HEADER UNKNOWN FUNCTION 10-APR-07 2UYK TITLE CRYSTAL STRUCTURE OF E. COLI TDCF WITH BOUND SERINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TDCF; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: TDCF; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: MC4100; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28A; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETHF1 KEYWDS UNKNOWN FUNCTION, YJGF/YER057C/UK114 FAMILY, SERINE, TDCF PROTEIN, KEYWDS 2 LIGAND BINDING, 2-KETOBUTYRATE EXPDTA X-RAY DIFFRACTION AUTHOR J.D.BURMAN,C.E.M.STEVENSON,R.G.SAWERS,D.M.LAWSON REVDAT 3 13-DEC-23 2UYK 1 LINK REVDAT 2 24-FEB-09 2UYK 1 VERSN REVDAT 1 29-MAY-07 2UYK 0 JRNL AUTH J.D.BURMAN,C.E.M.STEVENSON,R.G.SAWERS,D.M.LAWSON JRNL TITL THE CRYSTAL STRUCTURE OF ESCHERICHIA COLI TDCF, A MEMBER OF JRNL TITL 2 THE HIGHLY CONSERVED YJGF/YER057C/UK114 FAMILY. JRNL REF BMC STRUCT.BIOL. V. 7 30 2007 JRNL REFN ESSN 1472-6807 JRNL PMID 17506874 JRNL DOI 10.1186/1472-6807-7-30 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 50446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2598 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 7.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 35.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 637 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 28 REMARK 3 BIN FREE R VALUE : 0.2240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2886 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 457 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43700 REMARK 3 B22 (A**2) : 0.31600 REMARK 3 B33 (A**2) : 0.12100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.111 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.087 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.945 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2939 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4003 ; 1.555 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 378 ; 5.694 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;33.154 ;25.299 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 498 ;12.325 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.827 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 485 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3240 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 560 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1466 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 331 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.248 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.217 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2079 ; 1.671 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3106 ; 2.064 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1100 ; 3.513 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 897 ; 4.797 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2UYK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-APR-07. REMARK 100 THE DEPOSITION ID IS D_1290032231. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50532 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 35.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.12000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1QU9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 1000, 8% PEG 8000, NO BUFFER, REMARK 280 PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 36.34250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.17550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.34250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.17550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 129 REMARK 465 MET B 1 REMARK 465 ALA B 129 REMARK 465 MET C 1 REMARK 465 ALA C 129 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CD CE NZ REMARK 470 GLN B 38 CD OE1 NE2 REMARK 470 LYS C 2 CE NZ REMARK 470 LYS C 3 CD CE NZ REMARK 470 ARG C 9 NE CZ NH1 NH2 REMARK 470 GLN C 38 CG CD OE1 NE2 REMARK 470 GLN C 47 CG CD OE1 NE2 REMARK 470 GLU C 89 CG CD OE1 OE2 REMARK 470 GLN C 93 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2149 O HOH B 2150 2.07 REMARK 500 OD1 ASP A 45 O HOH A 2064 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 74 CG - SD - CE ANGL. DEV. = -15.6 DEGREES REMARK 500 MET B 74 CG - SD - CE ANGL. DEV. = -10.8 DEGREES REMARK 500 PRO C 16 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 MET C 74 CG - SD - CE ANGL. DEV. = -10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 14 -75.43 -78.23 REMARK 500 LYS B 115 17.84 57.95 REMARK 500 ILE C 14 -91.39 -63.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2013 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A2031 DISTANCE = 6.56 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SER C1129 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2UYJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E. COLI TDCF WITH BOUND ETHYLENE GLYCOL REMARK 900 RELATED ID: 2UYN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E. COLI TDCF WITH BOUND 2-KETOBUTYRATE REMARK 900 RELATED ID: 2UYP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E. COLI TDCF WITH BOUND PROPIONATE DBREF 2UYK A 1 129 UNP P0AGL2 TDCF_ECOLI 1 129 DBREF 2UYK B 1 129 UNP P0AGL2 TDCF_ECOLI 1 129 DBREF 2UYK C 1 129 UNP P0AGL2 TDCF_ECOLI 1 129 SEQRES 1 A 129 MET LYS LYS ILE ILE GLU THR GLN ARG ALA PRO GLY ALA SEQRES 2 A 129 ILE GLY PRO TYR VAL GLN GLY VAL ASP LEU GLY SER MET SEQRES 3 A 129 VAL PHE THR SER GLY GLN ILE PRO VAL OCS PRO GLN THR SEQRES 4 A 129 GLY GLU ILE PRO ALA ASP VAL GLN ASP GLN ALA ARG LEU SEQRES 5 A 129 SER LEU GLU ASN VAL LYS ALA ILE VAL VAL ALA ALA GLY SEQRES 6 A 129 LEU SER VAL GLY ASP ILE ILE LYS MET THR VAL PHE ILE SEQRES 7 A 129 THR ASP LEU ASN ASP PHE ALA THR ILE ASN GLU VAL TYR SEQRES 8 A 129 LYS GLN PHE PHE ASP GLU HIS GLN ALA THR TYR PRO THR SEQRES 9 A 129 ARG SER CYS VAL GLN VAL ALA ARG LEU PRO LYS ASP VAL SEQRES 10 A 129 LYS LEU GLU ILE GLU ALA ILE ALA VAL ARG SER ALA SEQRES 1 B 129 MET LYS LYS ILE ILE GLU THR GLN ARG ALA PRO GLY ALA SEQRES 2 B 129 ILE GLY PRO TYR VAL GLN GLY VAL ASP LEU GLY SER MET SEQRES 3 B 129 VAL PHE THR SER GLY GLN ILE PRO VAL OCS PRO GLN THR SEQRES 4 B 129 GLY GLU ILE PRO ALA ASP VAL GLN ASP GLN ALA ARG LEU SEQRES 5 B 129 SER LEU GLU ASN VAL LYS ALA ILE VAL VAL ALA ALA GLY SEQRES 6 B 129 LEU SER VAL GLY ASP ILE ILE LYS MET THR VAL PHE ILE SEQRES 7 B 129 THR ASP LEU ASN ASP PHE ALA THR ILE ASN GLU VAL TYR SEQRES 8 B 129 LYS GLN PHE PHE ASP GLU HIS GLN ALA THR TYR PRO THR SEQRES 9 B 129 ARG SER CYS VAL GLN VAL ALA ARG LEU PRO LYS ASP VAL SEQRES 10 B 129 LYS LEU GLU ILE GLU ALA ILE ALA VAL ARG SER ALA SEQRES 1 C 129 MET LYS LYS ILE ILE GLU THR GLN ARG ALA PRO GLY ALA SEQRES 2 C 129 ILE GLY PRO TYR VAL GLN GLY VAL ASP LEU GLY SER MET SEQRES 3 C 129 VAL PHE THR SER GLY GLN ILE PRO VAL OCS PRO GLN THR SEQRES 4 C 129 GLY GLU ILE PRO ALA ASP VAL GLN ASP GLN ALA ARG LEU SEQRES 5 C 129 SER LEU GLU ASN VAL LYS ALA ILE VAL VAL ALA ALA GLY SEQRES 6 C 129 LEU SER VAL GLY ASP ILE ILE LYS MET THR VAL PHE ILE SEQRES 7 C 129 THR ASP LEU ASN ASP PHE ALA THR ILE ASN GLU VAL TYR SEQRES 8 C 129 LYS GLN PHE PHE ASP GLU HIS GLN ALA THR TYR PRO THR SEQRES 9 C 129 ARG SER CYS VAL GLN VAL ALA ARG LEU PRO LYS ASP VAL SEQRES 10 C 129 LYS LEU GLU ILE GLU ALA ILE ALA VAL ARG SER ALA MODRES 2UYK OCS A 36 CYS CYSTEINESULFONIC ACID MODRES 2UYK OCS B 36 CYS CYSTEINESULFONIC ACID MODRES 2UYK OCS C 36 CYS CYSTEINESULFONIC ACID HET OCS A 36 9 HET OCS B 36 9 HET OCS C 36 9 HET SER C1129 9 HETNAM OCS CYSTEINESULFONIC ACID HETNAM SER SERINE FORMUL 1 OCS 3(C3 H7 N O5 S) FORMUL 4 SER C3 H7 N O3 FORMUL 5 HOH *457(H2 O) HELIX 1 1 ASP A 45 ALA A 64 1 20 HELIX 2 2 SER A 67 GLY A 69 5 3 HELIX 3 3 ASP A 80 ASN A 82 5 3 HELIX 4 4 ASP A 83 HIS A 98 1 16 HELIX 5 5 LEU A 113 VAL A 117 5 5 HELIX 6 6 ASP B 45 ALA B 64 1 20 HELIX 7 7 SER B 67 GLY B 69 5 3 HELIX 8 8 ASP B 80 ASN B 82 5 3 HELIX 9 9 ASP B 83 HIS B 98 1 16 HELIX 10 10 LEU B 113 VAL B 117 5 5 HELIX 11 11 ASP C 45 ALA C 64 1 20 HELIX 12 12 SER C 67 GLY C 69 5 3 HELIX 13 13 ASP C 80 ASN C 82 5 3 HELIX 14 14 ASP C 83 HIS C 98 1 16 HELIX 15 15 LEU C 113 VAL C 117 5 5 SHEET 1 AA 6 LYS A 3 ILE A 5 0 SHEET 2 AA 6 GLY A 20 ASP A 22 -1 O GLY A 20 N ILE A 5 SHEET 3 AA 6 MET A 26 THR A 29 -1 O PHE A 28 N VAL A 21 SHEET 4 AA 6 LEU A 119 VAL A 126 -1 O ALA A 123 N THR A 29 SHEET 5 AA 6 ILE A 71 ILE A 78 -1 N ILE A 72 O ILE A 124 SHEET 6 AA 6 THR A 104 GLN A 109 1 O THR A 104 N MET A 74 SHEET 1 BA 6 LYS B 3 ILE B 5 0 SHEET 2 BA 6 GLY B 20 ASP B 22 -1 O GLY B 20 N ILE B 5 SHEET 3 BA 6 MET B 26 THR B 29 -1 O PHE B 28 N VAL B 21 SHEET 4 BA 6 LEU B 119 VAL B 126 -1 O ALA B 123 N THR B 29 SHEET 5 BA 6 ILE B 71 ILE B 78 -1 N ILE B 72 O ILE B 124 SHEET 6 BA 6 THR B 104 GLN B 109 1 O THR B 104 N MET B 74 SHEET 1 CA 6 LYS C 3 ILE C 5 0 SHEET 2 CA 6 GLY C 20 ASP C 22 -1 O GLY C 20 N ILE C 5 SHEET 3 CA 6 MET C 26 THR C 29 -1 O PHE C 28 N VAL C 21 SHEET 4 CA 6 LEU C 119 VAL C 126 -1 O ALA C 123 N THR C 29 SHEET 5 CA 6 ILE C 71 ILE C 78 -1 N ILE C 72 O ILE C 124 SHEET 6 CA 6 THR C 104 GLN C 109 1 O THR C 104 N MET C 74 LINK C VAL A 35 N OCS A 36 1555 1555 1.32 LINK C OCS A 36 N PRO A 37 1555 1555 1.36 LINK C VAL B 35 N OCS B 36 1555 1555 1.32 LINK C OCS B 36 N PRO B 37 1555 1555 1.35 LINK C VAL C 35 N OCS C 36 1555 1555 1.33 LINK C OCS C 36 N PRO C 37 1555 1555 1.35 SITE 1 AC1 10 GLY A 31 ILE A 33 GLU A 120 PHE C 84 SITE 2 AC1 10 ARG C 105 SER C 106 CYS C 107 HOH C2137 SITE 3 AC1 10 HOH C2138 HOH C2139 CRYST1 72.685 86.351 62.598 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013758 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011581 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015975 0.00000 MTRIX1 1 0.210460 0.842560 -0.495780 2.53988 1 MTRIX2 1 0.653790 0.255740 0.712150 -6.08403 1 MTRIX3 1 0.726820 -0.474020 -0.497030 23.42423 1 MTRIX1 2 0.216040 0.631030 0.745070 -13.58612 1 MTRIX2 2 0.839520 0.269570 -0.471740 10.09948 1 MTRIX3 2 -0.498530 0.727420 -0.471520 16.50919 1 MTRIX1 3 0.207750 0.833240 -0.512390 2.95772 1 MTRIX2 3 0.637680 0.281850 0.716890 -6.59721 1 MTRIX3 3 0.741760 -0.475680 -0.472790 22.80528 1