALA ALA ARG LEU ILE ASP LEU GLU SEQRES 15 B 493 MET GLU ASN GLY MET LYS LEU GLY GLY ARG PRO HIS GLU SEQRES 16 B 493 SER ARG MET HIS PHE ILE HIS ASN TYR ILE LEU ASP SER SEQRES 17 B 493 PHE PHE TYR ALA GLU GLU VAL TYR PHE PHE TYR SER GLU SEQRES 18 B 493 TYR LEU ILE GLY ILE GLY GLN LYS GLU LYS ALA LYS LYS SEQRES 19 B 493 VAL VAL GLU ARG GLY ILE GLU MET SER ASP GLY MET PHE SEQRES 20 B 493 LEU SER LEU TYR TYR GLY LEU VAL MET ASP GLU GLU ALA SEQRES 21 B 493 VAL TYR GLY ASP LEU LYS ARG LYS TYR SER MET GLY GLU SEQRES 22 B 493 ALA GLU SER ALA GLU LYS VAL PHE SER LYS GLU LEU ASP SEQRES 23 B 493 LEU LEU ARG ILE ASN HIS LEU ASN TYR VAL LEU LYS LYS SEQRES 24 B 493 ARG GLY LEU GLU LEU PHE ARG LYS LEU PHE ILE GLU LEU SEQRES 25 B 493 GLY ASN GLU GLY VAL GLY PRO HIS VAL PHE ILE TYR CYS SEQRES 26 B 493 ALA PHE ILE GLU TYR TYR ALA THR GLY SER ARG ALA THR SEQRES 27 B 493 PRO TYR ASN ILE PHE SER SER GLY LEU LEU LYS HIS PRO SEQRES 28 B 493 ASP SER THR LEU LEU LYS GLU GLU PHE PHE LEU PHE LEU SEQRES 29 B 493 LEU ARG ILE GLY ASP GLU GLU ASN ALA ARG ALA LEU PHE SEQRES 30 B 493 LYS ARG LEU GLU LYS THR SER ARG MET TRP ASP SER MET SEQRES 31 B 493 ILE GLU TYR GLU PHE MET VAL GLY SER MET GLU LEU PHE SEQRES 32 B 493 ARG GLU LEU VAL ASP GLN LYS MET ASP ALA ILE LYS ALA SEQRES 33 B 493 ASP ALA ILE LEU PRO PRO LEU PRO PRO ARG GLU HIS ASN SEQRES 34 B 493 VAL GLN MET GLU GLY ILE LEU GLY ARG TYR HIS CYS PHE SEQRES 35 B 493 LEU ASP SER PHE ASN PHE LEU ASP LEU LYS ILE ARG ASP SEQRES 36 B 493 ASN SER ARG LEU LEU ASP GLU PHE MET GLU ASN LEU PRO SEQRES 37 B 493 LYS ILE SER GLN GLN ASN ASN VAL LEU SER ASN LEU ARG SEQRES 38 B 493 VAL GLU LYS VAL ILE SER LEU LEU LYS SER VAL GLN FORMUL 3 HOH *320(H2 O1) HELIX 1 1 SER A 13 SER A 27 1 15 HELIX 2 2 ASP A 29 LEU A 41 1 13 HELIX 3 3 ASN A 46 SER A 61 1 16 HELIX 4 4 LEU A 67 PHE A 78 1 12 HELIX 5 5 SER A 84 GLU A 95 1 12 HELIX 6 6 ASP A 100 GLN A 117 1 18 HELIX 7 7 SER A 122 ASN A 138 1 17 HELIX 8 8 ASN A 138 GLY A 169 1 32 HELIX 9 9 SER A 171 GLU A 184 1 14 HELIX 10 10 GLY A 190 PHE A 209 1 20 HELIX 11 11 ALA A 212 ILE A 226 1 15 HELIX 12 12 GLN A 228 SER A 243 1 16 HELIX 13 13 MET A 246 MET A 256 1 11 HELIX 14 14 GLU A 259 TYR A 269 1 11 HELIX 15 15 PHE A 281 GLY A 301 1 21 HELIX 16 16 GLY A 301 GLY A 313 1 13 HELIX 17 17 GLY A 318 GLY A 334 1 17 HELIX 18 18 ARG A 336 HIS A 350 1 15 HELIX 19 19 SER A 353 GLY A 368 1 16 HELIX 20 20 ASP A 369 LEU A 380 1 12 HELIX 21 21 THR A 383 GLY A 398 1 16 HELIX 22 22 SER A 399 ALA A 416 1 18 HELIX 23 23 GLU A 433 ASN A 447 1 15 HELIX 24 24 SER B 13 SER B 27 1 15 HELIX 25 25 ASP B 29 LEU B 41 1 13 HELIX 26 26 ASN B 46 ARG B 58 1 13 HELIX 27 27 PHE B 68 GLU B 79 1 12 HELIX 28 28 SER B 84 TYR B 91 1 8 HELIX 29 29 LEU B 123 LYS B 128 1 6 HELIX 30 30 THR B 149 ARG B 168 1 20 HELIX 31 31 VAL B 172 ASN B 185 1 14 HELIX 32 32 ARG B 192 PHE B 209 1 18 HELIX 33 33 ALA B 212 ILE B 226 1 15 HELIX 34 34 GLN B 228 SER B 243 1 16 HELIX 35 35 MET B 246 MET B 256 1 11 HELIX 36 36 GLU B 259 SER B 270 1 12 HELIX 37 37 PHE B 281 GLY B 301 1 21 HELIX 38 38 GLY B 301 LEU B 312 1 12 HELIX 39 39 GLY B 313 GLU B 315 5 3 HELIX 40 40 GLY B 318 GLY B 334 1 17 HELIX 41 41 ARG B 336 HIS B 350 1 15 HELIX 42 42 SER B 353 GLY B 368 1 16 HELIX 43 43 ASP B 369 LEU B 380 1 12 HELIX 44 44 THR B 383 GLY B 398 1 16 HELIX 45 45 SER B 399 ALA B 416 1 18 HELIX 46 46 GLU B 433 ASN B 447 1 15 CRYST1 44.440 148.280 91.440 90.00 92.15 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022502 0.000000 0.000845 0.00000 SCALE2 0.000000 0.006744 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010944 0.00000